Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003641

Physical Location & Seq

Genomic Coordinates Reverse (-)

18729613 .. 18730074

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGAGGTGGCGGCGGTGGTGGTGGAGGAGGGTACTTATTGCAGTCGAGCACTGGTGCGGTCCCGGCCAGCCACCCACACAGTCAGATTCCGGCTAATTTTTGGATGCTGGCTAACTCTAACAACCAAGTTATGAGCGGAGACCCTATTTGGACTTTTCCAGCTTCGGTCAACAACAGTGGAATGTATAGAGGAACGATGCCCGGTGGCTTACATTTTATGAATTTCCCCGCCCCAGTCACCGTGTTGCCTAATCAACAACAATTGAGTGGCTCGGGCGGCGGCGGTGGTGGTAATGATGGCGATAACATGAGCGATGGGCAGTTGAATATGCTCGCTGGACTCAATCCGTACCGGCACATGTCCGGTACAGGTGTTTCAGACTCGCAGCAGGCAAGTGGCGCACACTCACACCACGGCGGGGGTGACGATCGGCACGATAGTACTAGTCACCACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009739 GO:0009791 GO:0009889 GO:0010029 GO:0010033 GO:0010229 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031347 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0090567 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

154

Amino Acids

15.47

Weight (kDa)

5.98

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69690
fragaria_vesca	FvH4_4g31520 FvH4_5g15150
malus_domestica	MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1
prunus_persica	Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1
pyrus_communis	pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480
rosa_chinensis	RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021
rosa_laevigata	RLG00000005218 RLG00000006215
rosa_multiflora	Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272330 Rroxscaffold_5G00380970
rosa_rugosa	Rorug04G0323300 Rorug06G0438600
rosa_samantha	Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400
rosa_wichuraiana	Rw4G032020 Rw7G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	138
AciI	CCGC	9 cut(s)	12, 15, 59, 138, 231, 279, 282, 285, 420
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	4 cut(s)	35, 353, 370, 445
AfiI	CCNNNNNNNGG	1 cut(s)	421
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	1 cut(s)	328
AhlI	ACTAGT	1 cut(s)	446
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	2 cut(s)	65, 204
AsuHPI	GGTGA	3 cut(s)	232, 437, 443
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	61
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	2 cut(s)	293, 311
BceAI	ACGGC	1 cut(s)	433
BcnI	CCSGG	2 cut(s)	65, 204
BcoDI	GTCTC	1 cut(s)	135
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	1 cut(s)	447
BisI	GCNGC	4 cut(s)	13, 280, 283, 389
BlsI	GCNGC	4 cut(s)	14, 281, 284, 390
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	65, 204
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	2 cut(s)	65, 204
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	96, 189
BmuI	ACTGGG	1 cut(s)	230
BpuMI	CCSGG	2 cut(s)	65, 204
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	58, 236
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseNI	ACTGG	2 cut(s)	58, 236
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	400
Bsh1285I	CGRYCG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	5 cut(s)	65, 92, 204, 355, 366
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	135
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	430
BspACI	CCGC	9 cut(s)	12, 15, 59, 138, 231, 279, 282, 285, 420
BspANI	GGCC	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	58, 236
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	83, 179, 244
BstC8I	GCNNGC	4 cut(s)	70, 111, 336, 393
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	430
BstMCI	CGRYCG	1 cut(s)	433
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 279, 401
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	63, 202
BstV1I	GCAGC	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	415
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	51, 184
Cac8I	GCNNGC	4 cut(s)	70, 111, 336, 393
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	4 cut(s)	34, 352, 369, 444
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	2 cut(s)	310, 361
CviJI	RGCY	7 cut(s)	68, 72, 95, 113, 164, 210, 273
CviKI_1	RGCY	7 cut(s)	68, 72, 95, 113, 164, 210, 273
CviQI	GTAC	4 cut(s)	34, 352, 369, 444
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	274
FaeI	CATG	2 cut(s)	313, 364
FaiI	YATR	7 cut(s)	134, 189, 221, 311, 332, 362, 460
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	309, 360
FauI	CCCGC	2 cut(s)	238, 413
Fnu4HI	GCNGC	4 cut(s)	13, 280, 283, 389
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	13, 280, 283, 389
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	4 cut(s)	13, 280, 283, 389
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	5 cut(s)	65, 92, 204, 355, 366
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	313, 364
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	88, 342, 383
HpaII	CCGG	5 cut(s)	65, 92, 204, 355, 366
HphI	GGTGA	3 cut(s)	232, 437, 443
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	87, 382
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4III	ACNGT	3 cut(s)	83, 179, 244
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 279, 401
Hsp92II	CATG	2 cut(s)	313, 364
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	430
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	2 cut(s)	96, 189
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	238, 425, 449
MalI	GATC	1 cut(s)	432
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	1 cut(s)	430
MfeI	CAATTG	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	3 cut(s)	97, 223, 263
MlyI	GAGTC	2 cut(s)	336, 377
MnlI	CCTC	3 cut(s)	20, 23, 185
MspI	CCGG	5 cut(s)	65, 92, 204, 355, 366
MspR9I	CCNGG	2 cut(s)	65, 204
MunI	CAATTG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	65, 279, 401
NciI	CCSGG	2 cut(s)	65, 204
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	2 cut(s)	313, 364
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	3 cut(s)	238, 425, 449
NspI	RCATGY	1 cut(s)	364
PciI	ACATGT	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	4 cut(s)	14, 281, 284, 390
Ple19I	CGATCG	1 cut(s)	433
PleI	GAGTC	2 cut(s)	336, 377
PpsI	GAGTC	2 cut(s)	336, 377
PscI	ACATGT	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	61
PvuI	CGATCG	1 cut(s)	433
RsaI	GTAC	4 cut(s)	35, 353, 370, 445
RsaNI	GTAC	4 cut(s)	34, 352, 369, 444
SatI	GCNGC	4 cut(s)	13, 280, 283, 389
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	445
SchI	GAGTC	2 cut(s)	336, 377
ScrFI	CCNGG	2 cut(s)	65, 204
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	3 cut(s)	10, 166, 376
SfaNI	GCATC	2 cut(s)	96, 189
SinI	GGWCC	1 cut(s)	61
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	3 cut(s)	97, 223, 263
SsiI	CCGC	9 cut(s)	12, 15, 59, 138, 231, 279, 282, 285, 420
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	63, 202
TaaI	ACNGT	3 cut(s)	83, 179, 244
TaqI	TCGA	1 cut(s)	47
TaqII	GACCGA	1 cut(s)	157
TasI	AATT	3 cut(s)	97, 223, 263
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	3 cut(s)	15, 282, 285
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	2 cut(s)	58, 184
TseFI	GTSAC	3 cut(s)	238, 425, 449
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	3 cut(s)	238, 425, 449
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	58, 184
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	1 cut(s)	447
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.