Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69690 |
| fragaria_vesca | FvH4_4g31520 FvH4_5g15150 |
| malus_domestica | MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1 |
| prunus_persica | Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1 |
| pyrus_communis | pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480 |
| rosa_chinensis | RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021 |
| rosa_laevigata | RLG00000005218 RLG00000006215 |
| rosa_multiflora | Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00272330 Rroxscaffold_5G00380970 |
| rosa_rugosa | Rorug04G0323300 Rorug06G0438600 |
| rosa_samantha | Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400 |
| rosa_wichuraiana | Rw4G032020 Rw7G003280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 312 |
| AccB1I | GGYRCC | 2 cut(s) | 446, 517 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 402 |
| AccI | GTMKAC | 2 cut(s) | 300, 626 |
| AccII | CGCG | 2 cut(s) | 309, 366 |
| AclWI | GGATC | 1 cut(s) | 717 |
| AcoI | YGGCCR | 3 cut(s) | 310, 373, 852 |
| AcsI | RAATTY | 3 cut(s) | 883, 901, 1009 |
| AcyI | GRCGYC | 1 cut(s) | 725 |
| AfaI | GTAC | 2 cut(s) | 1156, 1228 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 402, 592, 877, 952 |
| AflIII | ACRYGT | 1 cut(s) | 1146 |
| AgsI | TTSAA | 2 cut(s) | 644, 781 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 622, 700 |
| AhlI | ACTAGT | 1 cut(s) | 1229 |
| AjnI | CCWGG | 2 cut(s) | 912, 988 |
| AleI | CACNNNNGTG | 1 cut(s) | 179 |
| AluBI | AGCT | 7 cut(s) | 97, 233, 358, 370, 621, 688, 950 |
| AluI | AGCT | 7 cut(s) | 97, 233, 358, 370, 621, 688, 950 |
| Alw21I | GWGCWC | 1 cut(s) | 372 |
| Alw26I | GTCTC | 4 cut(s) | 687, 713, 921, 1203 |
| AlwI | GGATC | 1 cut(s) | 717 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 688 |
| Ama87I | CYCGRG | 1 cut(s) | 505 |
| AoxI | GGCC | 7 cut(s) | 310, 330, 373, 601, 675, 761, 852 |
| ApeKI | GCWGC | 3 cut(s) | 97, 341, 688 |
| ApoI | RAATTY | 3 cut(s) | 883, 901, 1009 |
| AspLEI | GCGC | 3 cut(s) | 341, 579, 845 |
| AspS9I | GGNCC | 6 cut(s) | 184, 270, 283, 331, 981, 1188 |
| AsuC2I | CCSGG | 1 cut(s) | 851 |
| AsuHPI | GGTGA | 8 cut(s) | 23, 62, 166, 193, 352, 442, 557, 1226 |
| AsuII | TTCGAA | 1 cut(s) | 322 |
| AvaI | CYCGRG | 1 cut(s) | 505 |
| AvaII | GGWCC | 5 cut(s) | 184, 270, 283, 981, 1188 |
| BaeGI | GKGCMC | 1 cut(s) | 449 |
| BanI | GGYRCC | 2 cut(s) | 446, 517 |
| BanII | GRGCYC | 2 cut(s) | 246, 372 |
| BbsI | GAAGAC | 1 cut(s) | 343 |
