Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003641

Physical Location & Seq

Genomic Coordinates Forward (+)

65953512 .. 65954795

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005218

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGAAGGCGGCGATGATCATTTCCACCACCACCACCACCACTACCAACAACAACAGCAGCAGCAGCAGCATCACCACCGCCCCAACTTCCCATTCCAACTCCTCGATCAGAAGAAAGAAGACGAAGCCGCCTCCTGCTCCAACAACTCCGCCGCCGCCAGCGCTTATCCTTCTCTAGCTATCTCCTCCGCGGTAGATCCGATCAACCCAATAAACACCAACGCCACCGCATCGACAGCAGTCACCACCGCCGTCGCTGCCGAGCCCTCCAAGAAGCCGCCGCCCAAGCGGACCTCCACTAAAGACCGCCACACCAAAGTCGACGGCCGCGGGCGCCGCATTCGAATGCCGGCGCTCTGCGCGGCCAGGGTGTTTCAGCTCACTCGCGAGCTGGGACACAAGTCCGACGGCGAAACGATCGAGTGGCTCCTCCAGCAGGCCGAACCGGCCGTGATCGCAGCCACCGGAACCGGCACGATCCCAGCTAACTTCACTTCTCTAAACATCTCGCTACGAAGCTCCGGTTCAAGCATGTCGGTGCCGTCGCAGCTCAGATCTTCTTATTACAGCCCCAATTTCTCGTCGTCCATACACCAGAGTAGTCAGAACCAGCGGCGGAATCTGTTTCAGGGTTTGGGGCTTTCCTCCTCGGACAGCTCGTCGACGCTGCTCAATTTCCAGACCAACACCATGCACTCTATGCTTCAGGCCAAGCAGGAACTACGTGATACGGTGTCGTTGGACTTATCCGAGGCGGCGTCAGCGGCGGAGGGAAGCATGGGAAGGAAGAGAAGGCCAGCCGAACAGGACTTGAATCAAATGGGAAGTGGGTATTTACTGCAGTCCAGCTCCGGAGCAATCCCGGCGAGCCACCACAGCCAGATTCCGGCGAATTTTTGGATGCTGGCTAATTCCAATAATCCAGCAGTGATGAGCGGAGACCCAATTTGGACATTTCCTTCGGTCAATAACAGTGGGTTGTACAGAGGCACCATGTCAGGCGGCTTGCATTTCATGAACTTCCCTACCCCGGTAGCGCTGATGCCAAGTCAGCAGCAGATGGGCGGCTCCGGCGGCGGTGGAGGCGGAGATAACGGCGGAAATGACGGTAGTGGTGGCGGAGATCATCACAACATGAGCGACGGGCAGCTGAACATGCTGGCCGGGCTCAATCCGTACCGGCACATGTCCTCGGAGTCACCGCAGCAGCAGGCCAGTGGGTCCCACTCGCATCACGGCGGCGGCGGCGACGACCGGCACGATAGTACTAGTCACCACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009739 GO:0009791 GO:0009889 GO:0010029 GO:0010033 GO:0010229 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031347 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0090567 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

428

Amino Acids

45.66

Weight (kDa)

6.81

Isoelectric Point (pI)

