Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003641

Physical Location & Seq

Genomic Coordinates Forward (+)

59860416 .. 59863019

Gene Structure 2604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG380900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGATCATGGAAGGTGATGAAAATGGGATCCGCATCCGGCCCAATTTTCCATTACAGTTTCTCGACAAGAGAAAGGAGGAAGAAGCAGCTGCCTCCTCCTCCAGCTACGGTGGCGCTGAGCCTGCAGGTTCTTCCAAGGCCGTAGTCGTTGCCCGATCCACTTCCGATGTATCCAGCATTCAAGAAAAGAAGCCTGCTCCTCCCAAAAGGACGTCAACGAAAGACAGGCACACCAAAGTGGACGGTCGTGGCCGCCGGATCCGCATGCCTGCCACGTGCGCCGCTAGGGTTTTTCAGCTGACTAGAGAGCTAGGGCACAAGTCGGATGGGGAGACCATCGAGTGGCTGCTCCAGCAGGCCGAACCGGCCGTCATCGCAGCCACCGGGACCGGCACTATTCCCGCCAACTTCACATCCCTCAACATCTCGCTGAGGAGCTCCGGCTCGAGCATGTCGGCGCCGTCGCACTTGAGGACCAGCGGCTACTTCAACCCGACCAACAGCAGTAGCAACCTGTTGTTCGGCGGCGGCGCATCGCAGTTGATGGAGGAGCAGCAGCGCGGCAGGGTCTTGTTTCCGGGGGTTGATTTGTCTCCGTCTTCAATGTTGTTGAATTTCAACTCCGGAAATGTGAATGCCATGTTGGAAGCCAAGCAAGAAATGCGCGATCAAGGTAATAATAATACTAGTGCTACTACTACTCTTGATCTTGATCATATGTCCAGAGAGGGGAGTAGTATAGGAAGAAAGAGAAGGCCTGACGAGCAAGATTTGTTATCGTCATCATCGTCCCATACTAGTCATAGTCAATTGGGGAATTACATGTTGCAATCGAGCACGGGGTCGATTCCGGCAAGCCAGAGTACGATTCCGGCGACATTTTGGATGGTGGCGAACAATCCTTCTAGTAACAACAGCAATCAAGGCCAGGCTGGGAATATGAGTGGTGGTGGTGGTGGCGGTGCTCATCTTCATCATCAAGACCCACCTATGTGGACATTTCCCACTACTGTCAACGGTAACCATGGGCTGCATTTCATGAATTTTGCTCCTCCAATGGCAATATTACCAAGTCAAGTGCAATTGGGGACCTCGGTATTGAGCACTGGTGGAGGCGGCGGAGGAGGCGCAATGGCGGACAGCCACTTGGGTATGCTGGCGGCGCTCAACGCGTATAGGCCAATTCTCAGCGGTGGCGCTCCGGTGAATGGGCAGCATCCATCAGACGATGCAGATGAGGGACAACATGATGAGCATTCAAATGCTAGTCAACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009889 GO:0009908 GO:0009962 GO:0009987 GO:0010033 GO:0010229 GO:0010252 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0031323 GO:0031326 GO:0031537 GO:0031540 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042592 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0140110 GO:1901360 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

425

Amino Acids

44.86

Weight (kDa)

6.57

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	71 - 232	1.3e-34	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69690
fragaria_vesca	FvH4_4g31520 FvH4_5g15150
malus_domestica	MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1
prunus_persica	Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1
pyrus_communis	pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480
rosa_chinensis	RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021
rosa_laevigata	RLG00000005218 RLG00000006215
rosa_multiflora	Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272330 Rroxscaffold_5G00380970
rosa_rugosa	Rorug04G0323300 Rorug06G0438600
rosa_samantha	Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400