| Bbv12I | GWGCWC | 1 cut(s) | 372 |
| BbvI | GCAGC | 3 cut(s) | 84, 328, 675 |
| BccI | CCATC | 5 cut(s) | 54, 179, 206, 404, 886 |
| BceAI | ACGGC | 3 cut(s) | 297, 738, 1102 |
| BciT130I | CCWGG | 2 cut(s) | 914, 990 |
| BciVI | GTATCC | 1 cut(s) | 812 |
| BclI | TGATCA | 1 cut(s) | 13 |
| BcnI | CCSGG | 1 cut(s) | 851 |
| BcoDI | GTCTC | 4 cut(s) | 687, 713, 921, 1203 |
| BcuI | ACTAGT | 1 cut(s) | 1229 |
| BfaI | CTAG | 4 cut(s) | 167, 834, 1038, 1230 |
| BfoI | RGCGCY | 1 cut(s) | 580 |
| BfuI | GTATCC | 1 cut(s) | 812 |
| BglII | AGATCT | 1 cut(s) | 533 |
| BisI | GCNGC | 9 cut(s) | 98, 129, 310, 342, 438, 689, 764, 799, 1069 |
| BlsI | GCNGC | 9 cut(s) | 99, 130, 311, 343, 439, 690, 765, 800, 1070 |
| BmcAI | AGTACT | 1 cut(s) | 1228 |
| Bme1390I | CCNGG | 3 cut(s) | 851, 914, 990 |
| Bme18I | GGWCC | 5 cut(s) | 184, 270, 283, 981, 1188 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 622, 700 |
| BmeT110I | CYCGRG | 1 cut(s) | 505 |
| BmgT120I | GGNCC | 6 cut(s) | 184, 270, 283, 331, 981, 1188 |
| BmiI | GGNNCC | 7 cut(s) | 186, 448, 519, 584, 982, 1189, 1190 |
| BmrFI | CCNGG | 3 cut(s) | 851, 914, 990 |
| BmsI | GCATC | 1 cut(s) | 606 |
| BpiI | GAAGAC | 1 cut(s) | 343 |
| BpmI | CTGGAG | 2 cut(s) | 395, 1083 |
| Bpu14I | TTCGAA | 1 cut(s) | 322 |
| BpuMI | CCSGG | 1 cut(s) | 851 |
| BsaBI | GATNNNNATC | 1 cut(s) | 18 |
| BsaHI | GRCGYC | 1 cut(s) | 725 |
| BsaI | GGTCTC | 1 cut(s) | 921 |
| BsaJI | CCNNGG | 3 cut(s) | 279, 612, 1201 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 134, 164, 710, 740 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 402, 592, 877, 952 |
| Bse118I | RCCGGY | 4 cut(s) | 328, 449, 839, 1140 |
| Bse1I | ACTGG | 1 cut(s) | 1152 |
| Bse8I | GATNNNNATC | 1 cut(s) | 18 |
| BseBI | CCWGG | 2 cut(s) | 914, 990 |
| BseDI | CCNNGG | 3 cut(s) | 279, 612, 1201 |
| BseGI | GGATG | 1 cut(s) | 897 |
| BseJI | GATNNNNATC | 1 cut(s) | 18 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 402, 592, 877, 952 |
| BseNI | ACTGG | 1 cut(s) | 1152 |
| BseRI | GAGGAG | 2 cut(s) | 249, 1221 |
| BseSI | GKGCMC | 1 cut(s) | 449 |
| BseX3I | CGGCCG | 1 cut(s) | 310 |
| BseXI | GCAGC | 3 cut(s) | 84, 328, 675 |
| BseYI | CCCAGC | 3 cut(s) | 946, 1124, 1173 |
| Bsh1236I | CGCG | 2 cut(s) | 309, 366 |
| Bsh1285I | CGRYCG | 3 cut(s) | 195, 313, 1216 |
| BshFI | GGCC | 7 cut(s) | 312, 332, 375, 603, 677, 763, 854 |
| BshNI | GGYRCC | 2 cut(s) | 446, 517 |
| BsiEI | CGRYCG | 3 cut(s) | 195, 313, 1216 |
