Rh3DG278100

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002343
Physical Location & Seq
Reverse (-)
28190148 .. 28198556
8409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG278100.1

Sequence Viewer

Length: 1467 bp
ATGAAAGATGTGCTGCCTTGCGTACCATCTGGTCTAGGAAGCATGTTGGCTGGTAAAGATACTGGCGAGGTGGATATTGAACTTTTGAAGGTTACTCACTTACGGAAGATGGGCCGCTATACTACAGGGTTTATGTTGTTAGGTTCTTCTTCAAAGCGAAGGAAGAAACGGAGGCATTATCAATTGTTCAGCCGTAATGGAGTTATAGTTTCTGTTCATGACTTTGTATTTGTTTTAGCAGAGGAGGGTAAGCGTCTTGTTGCGTACTTAGAAGATACCCCCGTGCATTTTGAGAAATTTCTGAAAGAGGCGAAGCAAACACAGCCGGAACCCTTTGTATGCCATAAACAGTTTGAAAATGATGATGTAAAGACCTTTGACATTACTCAAGTTGAAGGTTATTGGAAACAGGAGATACTTAGATACATGCACACAGTTATCCCTTCAAAGGTTCATGTCAGTTCTCAACAATCTGTTAATGAGTTGAAAGTGGAAGAAATTGCTCATGCCAGTGATATCAGACCTAAAAAGAGAGGTGAAAAACAAACCCTGCCGCAGTATCTAGCAGAAGGTTCCCAGGAAGTCCTGTCCCAAGATAGTGGCATTAGAGGGTGTTGGTTTAGAGCATTGATTATCAAGAAGCATAAAGATAAAGTTAAGGTGCAGTATCAAGATATTCAGGATGCAGCTGATGAAGCTAACAAACTTGAGGAATGGATTTTAGCATCAAAGATTTCAGCTCCTGATCAATTGGGTAGGCATGATGGTTGGTGGGAAGGCATAGTACTTCAAAAGGAATATGAAGACAGACTTCATGAGAGAATCAGGCCAGACCTTGTGGTCTCAATATCAAGTACTTTAGAAACCAAGAAAACTGTTGGAAACTCATTTGATGGCATGTTAGGACTGTCTGAAATCAGTGATAGCAGAGAGTTGAAGAGACTTGAAACATCTGCTCTTTCCTCTGATAATGACAAGGATGAAAAAGTCAATGAAGTCAATAAGGATTATGTCCCTCCACCCTCTTCCTCTAGTGCTCTTCCCTCTTCCTCCACTCAGGGTCCAAACCCCAAGGCGACGGAGATGAGAAACTTGATTGCAGAACTTGATAGGGATCTCGAAAGTATAACAATGGAAATGAAAGAAGCCGTGTACCCTCGACAAAAGGCTAATTCATTACAGGAGTATATTCAAGAATTCTTGGCGGTGAGAACTAGACATCCAGACTTATATGAGTGCTTGGAAGATCGTAATTATCGATTCATACATGGTCTAAATTCAAGGATGCGAGATATGAGGACAATGAACTACTCCCAACCTTGGCACGAGGTTATTGAGGAGGCCGAGAGGGTTGATGCATTCTTGGAAGAAATATACACTGTGCTCGATGCAGGTGACGGACGACCACTTCCTCCAGAAATTCAAGCAATCAAAGACCGTATCGATCTTGCATACTATCAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

488

Amino Acids

56.2

Weight (kDa)