rosa_wichuraiana	Rw4G032020 Rw7G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	457
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccII	CGCG	3 cut(s)	561, 666, 1172
AccIII	TCCGGA	1 cut(s)	623
AclI	AACGTT	1 cut(s)	1273
AclWI	GGATC	5 cut(s)	22, 35, 150, 253, 266
AcoI	YGGCCR	2 cut(s)	250, 366
AcsI	RAATTY	2 cut(s)	613, 1042
AcvI	CACGTG	1 cut(s)	276
AcyI	GRCGYC	2 cut(s)	212, 458
AfaI	GTAC	1 cut(s)	865
AfiI	CCNNNNNNNGG	3 cut(s)	342, 729, 1208
AflIII	ACRYGT	2 cut(s)	822, 1170
AgsI	TTSAA	6 cut(s)	182, 490, 603, 613, 619, 1260
AhlI	ACTAGT	2 cut(s)	686, 797
AjnI	CCWGG	1 cut(s)	927
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AleI	CACNNNNGTG	2 cut(s)	236, 991
AluBI	AGCT	5 cut(s)	89, 105, 298, 310, 438
AluI	AGCT	5 cut(s)	89, 105, 298, 310, 438
Alw21I	GWGCWC	4 cut(s)	440, 839, 967, 1106
Alw26I	GTCTC	2 cut(s)	326, 597
AlwI	GGATC	5 cut(s)	22, 35, 150, 253, 266
Ama87I	CYCGRG	1 cut(s)	445
Aor13HI	TCCGGA	1 cut(s)	623
AoxI	GGCC	8 cut(s)	38, 138, 250, 357, 366, 755, 925, 1178
ApeKI	GCWGC	8 cut(s)	86, 89, 346, 377, 553, 556, 1030, 1213
ApoI	RAATTY	2 cut(s)	613, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AspLEI	GCGC	9 cut(s)	116, 281, 460, 533, 561, 666, 1130, 1165, 1199
AspS9I	GGNCC	4 cut(s)	39, 387, 474, 1089
AsuC2I	CCSGG	2 cut(s)	385, 579
AsuHPI	GGTGA	2 cut(s)	26, 1216
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	3 cut(s)	387, 474, 1089
BaeGI	GKGCMC	1 cut(s)	318
BamHI	GGATCC	2 cut(s)	27, 258
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	440
BbrPI	CACGTG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	4 cut(s)	440, 839, 967, 1106
BbvCI	CCTCAGC	1 cut(s)	431
BbvI	GCAGC	8 cut(s)	76, 98, 333, 389, 565, 568, 1017, 1225
BccI	CCATC	5 cut(s)	320, 344, 538, 880, 1228
BceAI	ACGGC	3 cut(s)	125, 353, 445
BciT130I	CCWGG	1 cut(s)	929
BciVI	GTATCC	1 cut(s)	181
BclI	TGATCA	2 cut(s)	3, 712
BcnI	CCSGG	2 cut(s)	385, 579
BcoDI	GTCTC	2 cut(s)	326, 597
BcuI	ACTAGT	2 cut(s)	686, 797
BfaI	CTAG	7 cut(s)	285, 303, 311, 687, 798, 906, 1266
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	4 cut(s)	117, 461, 1166, 1200
BfuAI	ACCTGC	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	365
BlpI	GCTNAGC	1 cut(s)	117
Bme1390I	CCNGG	3 cut(s)	385, 579, 929
Bme18I	GGWCC	3 cut(s)	387, 474, 1089
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	4 cut(s)	39, 387, 474, 1089
BmiI	GGNNCC	5 cut(s)	29, 260, 388, 459, 1090
BmrFI	CCNGG	3 cut(s)	385, 579, 929
BmsI	GCATC	4 cut(s)	42, 542, 1219, 1225
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	2 cut(s)	85, 335
Bpu10I	CCTNAGC	1 cut(s)	431
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	2 cut(s)	385, 579
BsaAI	YACGTR	1 cut(s)	276
BsaBI	GATNNNNATC	2 cut(s)	32, 711