| BsiHKAI | GWGCWC | 1 cut(s) | 372 |
| BsiHKCI | CYCGRG | 1 cut(s) | 505 |
| BsiSI | CCGG | 9 cut(s) | 329, 450, 501, 580, 767, 840, 851, 878, 1141 |
| BslFI | GGGAC | 3 cut(s) | 833, 994, 1174 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 402, 592, 877, 952 |
| BsmAI | GTCTC | 4 cut(s) | 687, 713, 921, 1203 |
| BsmBI | CGTCTC | 2 cut(s) | 713, 1203 |
| BsmFI | GGGAC | 3 cut(s) | 833, 994, 1174 |
| BsmI | GAATGC | 2 cut(s) | 318, 330 |
| BsnI | GGCC | 7 cut(s) | 312, 332, 375, 603, 677, 763, 854 |
| Bso31I | GGTCTC | 1 cut(s) | 921 |
| BsoBI | CYCGRG | 1 cut(s) | 505 |
| Bsp119I | TTCGAA | 1 cut(s) | 322 |
| Bsp1286I | GDGCHC | 3 cut(s) | 246, 372, 449 |
| Bsp143I | GATC | 7 cut(s) | 13, 19, 118, 432, 533, 709, 1213 |
| BspANI | GGCC | 7 cut(s) | 312, 332, 375, 603, 677, 763, 854 |
| BspFNI | CGCG | 2 cut(s) | 309, 366 |
| BspHI | TCATGA | 1 cut(s) | 1005 |
| BspLI | GGNNCC | 7 cut(s) | 186, 448, 519, 584, 982, 1189, 1190 |
| BspPI | GGATC | 1 cut(s) | 717 |
| BspT104I | TTCGAA | 1 cut(s) | 322 |
| BspT107I | GGYRCC | 2 cut(s) | 446, 517 |
| BspTNI | GGTCTC | 1 cut(s) | 921 |
| BsrFI | RCCGGY | 4 cut(s) | 328, 449, 839, 1140 |
| BsrI | ACTGG | 1 cut(s) | 1152 |
| BssAI | RCCGGY | 4 cut(s) | 328, 449, 839, 1140 |
| BssECI | CCNNGG | 3 cut(s) | 279, 612, 1201 |
| BssMI | GATC | 7 cut(s) | 13, 19, 118, 432, 533, 709, 1213 |
| BssNI | GRCGYC | 1 cut(s) | 725 |
| BssT1I | CCWWGG | 1 cut(s) | 279 |
| Bst2UI | CCWGG | 2 cut(s) | 914, 990 |
| Bst4CI | ACNGT | 3 cut(s) | 77, 181, 700 |
| BstACI | GRCGYC | 1 cut(s) | 725 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 688 |
| BstBI | TTCGAA | 1 cut(s) | 322 |
| BstDSI | CCRYGG | 1 cut(s) | 1201 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 590 |
| BstF5I | GGATG | 1 cut(s) | 897 |
| BstFNI | CGCG | 2 cut(s) | 309, 366 |
| BstH2I | RGCGCY | 1 cut(s) | 580 |
| BstHHI | GCGC | 3 cut(s) | 341, 579, 845 |
| BstKTI | GATC | 7 cut(s) | 16, 22, 121, 435, 536, 712, 1216 |
| BstMAI | GTCTC | 4 cut(s) | 687, 713, 921, 1203 |
| BstMBI | GATC | 7 cut(s) | 13, 19, 118, 432, 533, 709, 1213 |
| BstMCI | CGRYCG | 3 cut(s) | 195, 313, 1216 |
| BstNI | CCWGG | 2 cut(s) | 914, 990 |
| BstNSI | RCATGY | 3 cut(s) | 514, 658, 1150 |
| BstSCI | CCNGG | 3 cut(s) | 849, 912, 988 |
| BstSLI | GKGCMC | 1 cut(s) | 449 |
| BstUI | CGCG | 2 cut(s) | 309, 366 |
| BstV1I | GCAGC | 3 cut(s) | 84, 328, 675 |
| BstV2I | GAAGAC | 1 cut(s) | 343 |
| BstX2I | RGATCY | 2 cut(s) | 533, 709 |
| BstYI | RGATCY | 2 cut(s) | 533, 709 |