5.87

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 194 - 245 8.5e-15 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1382
AasI GACNNNNNNGTC 1 cut(s) 839
Acc36I ACCTGC 1 cut(s) 1382
AciI CCGC 3 cut(s) 115, 554, 1205
AclWI GGATC 1 cut(s) 1122
AcsI RAATTY 4 cut(s) 296, 1196, 1276, 1419
AfaI GTAC 5 cut(s) 24, 266, 786, 856, 1154
AfiI CCNNNNNNNGG 2 cut(s) 448, 1320
AjnI CCWGG 1 cut(s) 576
AloI GAACNNNNNNTCC 2 cut(s) 1204, 1236
AluBI AGCT 3 cut(s) 689, 698, 740
AluI AGCT 3 cut(s) 689, 698, 740
Alw21I GWGCWC 2 cut(s) 1039, 1386
Alw26I GTCTC 2 cut(s) 847, 934
AlwI GGATC 1 cut(s) 1122
AlwNI CAGNNNCTG 1 cut(s) 743
AoxI GGCC 3 cut(s) 112, 827, 1341
ApeKI GCWGC 2 cut(s) 13, 686
ApoI RAATTY 4 cut(s) 296, 1196, 1276, 1419
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspS9I GGNCC 2 cut(s) 112, 1061
AsuHPI GGTGA 3 cut(s) 548, 1219, 1406
AvaII GGWCC 1 cut(s) 1061
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
BarI GAAGNNNNNNTAC 2 cut(s) 768, 800
BauI CACGAG 1 cut(s) 1325
BbsI GAAGAC 1 cut(s) 810
Bbv12I GWGCWC 2 cut(s) 1039, 1386
BbvI GCAGC 1 cut(s) 698
BccI CCATC 4 cut(s) 34, 103, 758, 887
BceAI ACGGC 2 cut(s) 177, 1133
BciT130I CCWGG 1 cut(s) 578
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 2 cut(s) 847, 934
BfaI CTAG 4 cut(s) 35, 563, 1032, 1215
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 1382
BisI GCNGC 4 cut(s) 14, 115, 554, 687
BlsI GCNGC 4 cut(s) 15, 116, 555, 688
BmcAI AGTACT 2 cut(s) 786, 856
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 1061
BmgT120I GGNCC 2 cut(s) 112, 1061
BmiI GGNNCC 3 cut(s) 330, 574, 1062
BmrFI CCNGG 1 cut(s) 578
BmsI GCATC 5 cut(s) 673, 734, 1275, 1345, 1378
BpiI GAAGAC 1 cut(s) 810
BpmI CTGGAG 1 cut(s) 1398
BpuEI CTTGAG 2 cut(s) 372, 728
Bsa29I ATCGAT 2 cut(s) 1258, 1443
BsaBI GATNNNNATC 1 cut(s) 1113
BsaI GGTCTC 1 cut(s) 847
BsaJI CCNNGG 3 cut(s) 576, 1071, 1319
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 1320
Bse1I ACTGG 2 cut(s) 67, 510
Bse8I GATNNNNATC 1 cut(s) 1113
BseBI CCWGG 1 cut(s) 578
BseCI ATCGAT 2 cut(s) 1258, 1443
BseDI CCNNGG 3 cut(s) 576, 1071, 1319
BseGI GGATG 4 cut(s) 688, 985, 1219, 1290
BseJI GATNNNNATC 1 cut(s) 1113
BseLI CCNNNNNNNGG 2 cut(s) 448, 1320
BseMII CTCAG 1 cut(s) 1070
BseNI ACTGG 2 cut(s) 67, 510
BseRI GAGGAG 2 cut(s) 257, 1352
BseXI GCAGC 1 cut(s) 698
BsgI GTGCAG 1 cut(s) 683
BshFI GGCC 3 cut(s) 114, 829, 1343
BshVI ATCGAT 2 cut(s) 1258, 1443
BsiHKAI GWGCWC 2 cut(s) 1039, 1386
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 2 cut(s) 574, 998
BslI CCNNNNNNNGG 2 cut(s) 448, 1320
BsmAI GTCTC 2 cut(s) 847, 934
BsmFI GGGAC 2 cut(s) 574, 998
BsmI GAATGC 1 cut(s) 1358
BsnI GGCC 3 cut(s) 114, 829, 1343
Bso31I GGTCTC 1 cut(s) 847
Bsp1286I GDGCHC 2 cut(s) 1039, 1386
Bsp143I GATC 4 cut(s) 745, 1114, 1246, 1444
BspACI CCGC 3 cut(s) 115, 554, 1205
BspANI GGCC 3 cut(s) 114, 829, 1343
BspCNI CTCAG 1 cut(s) 1069
BspDI ATCGAT 2 cut(s) 1258, 1443
BspHI TCATGA 2 cut(s) 217, 814
BspLI GGNNCC 3 cut(s) 330, 574, 1062
BspMI ACCTGC 1 cut(s) 1382
BspPI GGATC 1 cut(s) 1122
BspQI GCTCTTC 1 cut(s) 1044
BspTNI GGTCTC 1 cut(s) 847
