Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003641

Physical Location & Seq

Genomic Coordinates Forward (+)

26216009 .. 26218071

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGATCCGGATCCGGATCATAACCATCGACCCAACTTCCCTCTCCAGCTTCTTGATTCTTCTACCTCCTCCTCTTCCACTTCCTTAGCCATCATCTCTACTACTTCCGAACCTAACTCCGAACCTAAGAAGCCTCCTCCTAAACGAACCTCTACTAAAGACCGACACACCAAAGTCGAAGGCCGAGGCCGTCGGATCCGTATGCCTGCCATGTGTGCTGCACGTGTCTTTCAGCTCACACGTGAGCTTGGTCACAAATCCGACGGTGAAACTATTGAGTGGCTACTCCAACAAGCAGAACCAGCGGTTATAGCCGCTACAGGGACTGGAACCATTCCGGCTAACTTCACTTCTTTAAACATCTCACTTCGTAGCTCAAGATCTTCTCTCTCTGCTGCTCATCTTCGTACAACTCCTAGTAGCTATTACTTTCATTCACCACATCAGTCCATGACTCATCATCTTCAACATCAGCATCAGGTTCGTCCCAAGAACGAGTCACATTCTTCGTCTTCTTCTTCTTCACAGCTTTTAGATCACAACCAAATGGGTAACTATCTAGTACAATCAACTGCTGGATCTTTACCTACGAGTCAGAGTCCTGCAACGGCACCGTTTTGGAGTAGTGGTGACAACACACAGAATCTTTGGGCTTTTAATATTAATCCTCATCATTCCGGTGTTGTCGCCGGAGATGTTTACAACCCCAACAGTGGTGGTAGTGGCGGCGGTAGTGGAGTTCATTTGATGAATTTTGCAGCTCCTATTGCTTTGTTTTCTGGACAGCCTTTGGCTTCTGGTTATGGAGGAGGAGGAGGTGGCGGTGGAGAACATAGCCATTATGGAGTTTTAGCGGCGTTGAATGCTGCTTACCGACCGGTGGCGGAGACGGGGAACCATAACAACAACCAGCAAAACCGTGACGGAGATCATCATCACAACCATCAAGAAGATGGAAGCACCAGTCATCATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009739 GO:0009791 GO:0009889 GO:0009908 GO:0009962 GO:0009987 GO:0010029 GO:0010033 GO:0010229 GO:0010252 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0031323 GO:0031326 GO:0031347 GO:0031537 GO:0031540 GO:0032501 GO:0032502 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048511 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0097305 GO:0140110 GO:1900140 GO:1901360 GO:1901576 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

325

Amino Acids

34.75

Weight (kDa)