| BstZI | CGGCCG | 1 cut(s) | 310 |
| BsuI | GTATCC | 1 cut(s) | 812 |
| BsuRI | GGCC | 7 cut(s) | 312, 332, 375, 603, 677, 763, 854 |
| BtgI | CCRYGG | 1 cut(s) | 1201 |
| BtgZI | GCGATG | 1 cut(s) | 459 |
| BtsCI | GGATG | 1 cut(s) | 897 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| CaiI | CAGNNNCTG | 1 cut(s) | 688 |
| CciI | TCATGA | 1 cut(s) | 1005 |
| CfoI | GCGC | 3 cut(s) | 341, 579, 845 |
| Cfr10I | RCCGGY | 4 cut(s) | 328, 449, 839, 1140 |
| Cfr13I | GGNCC | 6 cut(s) | 184, 270, 283, 331, 981, 1188 |
| CseI | GACGC | 2 cut(s) | 315, 714 |
| CsiI | ACCWGGT | 1 cut(s) | 912 |
| Csp6I | GTAC | 2 cut(s) | 1155, 1227 |
| CviAII | CATG | 9 cut(s) | 511, 655, 667, 742, 985, 1006, 1096, 1147, 1220 |
| CviQI | GTAC | 2 cut(s) | 1155, 1227 |
| DpnI | GATC | 7 cut(s) | 15, 21, 120, 434, 535, 711, 1215 |
| DpnII | GATC | 7 cut(s) | 13, 19, 118, 432, 533, 709, 1213 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 312 |
| DriI | GACNNNNNGTC | 2 cut(s) | 622, 700 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 312 |
| EaeI | YGGCCR | 3 cut(s) | 310, 373, 852 |
| EagI | CGGCCG | 1 cut(s) | 310 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 622, 700 |
| EciI | GGCGGA | 1 cut(s) | 226 |
| Ecl136II | GAGCTC | 1 cut(s) | 370 |
| EclXI | CGGCCG | 1 cut(s) | 310 |
| Eco130I | CCWWGG | 1 cut(s) | 279 |
| Eco24I | GRGCYC | 2 cut(s) | 246, 372 |
| Eco31I | GGTCTC | 1 cut(s) | 921 |
| Eco47I | GGWCC | 5 cut(s) | 184, 270, 283, 981, 1188 |
| Eco52I | CGGCCG | 1 cut(s) | 310 |
| Eco53kI | GAGCTC | 1 cut(s) | 370 |
| Eco88I | CYCGRG | 1 cut(s) | 505 |
| EcoICRI | GAGCTC | 1 cut(s) | 370 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 590 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1188 |
| EcoRI | GAATTC | 1 cut(s) | 901 |
| EcoRII | CCWGG | 2 cut(s) | 912, 988 |
| EcoT14I | CCWWGG | 1 cut(s) | 279 |
| EcoT38I | GRGCYC | 2 cut(s) | 246, 372 |
| ErhI | CCWWGG | 1 cut(s) | 279 |
| Esp3I | CGTCTC | 2 cut(s) | 713, 1203 |
| FaeI | CATG | 9 cut(s) | 514, 658, 670, 745, 988, 1009, 1099, 1150, 1223 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 523, 555 |
| FaqI | GGGAC | 3 cut(s) | 833, 994, 1174 |
| FatI | CATG | 9 cut(s) | 510, 654, 666, 741, 984, 1005, 1095, 1146, 1219 |
| FauI | CCCGC | 4 cut(s) | 371, 469, 785, 959 |
| FbaI | TGATCA | 1 cut(s) | 13 |
| FblI | GTMKAC | 2 cut(s) | 300, 626 |
| Fnu4HI | GCNGC | 9 cut(s) | 98, 129, 310, 342, 438, 689, 764, 799, 1069 |
| FokI | GGATG | 1 cut(s) | 904 |
| FriOI | GRGCYC | 2 cut(s) | 246, 372 |