65.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	98 - 233	8.7e-35	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69690
fragaria_vesca	FvH4_4g31520 FvH4_5g15150
malus_domestica	MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1
prunus_persica	Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1
pyrus_communis	pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480
rosa_chinensis	RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021
rosa_laevigata	RLG00000005218 RLG00000006215
rosa_multiflora	Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272330 Rroxscaffold_5G00380970
rosa_rugosa	Rorug04G0323300 Rorug06G0438600
rosa_samantha	Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400
rosa_wichuraiana	Rw4G032020 Rw7G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	333, 538, 989
AccBSI	CCGCTC	1 cut(s)	936
AccI	GTMKAC	2 cut(s)	321, 662
AccII	CGCG	4 cut(s)	191, 330, 362, 387
AccIII	TCCGGA	1 cut(s)	851
AclWI	GGATC	2 cut(s)	191, 472
AcoI	YGGCCR	4 cut(s)	325, 363, 447, 1161
AcsI	RAATTY	1 cut(s)	892
AcuI	CTGAAG	1 cut(s)	689
AcyI	GRCGYC	2 cut(s)	334, 758
AfaI	GTAC	3 cut(s)	983, 1178, 1267
AfeI	AGCGCT	2 cut(s)	163, 1038
AfiI	CCNNNNNNNGG	3 cut(s)	436, 886, 1030
AflIII	ACRYGT	1 cut(s)	1185
AgsI	TTSAA	2 cut(s)	528, 814
AhdI	GACNNNNNGTC	1 cut(s)	658
AhlI	ACTAGT	1 cut(s)	1268
AjnI	CCWGG	1 cut(s)	365
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	9 cut(s)	179, 379, 391, 485, 519, 550, 657, 849, 1150
AluI	AGCT	9 cut(s)	179, 379, 391, 485, 519, 550, 657, 849, 1150
Alw26I	GTCTC	1 cut(s)	933
AlwI	GGATC	2 cut(s)	191, 472
Aor13HI	TCCGGA	1 cut(s)	851
Aor51HI	AGCGCT	2 cut(s)	163, 1038
AoxI	GGCC	8 cut(s)	325, 363, 438, 447, 708, 794, 1161, 1212
ApoI	RAATTY	1 cut(s)	892
ArsI	GACNNNNNNTTYG	2 cut(s)	943, 975
AspLEI	GCGC	5 cut(s)	164, 336, 355, 362, 1039
AspS9I	GGNCC	2 cut(s)	291, 1221
AsuC2I	CCSGG	3 cut(s)	863, 1031, 1165
AsuHPI	GGTGA	4 cut(s)	65, 235, 1191, 1265
AsuII	TTCGAA	1 cut(s)	343
AvaII	GGWCC	2 cut(s)	291, 1221
BanI	GGYRCC	3 cut(s)	333, 538, 989
BanII	GRGCYC	2 cut(s)	267, 1170
BbsI	GAAGAC	1 cut(s)	126
BccI	CCATC	1 cut(s)	1054
BceAI	ACGGC	7 cut(s)	236, 340, 424, 434, 526, 1111, 1252
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	3 cut(s)	863, 1031, 1165
BcoDI	GTCTC	1 cut(s)	933
BcuI	ACTAGT	1 cut(s)	1268
BfaI	CTAG	2 cut(s)	176, 1269
BfmI	CTRYAG	1 cut(s)	839
BfoI	RGCGCY	4 cut(s)	165, 337, 356, 1040
BglI	GCCNNNNNGGC	1 cut(s)	446
BglII	AGATCT	1 cut(s)	554
BmcAI	AGTACT	1 cut(s)	1267
Bme1390I	CCNGG	4 cut(s)	367, 863, 1031, 1165
Bme18I	GGWCC	2 cut(s)	291, 1221
BmeRI	GACNNNNNGTC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	291, 1221