7.15

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	50 - 172	3.8e-35	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69690
fragaria_vesca	FvH4_4g31520 FvH4_5g15150
malus_domestica	MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1
prunus_persica	Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1
pyrus_communis	pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480
rosa_chinensis	RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021
rosa_laevigata	RLG00000005218 RLG00000006215
rosa_multiflora	Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272330 Rroxscaffold_5G00380970
rosa_rugosa	Rorug04G0323300 Rorug06G0438600
rosa_samantha	Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400
rosa_wichuraiana	Rw4G032020 Rw7G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	610
AccIII	TCCGGA	2 cut(s)	7, 13
AciI	CCGC	7 cut(s)	305, 315, 726, 729, 822, 854, 884
AclWI	GGATC	7 cut(s)	5, 12, 18, 24, 190, 203, 586
AcsI	RAATTY	1 cut(s)	751
AcvI	CACGTG	2 cut(s)	224, 242
AfaI	GTAC	2 cut(s)	409, 564
AfiI	CCNNNNNNNGG	3 cut(s)	321, 713, 880
AflIII	ACRYGT	2 cut(s)	223, 239
AgeI	ACCGGT	1 cut(s)	877
AgsI	TTSAA	2 cut(s)	467, 862
AluBI	AGCT	7 cut(s)	49, 235, 247, 375, 423, 529, 761
AluI	AGCT	7 cut(s)	49, 235, 247, 375, 423, 529, 761
Alw26I	GTCTC	1 cut(s)	881
AlwI	GGATC	7 cut(s)	5, 12, 18, 24, 190, 203, 586
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor13HI	TCCGGA	2 cut(s)	7, 13
AoxI	GGCC	2 cut(s)	181, 187
ApeKI	GCWGC	4 cut(s)	218, 395, 758, 866
ApoI	RAATTY	1 cut(s)	751
AseI	ATTAAT	1 cut(s)	663
AsiGI	ACCGGT	1 cut(s)	877
AsuHPI	GGTGA	3 cut(s)	278, 429, 641
BamHI	GGATCC	3 cut(s)	4, 10, 195
BanI	GGYRCC	1 cut(s)	610
BbrPI	CACGTG	2 cut(s)	224, 242
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	4 cut(s)	205, 382, 770, 853
BccI	CCATC	4 cut(s)	33, 98, 947, 951
BceAI	ACGGC	2 cut(s)	174, 624
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BcoDI	GTCTC	1 cut(s)	881
BfaI	CTAG	3 cut(s)	417, 560, 976
BfmI	CTRYAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	380
BisI	GCNGC	7 cut(s)	219, 315, 396, 727, 759, 855, 867
BlsI	GCNGC	7 cut(s)	220, 316, 397, 728, 760, 856, 868
BmiI	GGNNCC	6 cut(s)	6, 12, 197, 331, 612, 896
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	361
BsaAI	YACGTR	2 cut(s)	224, 242
BsaBI	GATNNNNATC	3 cut(s)	9, 15, 933
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	4 cut(s)	7, 13, 677, 877
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 713, 880
Bse118I	RCCGGY	1 cut(s)	877
Bse1I	ACTGG	2 cut(s)	331, 963
Bse8I	GATNNNNATC	3 cut(s)	9, 15, 933
BseAI	TCCGGA	2 cut(s)	7, 13
BseDI	CCNNGG	1 cut(s)	184
BseJI	GATNNNNATC	3 cut(s)	9, 15, 933
BseLI	CCNNNNNNNGG	3 cut(s)	321, 713, 880
BseNI	ACTGG	2 cut(s)	331, 963
BseRI	GAGGAG	6 cut(s)	58, 61, 126, 822, 825, 828
BseXI	GCAGC	4 cut(s)	205, 382, 770, 853
BsgI	GTGCAG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	878
BshFI	GGCC	2 cut(s)	183, 189
BshNI	GGYRCC	1 cut(s)	610
BshTI	ACCGGT	1 cut(s)	877
BsiEI	CGRYCG	1 cut(s)	878
BsiSI	CCGG	6 cut(s)	8, 14, 338, 678, 690, 878
BslFI	GGGAC	2 cut(s)	337, 471
BslI	CCNNNNNNNGG	3 cut(s)	321, 713, 880
BsmAI	GTCTC	1 cut(s)	881
BsmBI	CGTCTC	1 cut(s)	881
BsmFI	GGGAC	2 cut(s)	337, 471
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	2 cut(s)	183, 189
Bsp13I	TCCGGA	2 cut(s)	7, 13
Bsp143I	GATC	8 cut(s)	4, 10, 16, 195, 380, 535, 578, 928
BspACI	CCGC	7 cut(s)	305, 315, 726, 729, 822, 854, 884
BspANI	GGCC	2 cut(s)	183, 189
BspEI	TCCGGA	2 cut(s)	7, 13
BspLI	GGNNCC	6 cut(s)	6, 12, 197, 331, 612, 896
BspPI	GGATC	7 cut(s)	5, 12, 18, 24, 190, 203, 586
BspT107I	GGYRCC	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	877
BsrI	ACTGG	2 cut(s)	331, 963
BssAI	RCCGGY	1 cut(s)	877
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	8 cut(s)	4, 10, 16, 195, 380, 535, 578, 928
Bst4CI	ACNGT	4 cut(s)	266, 615, 713, 920
Bst6I	CTCTTC	1 cut(s)	79
BstBAI	YACGTR	2 cut(s)	224, 242
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	85, 126
BstKTI	GATC	8 cut(s)	7, 13, 19, 198, 383, 538, 581, 931
BstMAI	GTCTC	1 cut(s)	881
BstMBI	GATC	8 cut(s)	4, 10, 16, 195, 380, 535, 578, 928
BstMCI	CGRYCG	1 cut(s)	878
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 302, 311, 767, 863
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	4 cut(s)	205, 382, 770, 853
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	5 cut(s)	4, 10, 195, 380, 578
BstYI	RGATCY	5 cut(s)	4, 10, 195, 380, 578