BsaHI	GRCGYC	2 cut(s)	212, 458
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	4 cut(s)	135, 578, 1024, 1092
BsaWI	WCCGGW	2 cut(s)	623, 1201
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 729, 1208
Bse118I	RCCGGY	2 cut(s)	364, 389
Bse1I	ACTGG	1 cut(s)	1111
Bse3DI	GCAATG	1 cut(s)	1137
Bse8I	GATNNNNATC	2 cut(s)	32, 711
BseAI	TCCGGA	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	929
BseDI	CCNNGG	4 cut(s)	135, 578, 1024, 1092
BseGI	GGATG	5 cut(s)	33, 331, 413, 891, 1216
BseJI	GATNNNNATC	2 cut(s)	32, 711
BseLI	CCNNNNNNNGG	3 cut(s)	342, 729, 1208
BseMI	GCAATG	1 cut(s)	1137
BseMII	CTCAG	3 cut(s)	108, 422, 1201
BseNI	ACTGG	1 cut(s)	1111
BseRI	GAGGAG	7 cut(s)	85, 88, 189, 448, 563, 1041, 1137
BseSI	GKGCMC	1 cut(s)	318
BseX3I	CGGCCG	1 cut(s)	366
BseXI	GCAGC	8 cut(s)	76, 98, 333, 389, 565, 568, 1017, 1225
BseYI	CCCAGC	1 cut(s)	932
Bsh1236I	CGCG	3 cut(s)	561, 666, 1172
Bsh1285I	CGRYCG	2 cut(s)	247, 369
BshFI	GGCC	8 cut(s)	40, 140, 252, 359, 368, 757, 927, 1180
BshNI	GGYRCC	1 cut(s)	457
BsiEI	CGRYCG	2 cut(s)	247, 369
BsiHKAI	GWGCWC	4 cut(s)	440, 839, 967, 1106
BsiHKCI	CYCGRG	1 cut(s)	445
BslFI	GGGAC	4 cut(s)	400, 775, 1102, 1254
BslI	CCNNNNNNNGG	3 cut(s)	342, 729, 1208
BsmAI	GTCTC	2 cut(s)	326, 597
BsmFI	GGGAC	4 cut(s)	400, 775, 1102, 1254
BsmI	GAATGC	3 cut(s)	177, 640, 1255
BsnI	GGCC	8 cut(s)	40, 140, 252, 359, 368, 757, 927, 1180
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	445
Bsp1286I	GDGCHC	5 cut(s)	318, 440, 839, 967, 1106
Bsp13I	TCCGGA	1 cut(s)	623
Bsp143I	GATC	7 cut(s)	3, 27, 155, 258, 667, 706, 712
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	1024
BspANI	GGCC	8 cut(s)	40, 140, 252, 359, 368, 757, 927, 1180
BspCNI	CTCAG	3 cut(s)	109, 423, 1200
BspEI	TCCGGA	1 cut(s)	623
BspFNI	CGCG	3 cut(s)	561, 666, 1172
BspHI	TCATGA	1 cut(s)	1038
BspLI	GGNNCC	5 cut(s)	29, 260, 388, 459, 1090
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	5 cut(s)	22, 35, 150, 253, 266
BspT107I	GGYRCC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	1137
BsrFI	RCCGGY	2 cut(s)	364, 389
BsrI	ACTGG	1 cut(s)	1111
BssAI	RCCGGY	2 cut(s)	364, 389
BssECI	CCNNGG	4 cut(s)	135, 578, 1024, 1092
BssMI	GATC	7 cut(s)	3, 27, 155, 258, 667, 706, 712
BssNI	GRCGYC	2 cut(s)	212, 458
BssT1I	CCWWGG	2 cut(s)	135, 1024
Bst2UI	CCWGG	1 cut(s)	929
Bst4CI	ACNGT	5 cut(s)	57, 110, 245, 1012, 1019
BstACI	GRCGYC	2 cut(s)	212, 458
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstBAI	YACGTR	1 cut(s)	276
BstC8I	GCNNGC	7 cut(s)	123, 195, 266, 270, 357, 856, 1158
BstDEI	CTNAG	3 cut(s)	117, 431, 1187
BstDSI	CCRYGG	1 cut(s)	1024
BstEII	GGTNACC	1 cut(s)	1019
BstF5I	GGATG	5 cut(s)	33, 331, 413, 891, 1216
BstFNI	CGCG	3 cut(s)	561, 666, 1172
BstH2I	RGCGCY	4 cut(s)	117, 461, 1166, 1200