| Fsp4HI | GCNGC | 9 cut(s) | 98, 129, 310, 342, 438, 689, 764, 799, 1069 |
| FspBI | CTAG | 4 cut(s) | 167, 834, 1038, 1230 |
| GlaI | GCGC | 3 cut(s) | 340, 578, 844 |
| GluI | GCNGC | 9 cut(s) | 98, 129, 310, 342, 438, 689, 764, 799, 1069 |
| GsaI | CCCAGC | 3 cut(s) | 950, 1128, 1177 |
| GsuI | CTGGAG | 2 cut(s) | 395, 1083 |
| HaeII | RGCGCY | 1 cut(s) | 580 |
| HaeIII | GGCC | 7 cut(s) | 312, 332, 375, 603, 677, 763, 854 |
| HapII | CCGG | 9 cut(s) | 329, 450, 501, 580, 767, 840, 851, 878, 1141 |
| HgaI | GACGC | 2 cut(s) | 315, 714 |
| HhaI | GCGC | 3 cut(s) | 341, 579, 845 |
| Hin1I | GRCGYC | 1 cut(s) | 725 |
| Hin1II | CATG | 9 cut(s) | 514, 658, 670, 745, 988, 1009, 1099, 1150, 1223 |
| Hin6I | GCGC | 3 cut(s) | 339, 577, 843 |
| HinP1I | GCGC | 3 cut(s) | 339, 577, 843 |
| HincII | GTYRAC | 3 cut(s) | 301, 627, 958 |
| HindII | GTYRAC | 3 cut(s) | 301, 627, 958 |
| HindIII | AAGCTT | 1 cut(s) | 231 |
| HinfI | GANTC | 5 cut(s) | 348, 628, 781, 874, 1169 |
| HpaII | CCGG | 9 cut(s) | 329, 450, 501, 580, 767, 840, 851, 878, 1141 |
| HphI | GGTGA | 8 cut(s) | 23, 62, 166, 193, 352, 442, 557, 1226 |
| Hpy166II | GTNNAC | 5 cut(s) | 184, 301, 565, 627, 958 |
| Hpy188I | TCNGA | 4 cut(s) | 385, 616, 718, 1168 |
| Hpy188III | TCNNGA | 4 cut(s) | 17, 122, 1006, 1062 |
| Hpy8I | GTNNAC | 5 cut(s) | 184, 301, 565, 627, 958 |
| Hpy99I | CGWCG | 5 cut(s) | 305, 318, 628, 730, 1088 |
| HpyAV | CCTTC | 3 cut(s) | 103, 171, 531 |
| HpyCH4III | ACNGT | 3 cut(s) | 77, 181, 700 |
| HpyCH4V | TGCA | 4 cut(s) | 344, 658, 673, 829 |
| Hsp92I | GRCGYC | 1 cut(s) | 725 |
| Hsp92II | CATG | 9 cut(s) | 514, 658, 670, 745, 988, 1009, 1099, 1150, 1223 |
| HspAI | GCGC | 3 cut(s) | 339, 577, 843 |
| KflI | GGGWCCC | 1 cut(s) | 1188 |
| KroI | GCCGGC | 1 cut(s) | 328 |
| KroNI | GCCGGC | 1 cut(s) | 330 |
| Ksp22I | TGATCA | 1 cut(s) | 13 |
| Kzo9I | GATC | 7 cut(s) | 13, 19, 118, 432, 533, 709, 1213 |
| LmnI | GCTCC | 6 cut(s) | 495, 582, 685, 738, 769, 1024 |
| Lsp1109I | GCAGC | 3 cut(s) | 84, 328, 675 |
| LweI | GCATC | 1 cut(s) | 606 |
| MabI | ACCWGGT | 1 cut(s) | 912 |
| MaeI | CTAG | 4 cut(s) | 167, 834, 1038, 1230 |
| MaeIII | GTNAC | 4 cut(s) | 996, 1079, 1100, 1232 |
| MalI | GATC | 7 cut(s) | 15, 21, 120, 434, 535, 711, 1215 |
| MboI | GATC | 7 cut(s) | 13, 19, 118, 432, 533, 709, 1213 |
| MboII | GAAGA | 2 cut(s) | 343, 528 |
| MfeI | CAATTG | 1 cut(s) | 1049 |
| MflI | RGATCY | 2 cut(s) | 533, 709 |
| MhlI | GDGCHC | 3 cut(s) | 246, 372, 449 |