BmiI	GGNNCC	8 cut(s)	335, 428, 469, 540, 991, 1069, 1222, 1223
BmrFI	CCNGG	4 cut(s)	367, 863, 1031, 1165
BmsI	GCATC	5 cut(s)	79, 239, 891, 1032, 1240
BoxI	GACNNNNGTC	2 cut(s)	239, 400
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	416
Bpu14I	TTCGAA	1 cut(s)	343
BpuMI	CCSGG	3 cut(s)	863, 1031, 1165
BsaAI	YACGTR	1 cut(s)	725
BsaHI	GRCGYC	2 cut(s)	334, 758
BsaI	GGTCTC	1 cut(s)	933
BsaJI	CCNNGG	7 cut(s)	189, 328, 366, 648, 750, 1029, 1191
BsaWI	WCCGGW	3 cut(s)	464, 521, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	436, 886, 1030
Bse118I	RCCGGY	5 cut(s)	349, 445, 470, 1179, 1254
Bse1I	ACTGG	1 cut(s)	1215
BseAI	TCCGGA	1 cut(s)	851
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	7 cut(s)	189, 328, 366, 648, 750, 1029, 1191
BseGI	GGATG	1 cut(s)	906
BseLI	CCNNNNNNNGG	3 cut(s)	436, 886, 1030
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	1 cut(s)	1215
BseRI	GAGGAG	4 cut(s)	92, 175, 419, 637
BseX3I	CGGCCG	2 cut(s)	325, 447
BseYI	CCCAGC	2 cut(s)	391, 481
Bsh1236I	CGCG	4 cut(s)	191, 330, 362, 387
Bsh1285I	CGRYCG	4 cut(s)	328, 420, 450, 1255
BshFI	GGCC	8 cut(s)	327, 365, 440, 449, 710, 796, 1163, 1214
BshNI	GGYRCC	3 cut(s)	333, 538, 989
BsiEI	CGRYCG	4 cut(s)	328, 420, 450, 1255
BslFI	GGGAC	2 cut(s)	408, 1207
BslI	CCNNNNNNNGG	3 cut(s)	436, 886, 1030
BsmAI	GTCTC	1 cut(s)	933
BsmFI	GGGAC	2 cut(s)	408, 1207
BsmI	GAATGC	2 cut(s)	339, 351
BsnI	GGCC	8 cut(s)	327, 365, 440, 449, 710, 796, 1163, 1214
Bso31I	GGTCTC	1 cut(s)	933
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	267, 1170
Bsp13I	TCCGGA	1 cut(s)	851
Bsp1407I	TGTACA	1 cut(s)	981
Bsp143I	GATC	9 cut(s)	16, 106, 196, 201, 417, 453, 477, 554, 1123
Bsp68I	TCGCGA	1 cut(s)	387
BspANI	GGCC	8 cut(s)	327, 365, 440, 449, 710, 796, 1163, 1214
BspCNI	CTCAG	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	851
BspFNI	CGCG	4 cut(s)	191, 330, 362, 387
BspHI	TCATGA	1 cut(s)	1014
BspLI	GGNNCC	8 cut(s)	335, 428, 469, 540, 991, 1069, 1222, 1223
BspMAI	CTGCAG	1 cut(s)	843
BspPI	GGATC	2 cut(s)	191, 472
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	3 cut(s)	333, 538, 989
BspTNI	GGTCTC	1 cut(s)	933
BsrBI	CCGCTC	1 cut(s)	936
BsrFI	RCCGGY	5 cut(s)	349, 445, 470, 1179, 1254
BsrGI	TGTACA	1 cut(s)	981
BsrI	ACTGG	1 cut(s)	1215
BssAI	RCCGGY	5 cut(s)	349, 445, 470, 1179, 1254
BssECI	CCNNGG	7 cut(s)	189, 328, 366, 648, 750, 1029, 1191
BssMI	GATC	9 cut(s)	16, 106, 196, 201, 417, 453, 477, 554, 1123
BssNI	GRCGYC	2 cut(s)	334, 758
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	3 cut(s)	733, 974, 1109
Bst6I	CTCTTC	1 cut(s)	782
BstACI	GRCGYC	2 cut(s)	334, 758
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstAUI	TGTACA	1 cut(s)	981
BstBAI	YACGTR	1 cut(s)	725