BstHHI	GCGC	9 cut(s)	116, 281, 460, 533, 561, 666, 1130, 1165, 1199
BstKTI	GATC	7 cut(s)	6, 30, 158, 261, 670, 709, 715
BstMAI	GTCTC	2 cut(s)	326, 597
BstMBI	GATC	7 cut(s)	3, 27, 155, 258, 667, 706, 712
BstMCI	CGRYCG	2 cut(s)	247, 369
BstNI	CCWGG	1 cut(s)	929
BstNSI	RCATGY	3 cut(s)	268, 454, 826
BstPI	GGTNACC	1 cut(s)	1019
BstSCI	CCNGG	3 cut(s)	383, 577, 927
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	318
BstUI	CGCG	3 cut(s)	561, 666, 1172
BstV1I	GCAGC	8 cut(s)	76, 98, 333, 389, 565, 568, 1017, 1225
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	2 cut(s)	27, 258
BstXI	CCANNNNNNTGG	1 cut(s)	993
BstYI	RGATCY	2 cut(s)	27, 258
BstZI	CGGCCG	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	8 cut(s)	40, 140, 252, 359, 368, 757, 927, 1180
BtgI	CCRYGG	1 cut(s)	1024
BtgZI	GCGATG	2 cut(s)	358, 519
BtsCI	GGATG	5 cut(s)	33, 331, 413, 891, 1216
BtsIMutI	CAGTG	1 cut(s)	1104
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	7 cut(s)	123, 195, 266, 270, 357, 856, 1158
CciI	TCATGA	1 cut(s)	1038
CfoI	GCGC	9 cut(s)	116, 281, 460, 533, 561, 666, 1130, 1165, 1199
Cfr10I	RCCGGY	2 cut(s)	364, 389
Cfr13I	GGNCC	4 cut(s)	39, 387, 474, 1089
Csp6I	GTAC	1 cut(s)	864
CviAII	CATG	8 cut(s)	7, 265, 451, 640, 823, 1025, 1039, 1247
CviQI	GTAC	1 cut(s)	864
DdeI	CTNAG	3 cut(s)	117, 431, 1187
DinI	GGCGCC	1 cut(s)	459
DpnI	GATC	7 cut(s)	5, 29, 157, 260, 669, 708, 714
DpnII	GATC	7 cut(s)	3, 27, 155, 258, 667, 706, 712
EaeI	YGGCCR	2 cut(s)	250, 366
EagI	CGGCCG	1 cut(s)	366
EciI	GGCGGA	2 cut(s)	1134, 1151
Ecl136II	GAGCTC	1 cut(s)	438
EclXI	CGGCCG	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	135, 1024
Eco147I	AGGCCT	1 cut(s)	757
Eco24I	GRGCYC	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	3 cut(s)	387, 474, 1089
Eco52I	CGGCCG	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	438
Eco72I	CACGTG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	445
Eco91I	GGTNACC	1 cut(s)	1019
EcoICRI	GAGCTC	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	1089
EcoO65I	GGTNACC	1 cut(s)	1019
EcoRII	CCWGG	1 cut(s)	927
EcoT14I	CCWWGG	2 cut(s)	135, 1024
EcoT38I	GRGCYC	1 cut(s)	440
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
ErhI	CCWWGG	2 cut(s)	135, 1024
FaeI	CATG	8 cut(s)	10, 268, 454, 643, 826, 1028, 1042, 1250
FaqI	GGGAC	4 cut(s)	400, 775, 1102, 1254
FatI	CATG	8 cut(s)	6, 264, 450, 639, 822, 1024, 1038, 1246
FauI	CCCGC	1 cut(s)	409
FauNDI	CATATG	1 cut(s)	717
FbaI	TGATCA	2 cut(s)	3, 712
FokI	GGATG	5 cut(s)	20, 338, 400, 898, 1203
FriOI	GRGCYC	1 cut(s)	440
FspBI	CTAG	7 cut(s)	285, 303, 311, 687, 798, 906, 1266
GlaI	GCGC	9 cut(s)	115, 280, 459, 532, 560, 665, 1129, 1164, 1198
GsaI	CCCAGC	1 cut(s)	936
GsuI	CTGGAG	2 cut(s)	85, 335