BsrI ACTGG 2 cut(s) 67, 510
BssECI CCNNGG 3 cut(s) 576, 1071, 1319
BssMI GATC 4 cut(s) 745, 1114, 1246, 1444
BssSI CACGAG 1 cut(s) 1325
BssT1I CCWWGG 2 cut(s) 1071, 1319
Bst2BI CACGAG 1 cut(s) 1325
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 6 cut(s) 351, 436, 877, 909, 1381, 1439
Bst6I CTCTTC 4 cut(s) 932, 1030, 1044, 1051
BstDEI CTNAG 3 cut(s) 268, 419, 1056
BstF5I GGATG 4 cut(s) 688, 985, 1219, 1290
BstKTI GATC 4 cut(s) 748, 1117, 1249, 1447
BstMAI GTCTC 2 cut(s) 847, 934
BstMBI GATC 4 cut(s) 745, 1114, 1246, 1444
BstMWI GCNNNNNNNGC 2 cut(s) 322, 695
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 3 cut(s) 46, 430, 901
BstSCI CCNGG 1 cut(s) 576
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 698
BstV2I GAAGAC 1 cut(s) 810
BstX2I RGATCY 1 cut(s) 1114
BstXI CCANNNNNNTGG 1 cut(s) 599
BstYI RGATCY 1 cut(s) 1114
Bsu15I ATCGAT 2 cut(s) 1258, 1443
BsuRI GGCC 3 cut(s) 114, 829, 1343
BsuTUI ATCGAT 2 cut(s) 1258, 1443
BtsCI GGATG 4 cut(s) 688, 985, 1219, 1290
BtsIMutI CAGTG 3 cut(s) 517, 925, 1377
BveI ACCTGC 1 cut(s) 1382
CaiI CAGNNNCTG 1 cut(s) 743
CciI TCATGA 2 cut(s) 217, 814
Cfr13I GGNCC 2 cut(s) 112, 1061
ClaI ATCGAT 2 cut(s) 1258, 1443
CseI GACGC 1 cut(s) 242
Csp6I GTAC 5 cut(s) 23, 265, 785, 855, 1153
CviAII CATG 9 cut(s) 43, 218, 427, 455, 506, 761, 815, 898, 1268
CviQI GTAC 5 cut(s) 23, 265, 785, 855, 1153
DdeI CTNAG 3 cut(s) 268, 419, 1056
DpnI GATC 4 cut(s) 747, 1116, 1248, 1446
DpnII GATC 4 cut(s) 745, 1114, 1246, 1444
DrdI GACNNNNNNGTC 1 cut(s) 839
DseDI GACNNNNNNGTC 1 cut(s) 839
Eam1104I CTCTTC 4 cut(s) 932, 1030, 1044, 1051
EarI CTCTTC 4 cut(s) 932, 1030, 1044, 1051
Eco130I CCWWGG 2 cut(s) 1071, 1319
Eco31I GGTCTC 1 cut(s) 847
Eco32I GATATC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 1061
EcoRI GAATTC 1 cut(s) 1196
EcoRII CCWGG 1 cut(s) 576
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 1071, 1319
EcoT22I ATGCAT 1 cut(s) 1360
ErhI CCWWGG 2 cut(s) 1071, 1319
FaeI CATG 9 cut(s) 46, 221, 430, 458, 509, 764, 818, 901, 1271
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 2 cut(s) 574, 998
FatI CATG 9 cut(s) 42, 217, 426, 454, 505, 760, 814, 897, 1267
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 4 cut(s) 14, 115, 554, 687
FokI GGATG 4 cut(s) 695, 992, 1206, 1297
Fsp4HI GCNGC 4 cut(s) 14, 115, 554, 687
FspBI CTAG 4 cut(s) 35, 563, 1032, 1215
GluI GCNGC 4 cut(s) 14, 115, 554, 687
GsuI CTGGAG 1 cut(s) 1398
HaeIII GGCC 3 cut(s) 114, 829, 1343
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 242
Hin1II CATG 9 cut(s) 46, 221, 430, 458, 509, 764, 818, 901, 1271
HinfI GANTC 2 cut(s) 822, 1260
HpaII CCGG 1 cut(s) 326
HphI GGTGA 3 cut(s) 548, 1219, 1406
Hpy166II GTNNAC 1 cut(s) 1153
Hpy188I TCNGA 4 cut(s) 303, 521, 913, 967
Hpy8I GTNNAC 1 cut(s) 1153
Hpy99I CGWCG 1 cut(s) 1081
HpyAV CCTTC 6 cut(s) 82, 153, 389, 453, 563, 770
HpyCH4III ACNGT 6 cut(s) 351, 436, 877, 909, 1381, 1439
HpyCH4V TGCA 8 cut(s) 286, 430, 664, 686, 1100, 1358, 1391, 1451
HpyF10VI GCNNNNNNNGC 2 cut(s) 322, 695
HpyF3I CTNAG 3 cut(s) 268, 419, 1056
Hsp92II CATG 9 cut(s) 46, 221, 430, 458, 509, 764, 818, 901, 1271
