Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003641

Physical Location & Seq

Genomic Coordinates Reverse (-)

49853141 .. 49856194

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0323300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGATCCAGACGCGGTGGCCAAGGCATTCGTGGAGCACTACTACTCGCTCTTCGATTCCAACCGCGCTGCCTTAGCCAATCTCTACCAGGAGGGCTCCATGTTGACCTTCGAGGGCCAGAAGATCCAAGGCTCACAGAACATCGTTGCCAAGCTCACCAGCCTCCCTTTCCAGCAGTGCCAGCACAGCATCACCACCGTCGATTGCCAGCCCTCTGGCCCCGCCGGCGGCATGCTCGTCTTCGTCAGCGGCAATCTCCAACTCGCCGGTGAACAGCACGCCCTCAAGTTCAGCCAGATGTTCCATCTGATGCCTACTCCACAAGGAAGCTTTTACGTTTTCAATGACATTTTCCGATTGAACTACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009889 GO:0009908 GO:0009962 GO:0009987 GO:0010033 GO:0010229 GO:0010252 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0031323 GO:0031326 GO:0031537 GO:0031540 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042592 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0140110 GO:1901360 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

123

Amino Acids

13.61

Weight (kDa)

5.67

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	6 - 120	2e-39	Nuclear transport factor 2 (NTF2) domain
NXF_NTF2	PF22602	7 - 37	3.5e-06	Nuclear RNA export factor, NTF2 domain
NXF_NTF2	PF22602	43 - 118	7e-06	Nuclear RNA export factor, NTF2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69690
fragaria_vesca	FvH4_4g31520 FvH4_5g15150
malus_domestica	MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1
prunus_persica	Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1
pyrus_communis	pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480
rosa_chinensis	RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021
rosa_laevigata	RLG00000005218 RLG00000006215
rosa_multiflora	Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272330 Rroxscaffold_5G00380970
rosa_rugosa	Rorug04G0323300 Rorug06G0438600
rosa_samantha	Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400
rosa_wichuraiana	Rw4G032020 Rw7G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	14, 66
AciI	CCGC	5 cut(s)	14, 64, 222, 228, 249
AclWI	GGATC	2 cut(s)	12, 118
AcoI	YGGCCR	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	343, 361
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	2 cut(s)	154, 330
AluI	AGCT	2 cut(s)	154, 330
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	12, 118
AoxI	GGCC	3 cut(s)	18, 115, 217
ApeKI	GCWGC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	115, 218
AsuHPI	GGTGA	3 cut(s)	148, 184, 281
BalI	TGGCCA	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	89
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	69, 229, 250
BlsI	GCNGC	3 cut(s)	70, 230, 251
Bme1390I	CCNGG	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	115, 218
BmiI	GGNNCC	3 cut(s)	6, 97, 220
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	198, 300
BpiI	GAAGAC	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	21, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	2 cut(s)	224, 266
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	21, 127
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	55
Bsh1236I	CGCG	2 cut(s)	14, 66
BshFI	GGCC	3 cut(s)	20, 117, 219
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	225, 267
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	20, 117, 219
Bsp1286I	GDGCHC	2 cut(s)	39, 98
Bsp143I	GATC	2 cut(s)	4, 123
BspACI	CCGC	5 cut(s)	14, 64, 222, 228, 249
BspANI	GGCC	3 cut(s)	20, 117, 219
BspFNI	CGCG	2 cut(s)	14, 66
BspLI	GGNNCC	3 cut(s)	6, 97, 220
BspPI	GGATC	2 cut(s)	12, 118
BspQI	GCTCTTC	1 cut(s)	56
BsrFI	RCCGGY	2 cut(s)	224, 266
BssAI	RCCGGY	2 cut(s)	224, 266
BssECI	CCNNGG	2 cut(s)	21, 127
BssMI	GATC	2 cut(s)	4, 123
BssT1I	CCWWGG	2 cut(s)	21, 127
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	5 cut(s)	182, 209, 226, 233, 279