BstBI	TTCGAA	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	551
BstDSI	CCRYGG	2 cut(s)	189, 328
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	906
BstFNI	CGCG	4 cut(s)	191, 330, 362, 387
BstH2I	RGCGCY	4 cut(s)	165, 337, 356, 1040
BstHHI	GCGC	5 cut(s)	164, 336, 355, 362, 1039
BstKTI	GATC	9 cut(s)	19, 109, 199, 204, 420, 456, 480, 557, 1126
BstMAI	GTCTC	1 cut(s)	933
BstMBI	GATC	9 cut(s)	16, 106, 196, 201, 417, 453, 477, 554, 1123
BstMCI	CGRYCG	4 cut(s)	328, 420, 450, 1255
BstNI	CCWGG	1 cut(s)	367
BstNSI	RCATGY	3 cut(s)	535, 1159, 1189
BstPAI	GACNNNNGTC	2 cut(s)	239, 400
BstSCI	CCNGG	4 cut(s)	365, 861, 1029, 1163
BstSFI	CTRYAG	1 cut(s)	839
BstUI	CGCG	4 cut(s)	191, 330, 362, 387
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	2 cut(s)	196, 554
BstYI	RGATCY	2 cut(s)	196, 554
BstZI	CGGCCG	2 cut(s)	325, 447
BsuRI	GGCC	8 cut(s)	327, 365, 440, 449, 710, 796, 1163, 1214
BtgI	CCRYGG	2 cut(s)	189, 328
BtgZI	GCGATG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	906
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	3 cut(s)	933, 979, 1222
BtuMI	TCGCGA	1 cut(s)	387
CciI	TCATGA	1 cut(s)	1014
CfoI	GCGC	5 cut(s)	164, 336, 355, 362, 1039
Cfr10I	RCCGGY	5 cut(s)	349, 445, 470, 1179, 1254
Cfr13I	GGNCC	2 cut(s)	291, 1221
Cfr42I	CCGCGG	2 cut(s)	192, 331
CseI	GACGC	2 cut(s)	673, 747
Csp6I	GTAC	3 cut(s)	982, 1177, 1266
CspCI	CAANNNNNGTGG	2 cut(s)	955, 990
CviAII	CATG	8 cut(s)	532, 691, 778, 994, 1015, 1135, 1156, 1186
CviQI	GTAC	3 cut(s)	982, 1177, 1266
DdeI	CTNAG	1 cut(s)	551
DinI	GGCGCC	1 cut(s)	335
DpnI	GATC	9 cut(s)	18, 108, 198, 203, 419, 455, 479, 556, 1125
DpnII	GATC	9 cut(s)	16, 106, 196, 201, 417, 453, 477, 554, 1123
DriI	GACNNNNNGTC	1 cut(s)	658
EaeI	YGGCCR	4 cut(s)	325, 363, 447, 1161
EagI	CGGCCG	2 cut(s)	325, 447
Eam1104I	CTCTTC	1 cut(s)	782
Eam1105I	GACNNNNNGTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	782
EciI	GGCGGA	6 cut(s)	139, 631, 782, 1101, 1113, 1134
EclXI	CGGCCG	2 cut(s)	325, 447
Eco24I	GRGCYC	2 cut(s)	267, 1170
Eco31I	GGTCTC	1 cut(s)	933
Eco47I	GGWCC	2 cut(s)	291, 1221
Eco47III	AGCGCT	2 cut(s)	163, 1038
Eco52I	CGGCCG	2 cut(s)	325, 447
Eco57I	CTGAAG	1 cut(s)	689
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	1221
EcoRII	CCWGG	1 cut(s)	365
EcoT38I	GRGCYC	2 cut(s)	267, 1170
EgeI	GGCGCC	1 cut(s)	335
EheI	GGCGCC	1 cut(s)	335
FaeI	CATG	8 cut(s)	535, 694, 781, 997, 1018, 1138, 1159, 1189
FaqI	GGGAC	2 cut(s)	408, 1207
FatI	CATG	8 cut(s)	531, 690, 777, 993, 1014, 1134, 1155, 1185
FauI	CCCGC	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	2 cut(s)	321, 662
FokI	GGATG	1 cut(s)	913
FriOI	GRGCYC	2 cut(s)	267, 1170
FspBI	CTAG	2 cut(s)	176, 1269
