Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015893.1

Orthogroup ID

OG0002343

Physical Location & Seq

Genomic Coordinates Reverse (-)

22036 .. 23560

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015893.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgcatatagcaacgtctcctagaaaatccttccaggccttcaaaaggaagtatctaagccagaggttatcattcatccttctcctcaccctttctctcgttcctgtgcatatcactcttcttgcatgccccaaaactcctggttcgggacctctgatcaaaatgtgtccttcatcaaagttatgtgctgccttgcgtaccatctggtctaggaagcaagatactggcgaggtggatattgaacttttgaaggttactcacttacggaagatgggccgctatactacagggtttatgttgttaggttcttcttcaaagcgaaggaagaaacggaggcattatcaattgttcagccgtaatggagttatagtttctgttcatgactttgtatttgttttagcagaggagggtaagcgtcttgttgcgtacttagaagatacgtacgaggactcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

151

Amino Acids

17.26

Weight (kDa)

10.19

Isoelectric Point (pI)

67.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68580 AT1G68580 AT1G68580 AT1G68580 AT1G68580
fragaria_vesca	FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610
malus_domestica	MD13G1043500.v1.1 MD16G1044300.v1.1
prunus_persica	Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1
pyrus_communis	pycom13g03830 pycom16g03850
rosa_chinensis	RchiOBHm_Chr3g0482621 RchiOBHm_Chr3g0482631 RchiOBHm_Chr3g0482641 RchiOBHm_Chr4g0435461
rosa_laevigata	RLG00000006591
rosa_multiflora	Rmu_sc0006069.1_g000002 Rmu_sc0015893.1_g000006 Rmu_sc0015893.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234330 Rroxscaffold_5G00376690
rosa_rugosa	Rorug04G0285200
rosa_samantha	Rh3AG248900 Rh3CG281900 Rh3CG282000 Rh3CG282100 Rh3DG278100 Rh4AG340900 Rh4BG349200 Rh4CG363700 Rh4DG343400
rosa_wichuraiana	Rw3G022470 Rw4G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	277
AfaI	GTAC	3 cut(s)	199, 428, 443
AfiI	CCNNNNNNNGG	2 cut(s)	45, 146
AgsI	TTSAA	4 cut(s)	43, 242, 250, 315
AjnI	CCWGG	2 cut(s)	33, 139
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	36, 274
ApeKI	GCWGC	1 cut(s)	188
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspS9I	GGNCC	2 cut(s)	149, 274
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	209, 265
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	2 cut(s)	35, 141
BclI	TGATCA	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	21, 210
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	2 cut(s)	189, 277
BlsI	GCNGC	2 cut(s)	190, 278
Bme1390I	CCNGG	2 cut(s)	35, 141
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	149, 274
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	35, 141
BsaAI	YACGTR	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 146
Bse1I	ACTGG	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	35, 141
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	45, 146
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	2 cut(s)	74, 419
BseXI	GCAGC	1 cut(s)	175
BshFI	GGCC	2 cut(s)	38, 276
BsiWI	CGTACG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	45, 146
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	38, 276
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	38, 276
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	35, 141
Bst6I	CTCTTC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	56, 430
BstENI	CCTNNNNNAGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	156
BstNI	CCWGG	2 cut(s)	35, 141
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	33, 139
BstSFI	CTRYAG	1 cut(s)	285
BstSNI	TACGTA	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	38, 276
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	127
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	149, 274
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	3 cut(s)	198, 427, 442
CviAII	CATG	2 cut(s)	126, 380
CviJI	RGCY	4 cut(s)	38, 60, 276, 354
CviKI_1	RGCY	4 cut(s)	38, 60, 276, 354
CviQI	GTAC	3 cut(s)	198, 427, 442
DdeI	CTNAG	2 cut(s)	56, 430
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco105I	TACGTA	1 cut(s)	441
Eco147I	AGGCCT	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	33, 139
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	2 cut(s)	129, 383
FaiI	YATR	9 cut(s)	6, 8, 111, 127, 184, 282, 296, 368, 381
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	2 cut(s)	125, 379
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	189, 277
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	189, 277
FspBI	CTAG	2 cut(s)	21, 210
GluI	GCNGC	2 cut(s)	189, 277
HaeIII	GGCC	2 cut(s)	38, 276
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	129, 383
HinfI	GANTC	1 cut(s)	449
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	147, 380
HpyAV	CCTTC	6 cut(s)	40, 49, 89, 180, 244, 315
HpyCH4IV	ACGT	2 cut(s)	14, 440
HpyCH4V	TGCA	3 cut(s)	4, 109, 125
HpyF3I	CTNAG	2 cut(s)	56, 430
HpySE526I	ACGT	2 cut(s)	14, 440
Hsp92II	CATG	2 cut(s)	129, 383
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	9 cut(s)	20, 47, 74, 117, 126, 153, 190, 210, 273
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	21, 210
MaeII	ACGT	2 cut(s)	14, 440
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	6 cut(s)	110, 280, 300, 303, 337, 446
MfeI	CAATTG	1 cut(s)	344
MluCI	AATT	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	8 cut(s)	57, 95, 162, 223, 327, 397, 400, 439
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	454
MspR9I	CCNGG	2 cut(s)	35, 141
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	2 cut(s)	35, 141
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	129, 383
NlaIV	GGNNCC	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	129
PaeI	GCATGC	1 cut(s)	129
PagI	TCATGA	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	38
Pfl23II	CGTACG	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	190, 278
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
Ppu21I	YACGTR	1 cut(s)	441
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	33, 139
PspGI	CCWGG	2 cut(s)	33, 139
PspLI	CGTACG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	2 cut(s)	149, 274
PspPPI	RGGWCCY	1 cut(s)	149
RsaI	GTAC	3 cut(s)	199, 428, 443
RsaNI	GTAC	3 cut(s)	198, 427, 442
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	2 cut(s)	189, 277
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	2 cut(s)	149, 274
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	35, 141
SetI	ASST	7 cut(s)	17, 68, 154, 234, 255, 307, 443
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	149
SnaBI	TACGTA	1 cut(s)	441
SphI	GCATGC	1 cut(s)	129
Sse9I	AATT	1 cut(s)	344
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	2 cut(s)	21, 210
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	33, 139
TaiI	ACGT	2 cut(s)	17, 443
TasI	AATT	1 cut(s)	344
TauI	GCSGC	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	64, 162, 368
TspGWI	ACGGA	2 cut(s)	280, 346
VpaK11BI	GGWCC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	43
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	2 cut(s)	21, 210
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.