BstDEI	CTNAG	1 cut(s)	73
BstFNI	CGCG	2 cut(s)	14, 66
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	7, 126
BstMBI	GATC	2 cut(s)	4, 123
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 181, 186, 225
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	87
BstUI	CGCG	2 cut(s)	14, 66
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	2 cut(s)	4, 123
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstYI	RGATCY	2 cut(s)	4, 123
BsuRI	GGCC	3 cut(s)	20, 117, 219
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	5 cut(s)	182, 209, 226, 233, 279
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	2 cut(s)	224, 266
Cfr13I	GGNCC	2 cut(s)	115, 218
CseI	GACGC	1 cut(s)	20
CviAII	CATG	3 cut(s)	100, 232, 369
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	2 cut(s)	6, 125
DpnII	GATC	2 cut(s)	4, 123
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	21, 127
Eco24I	GRGCYC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	21, 127
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	2 cut(s)	21, 127
FaeI	CATG	3 cut(s)	103, 235, 372
FaiI	YATR	3 cut(s)	101, 233, 370
FatI	CATG	3 cut(s)	99, 231, 368
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	69, 229, 250
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	69, 229, 250
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	69, 229, 250
HaeIII	GGCC	3 cut(s)	20, 117, 219
HapII	CCGG	2 cut(s)	225, 267
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	103, 235, 372
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	2 cut(s)	225, 267
HphI	GGTGA	3 cut(s)	148, 184, 281
Hpy166II	GTNNAC	2 cut(s)	105, 272
Hpy188I	TCNGA	2 cut(s)	309, 356
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	2 cut(s)	105, 272
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 181, 186, 225
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	103, 235, 372
HspAI	GCGC	1 cut(s)	66
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	4, 123
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	34, 101
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	2 cut(s)	198, 300
MaeII	ACGT	1 cut(s)	336
MalI	GATC	2 cut(s)	6, 125
MboI	GATC	2 cut(s)	4, 123
MboII	GAAGA	3 cut(s)	43, 133, 232
MflI	RGATCY	2 cut(s)	4, 123
MhlI	GDGCHC	2 cut(s)	39, 98
MlsI	TGGCCA	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	20
MmeI	TCCRAC	2 cut(s)	84, 283
MnlI	CCTC	5 cut(s)	85, 106, 173, 223, 293
Mox20I	TGGCCA	1 cut(s)	20
MreI	CGCCGGCG	1 cut(s)	224
MroNI	GCCGGC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	2 cut(s)	225, 267
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	2 cut(s)	14, 66
MwoI	GCNNNNNNNGC	4 cut(s)	74, 181, 186, 225
NaeI	GCCGGC	1 cut(s)	226
NdeII	GATC	2 cut(s)	4, 123
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	3 cut(s)	103, 235, 372
NlaIV	GGNNCC	3 cut(s)	6, 97, 220
NspI	RCATGY	1 cut(s)	235
PaeI	GCATGC	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	56
PctI	GAATGC	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	70, 230, 251
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	6, 97, 220
PspPI	GGNCC	2 cut(s)	115, 218
PsuI	RGATCY	2 cut(s)	4, 123
SapI	GCTCTTC	1 cut(s)	56
SatI	GCNGC	3 cut(s)	69, 229, 250
Sau3AI	GATC	2 cut(s)	4, 123
Sau96I	GGNCC	2 cut(s)	115, 218
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	39, 98
SetI	ASST	4 cut(s)	110, 156, 332, 339
SfaNI	GCATC	2 cut(s)	198, 300
SgrAI	CRCCGGYG	2 cut(s)	224, 266
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SphI	GCATGC	1 cut(s)	235
SsiI	CCGC	5 cut(s)	14, 64, 222, 228, 249
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	2 cut(s)	21, 127
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	54, 111, 201
TauI	GCSGC	2 cut(s)	231, 252
TfiI	GAWTC	1 cut(s)	56
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	1 cut(s)	68
TspRI	CASTG	1 cut(s)	182
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.