GlaI	GCGC	5 cut(s)	163, 335, 354, 361, 1038
GsaI	CCCAGC	2 cut(s)	395, 485
GsuI	CTGGAG	1 cut(s)	416
HaeII	RGCGCY	4 cut(s)	165, 337, 356, 1040
HaeIII	GGCC	8 cut(s)	327, 365, 440, 449, 710, 796, 1163, 1214
HgaI	GACGC	2 cut(s)	673, 747
HhaI	GCGC	5 cut(s)	164, 336, 355, 362, 1039
Hin1I	GRCGYC	2 cut(s)	334, 758
Hin1II	CATG	8 cut(s)	535, 694, 781, 997, 1018, 1138, 1159, 1189
Hin6I	GCGC	5 cut(s)	162, 334, 353, 360, 1037
HinP1I	GCGC	5 cut(s)	162, 334, 353, 360, 1037
HincII	GTYRAC	2 cut(s)	322, 663
HindII	GTYRAC	2 cut(s)	322, 663
HinfI	GANTC	4 cut(s)	619, 814, 883, 1196
HphI	GGTGA	4 cut(s)	65, 235, 1191, 1265
Hpy166II	GTNNAC	2 cut(s)	322, 663
Hpy188I	TCNGA	8 cut(s)	111, 201, 406, 554, 606, 652, 751, 1195
Hpy188III	TCNNGA	4 cut(s)	386, 679, 852, 1015
Hpy8I	GTNNAC	2 cut(s)	322, 663
Hpy99I	CGWCG	9 cut(s)	257, 326, 410, 547, 586, 664, 667, 1145, 1253
HpyAV	CCTTC	4 cut(s)	180, 777, 786, 969
HpyCH4III	ACNGT	3 cut(s)	733, 974, 1109
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	3 cut(s)	694, 841, 1009
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	724
Hsp92I	GRCGYC	2 cut(s)	334, 758
Hsp92II	CATG	8 cut(s)	535, 694, 781, 997, 1018, 1138, 1159, 1189
HspAI	GCGC	5 cut(s)	162, 334, 353, 360, 1037
KasI	GGCGCC	1 cut(s)	333
KflI	GGGWCCC	1 cut(s)	1221
Kpn2I	TCCGGA	1 cut(s)	851
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	16
KspI	CCGCGG	2 cut(s)	192, 331
Kzo9I	GATC	9 cut(s)	16, 106, 196, 201, 417, 453, 477, 554, 1123
LmnI	GCTCC	6 cut(s)	143, 432, 524, 854, 854, 1073
LweI	GCATC	5 cut(s)	79, 239, 891, 1032, 1240
MaeI	CTAG	2 cut(s)	176, 1269
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	3 cut(s)	241, 1197, 1271
MalI	GATC	9 cut(s)	18, 108, 198, 203, 419, 455, 479, 556, 1125
MbiI	CCGCTC	1 cut(s)	936
MboI	GATC	9 cut(s)	16, 106, 196, 201, 417, 453, 477, 554, 1123
MboII	GAAGA	4 cut(s)	124, 131, 549, 799
MflI	RGATCY	2 cut(s)	196, 554
MhlI	GDGCHC	2 cut(s)	267, 1170
MluCI	AATT	5 cut(s)	574, 673, 892, 910, 945
Mly113I	GGCGCC	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	1205
MmeI	TCCRAC	4 cut(s)	121, 165, 429, 720
MroI	TCCGGA	1 cut(s)	851
MroNI	GCCGGC	1 cut(s)	349
MslI	CAYNNNNRTG	2 cut(s)	344, 536
MspA1I	CMGCKG	5 cut(s)	191, 330, 613, 764, 1150
MspR9I	CCNGG	4 cut(s)	367, 863, 1031, 1165
Mva1269I	GAATGC	2 cut(s)	339, 351
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	4 cut(s)	191, 330, 362, 387
NaeI	GCCGGC	1 cut(s)	351
NarI	GGCGCC	1 cut(s)	334
NciI	CCSGG	3 cut(s)	863, 1031, 1165
NdeII	GATC	9 cut(s)	16, 106, 196, 201, 417, 453, 477, 554, 1123
NgoMIV	GCCGGC	1 cut(s)	349
NlaIII	CATG	8 cut(s)	535, 694, 781, 997, 1018, 1138, 1159, 1189
NlaIV	GGNNCC	8 cut(s)	335, 428, 469, 540, 991, 1069, 1222, 1223