BsuRI	GGCC	2 cut(s)	183, 189
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	877
Csp6I	GTAC	2 cut(s)	408, 563
CspAI	ACCGGT	1 cut(s)	877
CspCI	CAANNNNNGTGG	2 cut(s)	697, 732
CviAII	CATG	2 cut(s)	211, 451
CviQI	GTAC	2 cut(s)	408, 563
DdeI	CTNAG	2 cut(s)	85, 126
DpnI	GATC	8 cut(s)	6, 12, 18, 197, 382, 537, 580, 930
DpnII	GATC	8 cut(s)	4, 10, 16, 195, 380, 535, 578, 928
DraI	TTTAAA	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	899
Eco72I	CACGTG	2 cut(s)	224, 242
Esp3I	CGTCTC	1 cut(s)	881
FaeI	CATG	2 cut(s)	214, 454
FaiI	YATR	9 cut(s)	21, 203, 212, 311, 452, 804, 834, 843, 900
FaqI	GGGAC	2 cut(s)	337, 471
FatI	CATG	2 cut(s)	210, 450
Fnu4HI	GCNGC	7 cut(s)	219, 315, 396, 727, 759, 855, 867
Fsp4HI	GCNGC	7 cut(s)	219, 315, 396, 727, 759, 855, 867
FspBI	CTAG	3 cut(s)	417, 560, 976
GluI	GCNGC	7 cut(s)	219, 315, 396, 727, 759, 855, 867
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	183, 189
HapII	CCGG	6 cut(s)	8, 14, 338, 678, 690, 878
Hin1II	CATG	2 cut(s)	214, 454
HinfI	GANTC	6 cut(s)	56, 454, 497, 592, 598, 643
HpaII	CCGG	6 cut(s)	8, 14, 338, 678, 690, 878
HphI	GGTGA	3 cut(s)	278, 429, 641
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	5 cut(s)	109, 121, 195, 262, 597
Hpy188III	TCNNGA	6 cut(s)	8, 14, 53, 378, 780, 947
Hpy8I	GTNNAC	1 cut(s)	700
Hpy99I	CGWCG	2 cut(s)	195, 266
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	4 cut(s)	266, 615, 713, 920
HpyCH4IV	ACGT	2 cut(s)	223, 241
HpyCH4V	TGCA	3 cut(s)	221, 605, 758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 302, 311, 767, 863
HpyF3I	CTNAG	2 cut(s)	85, 126
HpySE526I	ACGT	2 cut(s)	223, 241
Hsp92II	CATG	2 cut(s)	214, 454
Kpn2I	TCCGGA	2 cut(s)	7, 13
Kzo9I	GATC	8 cut(s)	4, 10, 16, 195, 380, 535, 578, 928
LmnI	GCTCC	1 cut(s)	766
Lsp1109I	GCAGC	4 cut(s)	205, 382, 770, 853
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	3 cut(s)	417, 560, 976
MaeII	ACGT	2 cut(s)	223, 241
MaeIII	GTNAC	5 cut(s)	251, 498, 551, 629, 920
MalI	GATC	8 cut(s)	6, 12, 18, 197, 382, 537, 580, 930
MboI	GATC	8 cut(s)	4, 10, 16, 195, 380, 535, 578, 928
MflI	RGATCY	5 cut(s)	4, 10, 195, 380, 578
MluCI	AATT	1 cut(s)	751
MlyI	GAGTC	4 cut(s)	448, 506, 601, 607
MmeI	TCCRAC	3 cut(s)	173, 285, 313
MroI	TCCGGA	2 cut(s)	7, 13
MseI	TTAA	3 cut(s)	356, 657, 663
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	6 cut(s)	8, 14, 338, 678, 690, 878
Mva1269I	GAATGC	1 cut(s)	868
MwoI	GCNNNNNNNGC	5 cut(s)	215, 302, 311, 767, 863
NdeII	GATC	8 cut(s)	4, 10, 16, 195, 380, 535, 578, 928
NlaIII	CATG	2 cut(s)	214, 454
NlaIV	GGNNCC	6 cut(s)	6, 12, 197, 331, 612, 896
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	4 cut(s)	251, 498, 629, 920
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	2 cut(s)	56, 643
PinAI	ACCGGT	1 cut(s)	877
PkrI	GCNGC	7 cut(s)	220, 316, 397, 728, 760, 856, 868
PleI	GAGTC	4 cut(s)	448, 505, 600, 606
PmaCI	CACGTG	2 cut(s)	224, 242
PmlI	CACGTG	2 cut(s)	224, 242
PpsI	GAGTC	4 cut(s)	448, 505, 600, 606
Ppu21I	YACGTR	2 cut(s)	224, 242
PshBI	ATTAAT	1 cut(s)	663
PspCI	CACGTG	2 cut(s)	224, 242
PspN4I	GGNNCC	6 cut(s)	6, 12, 197, 331, 612, 896
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	5 cut(s)	4, 10, 195, 380, 578
RsaI	GTAC	2 cut(s)	409, 564
RsaNI	GTAC	2 cut(s)	408, 563
RseI	CAYNNNNRTG	1 cut(s)	678
SaqAI	TTAA	3 cut(s)	356, 657, 663
SatI	GCNGC	7 cut(s)	219, 315, 396, 727, 759, 855, 867
Sau3AI	GATC	8 cut(s)	4, 10, 16, 195, 380, 535, 578, 928
SchI	GAGTC	4 cut(s)	448, 506, 601, 607
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	751
SsiI	CCGC	7 cut(s)	305, 315, 726, 729, 822, 854, 884
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	3 cut(s)	417, 560, 976
TaaI	ACNGT	4 cut(s)	266, 615, 713, 920
TaiI	ACGT	2 cut(s)	226, 244
TaqI	TCGA	2 cut(s)	28, 177
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	751
TatI	WGTACW	1 cut(s)	562
TauI	GCSGC	3 cut(s)	317, 729, 857
TfiI	GAWTC	2 cut(s)	56, 643
Tru1I	TTAA	3 cut(s)	356, 657, 663
Tru9I	TTAA	3 cut(s)	356, 657, 663
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	4 cut(s)	251, 498, 629, 920
TseI	GCWGC	4 cut(s)	218, 395, 758, 866
Tsp45I	GTSAC	4 cut(s)	251, 498, 629, 920
TspDTI	ATGAA	3 cut(s)	422, 731, 764
TspGWI	ACGGA	2 cut(s)	188, 939
TspRI	CASTG	1 cut(s)	718
VspI	ATTAAT	1 cut(s)	663
XapI	RAATTY	1 cut(s)	751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XspI	CTAG	3 cut(s)	417, 560, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.