| MluCI | AATT | 6 cut(s) | 466, 553, 883, 901, 1009, 1049 |
| MlyI | GAGTC | 2 cut(s) | 357, 622 |
| MmeI | TCCRAC | 1 cut(s) | 687 |
| MroNI | GCCGGC | 1 cut(s) | 328 |
| MseI | TTAA | 3 cut(s) | 530, 1112, 1131 |
| MslI | CAYNNNNRTG | 3 cut(s) | 179, 323, 515 |
| MspA1I | CMGCKG | 3 cut(s) | 97, 428, 966 |
| MspI | CCGG | 9 cut(s) | 329, 450, 501, 580, 767, 840, 851, 878, 1141 |
| MspR9I | CCNGG | 3 cut(s) | 851, 914, 990 |
| MunI | CAATTG | 1 cut(s) | 1049 |
| Mva1269I | GAATGC | 2 cut(s) | 318, 330 |
| MvaI | CCWGG | 2 cut(s) | 914, 990 |
| MvnI | CGCG | 2 cut(s) | 309, 366 |
| NaeI | GCCGGC | 1 cut(s) | 330 |
| NciI | CCSGG | 1 cut(s) | 851 |
| NdeII | GATC | 7 cut(s) | 13, 19, 118, 432, 533, 709, 1213 |
| NgoMIV | GCCGGC | 1 cut(s) | 328 |
| NlaIII | CATG | 9 cut(s) | 514, 658, 670, 745, 988, 1009, 1099, 1150, 1223 |
| NlaIV | GGNNCC | 7 cut(s) | 186, 448, 519, 584, 982, 1189, 1190 |
| NmeAIII | GCCGAG | 2 cut(s) | 265, 351 |
| NmuCI | GTSAC | 2 cut(s) | 1100, 1232 |
| NspI | RCATGY | 3 cut(s) | 514, 658, 1150 |
| NspV | TTCGAA | 1 cut(s) | 322 |
| OliI | CACNNNNGTG | 1 cut(s) | 179 |
| PaeI | GCATGC | 1 cut(s) | 658 |
| PaeR7I | CTCGAG | 1 cut(s) | 505 |
| PagI | TCATGA | 1 cut(s) | 1005 |
| PciI | ACATGT | 1 cut(s) | 1146 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 620, 722, 1209 |
| PctI | GAATGC | 2 cut(s) | 318, 330 |
| PdiI | GCCGGC | 1 cut(s) | 330 |
| PfeI | GAWTC | 3 cut(s) | 781, 874, 1169 |
| PflFI | GACNNNGTC | 1 cut(s) | 724 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 402 |
| PkrI | GCNGC | 9 cut(s) | 99, 130, 311, 343, 439, 690, 765, 800, 1070 |
| Ple19I | CGATCG | 1 cut(s) | 1216 |
| PleI | GAGTC | 2 cut(s) | 356, 622 |
| PpsI | GAGTC | 2 cut(s) | 356, 622 |
| PpuMI | RGGWCCY | 1 cut(s) | 1188 |
| PscI | ACATGT | 1 cut(s) | 1146 |
| Psp124BI | GAGCTC | 1 cut(s) | 372 |
| Psp5II | RGGWCCY | 1 cut(s) | 1188 |
| Psp6I | CCWGG | 2 cut(s) | 912, 988 |
| PspFI | CCCAGC | 3 cut(s) | 946, 1124, 1173 |
| PspGI | CCWGG | 2 cut(s) | 912, 988 |
| PspN4I | GGNNCC | 7 cut(s) | 186, 448, 519, 584, 982, 1189, 1190 |
| PspPI | GGNCC | 6 cut(s) | 184, 270, 283, 331, 981, 1188 |
| PspPPI | RGGWCCY | 1 cut(s) | 1188 |
| PspXI | VCTCGAGB | 1 cut(s) | 505 |
| PstNI | CAGNNNCTG | 1 cut(s) | 688 |
| PsuI | RGATCY | 2 cut(s) | 533, 709 |
| PsyI | GACNNNGTC | 1 cut(s) | 724 |
| PvuI | CGATCG | 1 cut(s) | 1216 |
| PvuII | CAGCTG | 1 cut(s) | 97 |
| RsaI | GTAC | 2 cut(s) | 1156, 1228 |
| RsaNI | GTAC | 2 cut(s) | 1155, 1227 |