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	3 cut(s)	241, 1197, 1271
NruI	TCGCGA	1 cut(s)	387
NspI	RCATGY	3 cut(s)	535, 1159, 1189
NspV	TTCGAA	1 cut(s)	343
PagI	TCATGA	1 cut(s)	1014
PciI	ACATGT	1 cut(s)	1185
PcsI	WCGNNNNNNNCGW	2 cut(s)	656, 1257
PctI	GAATGC	2 cut(s)	339, 351
PdiI	GCCGGC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	619, 814, 883
Ple19I	CGATCG	1 cut(s)	420
PleI	GAGTC	1 cut(s)	1204
PluTI	GGCGCC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	1204
Ppu21I	YACGTR	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	1221
PscI	ACATGT	1 cut(s)	1185
PshAI	GACNNNNGTC	2 cut(s)	239, 400
Psp5II	RGGWCCY	1 cut(s)	1221
Psp6I	CCWGG	1 cut(s)	365
PspFI	CCCAGC	2 cut(s)	391, 481
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	8 cut(s)	335, 428, 469, 540, 991, 1069, 1222, 1223
PspPI	GGNCC	2 cut(s)	291, 1221
PspPPI	RGGWCCY	1 cut(s)	1221
PstI	CTGCAG	1 cut(s)	843
PsuI	RGATCY	2 cut(s)	196, 554
PvuI	CGATCG	1 cut(s)	420
PvuII	CAGCTG	1 cut(s)	1150
RruI	TCGCGA	1 cut(s)	387
RsaI	GTAC	3 cut(s)	983, 1178, 1267
RsaNI	GTAC	3 cut(s)	982, 1177, 1266
RseI	CAYNNNNRTG	2 cut(s)	344, 536
SacII	CCGCGG	2 cut(s)	192, 331
SalI	GTCGAC	2 cut(s)	320, 661
Sau3AI	GATC	9 cut(s)	16, 106, 196, 201, 417, 453, 477, 554, 1123
Sau96I	GGNCC	2 cut(s)	291, 1221
ScaI	AGTACT	1 cut(s)	1267
SchI	GAGTC	1 cut(s)	1205
ScrFI	CCNGG	4 cut(s)	367, 863, 1031, 1165
SduI	GDGCHC	2 cut(s)	267, 1170
SfaNI	GCATC	5 cut(s)	79, 239, 891, 1032, 1240
SfcI	CTRYAG	1 cut(s)	839
SfiI	GGCCNNNNNGGCC	1 cut(s)	446
SfoI	GGCGCC	1 cut(s)	335
Sfr303I	CCGCGG	2 cut(s)	192, 331
SfuI	TTCGAA	1 cut(s)	343
SgrBI	CCGCGG	2 cut(s)	192, 331
SgrDI	CGTCGACG	1 cut(s)	661
SinI	GGWCC	2 cut(s)	291, 1221
SmiMI	CAYNNNNRTG	2 cut(s)	344, 536
SpeI	ACTAGT	1 cut(s)	1268
Sse9I	AATT	5 cut(s)	574, 673, 892, 910, 945
SspDI	GGCGCC	1 cut(s)	333
SspMI	CTAG	2 cut(s)	176, 1269
StyD4I	CCNGG	4 cut(s)	365, 861, 1029, 1163
TaaI	ACNGT	3 cut(s)	733, 974, 1109
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	6 cut(s)	105, 233, 321, 343, 420, 662
TaqII	GACCGA	1 cut(s)	952
TasI	AATT	5 cut(s)	574, 673, 892, 910, 945
TatI	WGTACW	2 cut(s)	981, 1265
TfiI	GAWTC	3 cut(s)	619, 814, 883
TscAI	CASTG	3 cut(s)	933, 979, 1222
TseFI	GTSAC	3 cut(s)	241, 1197, 1271
Tsp45I	GTSAC	3 cut(s)	241, 1197, 1271
TspDTI	ATGAA	2 cut(s)	1003, 1031
TspGWI	ACGGA	1 cut(s)	1164
TspRI	CASTG	3 cut(s)	933, 979, 1222
VpaK11BI	GGWCC	2 cut(s)	291, 1221
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	1 cut(s)	892
XceI	RCATGY	3 cut(s)	535, 1159, 1189
XmiI	GTMKAC	2 cut(s)	321, 662
XspI	CTAG	2 cut(s)	176, 1269
ZrmI	AGTACT	1 cut(s)	1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.