HaeII	RGCGCY	4 cut(s)	117, 461, 1166, 1200
HaeIII	GGCC	8 cut(s)	40, 140, 252, 359, 368, 757, 927, 1180
HhaI	GCGC	9 cut(s)	116, 281, 460, 533, 561, 666, 1130, 1165, 1199
Hin1I	GRCGYC	2 cut(s)	212, 458
Hin1II	CATG	8 cut(s)	10, 268, 454, 643, 826, 1028, 1042, 1250
Hin6I	GCGC	9 cut(s)	114, 279, 458, 531, 559, 664, 1128, 1163, 1197
HinP1I	GCGC	9 cut(s)	114, 279, 458, 531, 559, 664, 1128, 1163, 1197
HincII	GTYRAC	3 cut(s)	216, 1015, 1271
HindII	GTYRAC	3 cut(s)	216, 1015, 1271
HinfI	GANTC	2 cut(s)	847, 868
HphI	GGTGA	2 cut(s)	26, 1216
Hpy166II	GTNNAC	5 cut(s)	216, 241, 996, 1015, 1271
Hpy188I	TCNGA	3 cut(s)	166, 325, 1225
Hpy188III	TCNNGA	8 cut(s)	62, 182, 624, 704, 710, 723, 980, 1039
Hpy8I	GTNNAC	5 cut(s)	216, 241, 996, 1015, 1271
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	3 cut(s)	5, 747, 912
HpyCH4III	ACNGT	5 cut(s)	57, 110, 245, 1012, 1019
HpyCH4IV	ACGT	3 cut(s)	212, 275, 1273
HpyCH4V	TGCA	5 cut(s)	125, 829, 1033, 1081, 1232
HpyF3I	CTNAG	3 cut(s)	117, 431, 1187
HpySE526I	ACGT	3 cut(s)	212, 275, 1273
Hsp92I	GRCGYC	2 cut(s)	212, 458
Hsp92II	CATG	8 cut(s)	10, 268, 454, 643, 826, 1028, 1042, 1250
HspAI	GCGC	9 cut(s)	114, 279, 458, 531, 559, 664, 1128, 1163, 1197
KasI	GGCGCC	1 cut(s)	457
Kpn2I	TCCGGA	1 cut(s)	623
Ksp22I	TGATCA	2 cut(s)	3, 712
Kzo9I	GATC	7 cut(s)	3, 27, 155, 258, 667, 706, 712
LmnI	GCTCC	7 cut(s)	202, 354, 435, 443, 550, 1054, 1204
Lsp1109I	GCAGC	8 cut(s)	76, 98, 333, 389, 565, 568, 1017, 1225
LweI	GCATC	4 cut(s)	42, 542, 1219, 1225
MaeI	CTAG	7 cut(s)	285, 303, 311, 687, 798, 906, 1266
MaeII	ACGT	3 cut(s)	212, 275, 1273
MaeIII	GTNAC	2 cut(s)	908, 1019
MalI	GATC	7 cut(s)	5, 29, 157, 260, 669, 708, 714
MboI	GATC	7 cut(s)	3, 27, 155, 258, 667, 706, 712
MboII	GAAGA	5 cut(s)	92, 123, 591, 756, 962
MfeI	CAATTG	2 cut(s)	809, 1082
MflI	RGATCY	2 cut(s)	27, 258
MhlI	GDGCHC	5 cut(s)	318, 440, 839, 967, 1106
MluCI	AATT	7 cut(s)	43, 613, 809, 817, 1042, 1082, 1182
MluI	ACGCGT	1 cut(s)	1170
Mly113I	GGCGCC	1 cut(s)	458
MmeI	TCCRAC	2 cut(s)	303, 624
MroI	TCCGGA	1 cut(s)	623
MseI	TTAA	1 cut(s)	1276
MslI	CAYNNNNRTG	3 cut(s)	236, 991, 1260
MspA1I	CMGCKG	4 cut(s)	89, 298, 480, 1191
MspR9I	CCNGG	3 cut(s)	385, 579, 929
MunI	CAATTG	2 cut(s)	809, 1082
Mva1269I	GAATGC	3 cut(s)	177, 640, 1255
MvaI	CCWGG	1 cut(s)	929
MvnI	CGCG	3 cut(s)	561, 666, 1172
NarI	GGCGCC	1 cut(s)	458
NciI	CCSGG	2 cut(s)	385, 579
NcoI	CCATGG	1 cut(s)	1024
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	7 cut(s)	3, 27, 155, 258, 667, 706, 712
NlaIII	CATG	8 cut(s)	10, 268, 454, 643, 826, 1028, 1042, 1250
NlaIV	GGNNCC	5 cut(s)	29, 260, 388, 459, 1090
NspI	RCATGY	3 cut(s)	268, 454, 826
OliI	CACNNNNGTG	2 cut(s)	236, 991
PaeI	GCATGC	1 cut(s)	268
PaeR7I	CTCGAG	1 cut(s)	445