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 4 cut(s) 745, 1114, 1246, 1444
LguI GCTCTTC 1 cut(s) 1044
LmnI GCTCC 1 cut(s) 745
Lsp1109I GCAGC 1 cut(s) 698
LweI GCATC 5 cut(s) 673, 734, 1275, 1345, 1378
MaeI CTAG 4 cut(s) 35, 563, 1032, 1215
MaeIII GTNAC 2 cut(s) 91, 1394
MalI GATC 4 cut(s) 747, 1116, 1248, 1446
MboI GATC 4 cut(s) 745, 1114, 1246, 1444
MfeI CAATTG 2 cut(s) 182, 749
MflI RGATCY 1 cut(s) 1114
MhlI GDGCHC 2 cut(s) 1039, 1386
MluCI AATT 9 cut(s) 182, 296, 498, 749, 1171, 1196, 1252, 1276, 1419
MmeI TCCRAC 1 cut(s) 859
Mph1103I ATGCAT 1 cut(s) 1360
MseI TTAA 2 cut(s) 477, 657
MslI CAYNNNNRTG 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 578
MunI CAATTG 2 cut(s) 182, 749
Mva1269I GAATGC 1 cut(s) 1358
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 2 cut(s) 322, 695
NdeII GATC 4 cut(s) 745, 1114, 1246, 1444
NlaIII CATG 9 cut(s) 46, 221, 430, 458, 509, 764, 818, 901, 1271
NlaIV GGNNCC 3 cut(s) 330, 574, 1062
NmeAIII GCCGAG 1 cut(s) 1369
NmuCI GTSAC 1 cut(s) 1394
NsiI ATGCAT 1 cut(s) 1360
NspI RCATGY 3 cut(s) 46, 430, 901
PagI TCATGA 2 cut(s) 217, 814
PaqCI CACCTGC 1 cut(s) 1382
PciSI GCTCTTC 1 cut(s) 1044
PcsI WCGNNNNNNNCGW 1 cut(s) 1255
PctI GAATGC 1 cut(s) 1358
PfeI GAWTC 2 cut(s) 822, 1260
PkrI GCNGC 4 cut(s) 15, 116, 555, 688
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 3 cut(s) 330, 574, 1062
PspPI GGNCC 2 cut(s) 112, 1061
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 1 cut(s) 1114
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 5 cut(s) 24, 266, 786, 856, 1154
RsaNI GTAC 5 cut(s) 23, 265, 785, 855, 1153
RseI CAYNNNNRTG 1 cut(s) 510
SapI GCTCTTC 1 cut(s) 1044
SaqAI TTAA 2 cut(s) 477, 657
SatI GCNGC 4 cut(s) 14, 115, 554, 687
Sau3AI GATC 4 cut(s) 745, 1114, 1246, 1444
Sau96I GGNCC 2 cut(s) 112, 1061
ScaI AGTACT 2 cut(s) 786, 856
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 2 cut(s) 1039, 1386
SfaNI GCATC 5 cut(s) 673, 734, 1275, 1345, 1378
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 1061
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 2 cut(s) 387, 707
SmoI CTYRAG 2 cut(s) 387, 707
Sse9I AATT 9 cut(s) 182, 296, 498, 749, 1171, 1196, 1252, 1276, 1419
SsiI CCGC 3 cut(s) 115, 554, 1205
SspMI CTAG 4 cut(s) 35, 563, 1032, 1215
StyD4I CCNGG 1 cut(s) 576
StyI CCWWGG 2 cut(s) 1071, 1319
TaaI ACNGT 6 cut(s) 351, 436, 877, 909, 1381, 1439
TaqI TCGA 5 cut(s) 1119, 1159, 1258, 1386, 1443
TasI AATT 9 cut(s) 182, 296, 498, 749, 1171, 1196, 1252, 1276, 1419
TatI WGTACW 2 cut(s) 784, 854
TauI GCSGC 2 cut(s) 117, 556
TfiI GAWTC 2 cut(s) 822, 1260
Tru1I TTAA 2 cut(s) 477, 657
Tru9I TTAA 2 cut(s) 477, 657
TscAI CASTG 3 cut(s) 517, 925, 1384
TseFI GTSAC 1 cut(s) 1394
TseI GCWGC 2 cut(s) 13, 686
Tsp45I GTSAC 1 cut(s) 1394
TspGWI ACGGA 4 cut(s) 118, 184, 1094, 1413
TspRI CASTG 3 cut(s) 517, 925, 1384
VpaK11BI GGWCC 1 cut(s) 1061
XapI RAATTY 4 cut(s) 296, 1196, 1276, 1419
XceI RCATGY 3 cut(s) 46, 430, 901
XspI CTAG 4 cut(s) 35, 563, 1032, 1215
ZrmI AGTACT 2 cut(s) 786, 856
Zsp2I ATGCAT 1 cut(s) 1360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.