| RseI | CAYNNNNRTG | 3 cut(s) | 179, 323, 515 |
| SacI | GAGCTC | 1 cut(s) | 372 |
| SalI | GTCGAC | 2 cut(s) | 299, 625 |
| SaqAI | TTAA | 3 cut(s) | 530, 1112, 1131 |
| SatI | GCNGC | 9 cut(s) | 98, 129, 310, 342, 438, 689, 764, 799, 1069 |
| Sau3AI | GATC | 7 cut(s) | 13, 19, 118, 432, 533, 709, 1213 |
| Sau96I | GGNCC | 6 cut(s) | 184, 270, 283, 331, 981, 1188 |
| ScaI | AGTACT | 1 cut(s) | 1228 |
| SchI | GAGTC | 2 cut(s) | 357, 622 |
| ScrFI | CCNGG | 3 cut(s) | 851, 914, 990 |
| SduI | GDGCHC | 3 cut(s) | 246, 372, 449 |
| SexAI | ACCWGGT | 1 cut(s) | 912 |
| SfaNI | GCATC | 1 cut(s) | 606 |
| Sfr274I | CTCGAG | 1 cut(s) | 505 |
| SfuI | TTCGAA | 1 cut(s) | 322 |
| SgrAI | CRCCGGYG | 1 cut(s) | 839 |
| SinI | GGWCC | 5 cut(s) | 184, 270, 283, 981, 1188 |
| SlaI | CTCGAG | 1 cut(s) | 505 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 179, 323, 515 |
| SmlI | CTYRAG | 1 cut(s) | 505 |
| SmoI | CTYRAG | 1 cut(s) | 505 |
| SpeI | ACTAGT | 1 cut(s) | 1229 |
| SphI | GCATGC | 1 cut(s) | 658 |
| Sse9I | AATT | 6 cut(s) | 466, 553, 883, 901, 1009, 1049 |
| SspMI | CTAG | 4 cut(s) | 167, 834, 1038, 1230 |
| SstI | GAGCTC | 1 cut(s) | 372 |
| StyD4I | CCNGG | 3 cut(s) | 849, 912, 988 |
| StyI | CCWWGG | 1 cut(s) | 279 |
| TaaI | ACNGT | 3 cut(s) | 77, 181, 700 |
| TaqI | TCGA | 7 cut(s) | 102, 146, 300, 322, 399, 506, 626 |
| TaqII | GACCGA | 1 cut(s) | 943 |
| TasI | AATT | 6 cut(s) | 466, 553, 883, 901, 1009, 1049 |
| TatI | WGTACW | 1 cut(s) | 1226 |
| TauI | GCSGC | 6 cut(s) | 131, 312, 440, 766, 801, 1071 |
| TfiI | GAWTC | 3 cut(s) | 781, 874, 1169 |
| Tru1I | TTAA | 3 cut(s) | 530, 1112, 1131 |
| Tru9I | TTAA | 3 cut(s) | 530, 1112, 1131 |
| TscAI | CASTG | 1 cut(s) | 184 |
| TseFI | GTSAC | 2 cut(s) | 1100, 1232 |
| TseI | GCWGC | 3 cut(s) | 97, 341, 688 |
| Tsp45I | GTSAC | 2 cut(s) | 1100, 1232 |
| TspDTI | ATGAA | 3 cut(s) | 994, 1022, 1230 |
| TspGWI | ACGGA | 3 cut(s) | 318, 402, 1218 |
| TspRI | CASTG | 1 cut(s) | 184 |
| Tth111I | GACNNNGTC | 1 cut(s) | 724 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 402 |
| VpaK11BI | GGWCC | 5 cut(s) | 184, 270, 283, 981, 1188 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 590 |
| XapI | RAATTY | 3 cut(s) | 883, 901, 1009 |
| XceI | RCATGY | 3 cut(s) | 514, 658, 1150 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 178, 920, 1181 |
| XhoI | CTCGAG | 1 cut(s) | 505 |
| XmiI | GTMKAC | 2 cut(s) | 300, 626 |
| XspI | CTAG | 4 cut(s) | 167, 834, 1038, 1230 |
| ZrmI | AGTACT | 1 cut(s) | 1228 |