PagI	TCATGA	1 cut(s)	1038
PceI	AGGCCT	1 cut(s)	757
PciI	ACATGT	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	2 cut(s)	785, 872
PctI	GAATGC	3 cut(s)	177, 640, 1255
PfeI	GAWTC	2 cut(s)	847, 868
PflMI	CCANNNNNTGG	1 cut(s)	342
PluTI	GGCGCC	1 cut(s)	461
PmaCI	CACGTG	1 cut(s)	276
PmlI	CACGTG	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	1089
PscI	ACATGT	1 cut(s)	822
Psp124BI	GAGCTC	1 cut(s)	440
Psp1406I	AACGTT	1 cut(s)	1273
Psp5II	RGGWCCY	1 cut(s)	1089
Psp6I	CCWGG	1 cut(s)	927
PspCI	CACGTG	1 cut(s)	276
PspEI	GGTNACC	1 cut(s)	1019
PspFI	CCCAGC	1 cut(s)	932
PspGI	CCWGG	1 cut(s)	927
PspN4I	GGNNCC	5 cut(s)	29, 260, 388, 459, 1090
PspPI	GGNCC	4 cut(s)	39, 387, 474, 1089
PspPPI	RGGWCCY	1 cut(s)	1089
PspXI	VCTCGAGB	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	27, 258
PvuII	CAGCTG	2 cut(s)	89, 298
RsaI	GTAC	1 cut(s)	865
RsaNI	GTAC	1 cut(s)	864
RseI	CAYNNNNRTG	3 cut(s)	236, 991, 1260
SacI	GAGCTC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	1276
Sau3AI	GATC	7 cut(s)	3, 27, 155, 258, 667, 706, 712
Sau96I	GGNCC	4 cut(s)	39, 387, 474, 1089
SbfI	CCTGCAGG	1 cut(s)	127
ScrFI	CCNGG	3 cut(s)	385, 579, 929
SdaI	CCTGCAGG	1 cut(s)	127
SduI	GDGCHC	5 cut(s)	318, 440, 839, 967, 1106
SfaNI	GCATC	4 cut(s)	42, 542, 1219, 1225
SfcI	CTRYAG	1 cut(s)	123
SfiI	GGCCNNNNNGGCC	1 cut(s)	365
SfoI	GGCGCC	1 cut(s)	459
Sfr274I	CTCGAG	1 cut(s)	445
SinI	GGWCC	3 cut(s)	387, 474, 1089
SlaI	CTCGAG	1 cut(s)	445
SmiMI	CAYNNNNRTG	3 cut(s)	236, 991, 1260
SmlI	CTYRAG	2 cut(s)	445, 469
SmoI	CTYRAG	2 cut(s)	445, 469
SpeI	ACTAGT	2 cut(s)	686, 797
SphI	GCATGC	1 cut(s)	268
Sse8387I	CCTGCAGG	1 cut(s)	127
Sse9I	AATT	7 cut(s)	43, 613, 809, 817, 1042, 1082, 1182
SseBI	AGGCCT	1 cut(s)	757
SspDI	GGCGCC	1 cut(s)	457
SspI	AATATT	1 cut(s)	1065
SspMI	CTAG	7 cut(s)	285, 303, 311, 687, 798, 906, 1266
SstI	GAGCTC	1 cut(s)	440
StuI	AGGCCT	1 cut(s)	757
StyD4I	CCNGG	3 cut(s)	383, 577, 927
StyI	CCWWGG	2 cut(s)	135, 1024
TaaI	ACNGT	5 cut(s)	57, 110, 245, 1012, 1019
TaiI	ACGT	3 cut(s)	215, 278, 1276
TaqI	TCGA	5 cut(s)	63, 339, 446, 833, 845
TasI	AATT	7 cut(s)	43, 613, 809, 817, 1042, 1082, 1182
TauI	GCSGC	8 cut(s)	255, 284, 483, 528, 531, 564, 1119, 1163
TfiI	GAWTC	2 cut(s)	847, 868
Tru1I	TTAA	1 cut(s)	1276
Tru9I	TTAA	1 cut(s)	1276
TscAI	CASTG	1 cut(s)	1111
TseI	GCWGC	8 cut(s)	86, 89, 346, 377, 553, 556, 1030, 1213
TspDTI	ATGAA	4 cut(s)	33, 962, 1027, 1055
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	1 cut(s)	1111
Van91I	CCANNNNNTGG	1 cut(s)	342
VpaK11BI	GGWCC	3 cut(s)	387, 474, 1089
XapI	RAATTY	2 cut(s)	613, 1042
XceI	RCATGY	3 cut(s)	268, 454, 826
XhoI	CTCGAG	1 cut(s)	445
XspI	CTAG	7 cut(s)	285, 303, 311, 687, 798, 906, 1266
ZraI	GACGTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.