Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003641

Physical Location & Seq

Genomic Coordinates Forward (+)

64469056 .. 64474300

Gene Structure 5245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGGAAGGCGGCGATGATCATTTCCACCACCACCACCACTACCAACAACAACAGCAGCAGCAGCATCACCACCGCCCCAACTTCCCATTCCAACTCCTCGATCAGAAGAAAGAAGACGAAGCCGCCTCCTGCTCCAACAACTCCGCCGCCGCCAGCGCTTATCCTTCTCTAGCTATCTCCTCCGCGGTAGATCCGATCAACCCAATAAACACCAACGCCACCGCATCGACAGCAGTCACCACCGCCGTCGCTGCCGAGCCCTCCAAGAAGCCGCCGCCCAAGAGGACCTCCACTAAAGACCGCCACACCAAAGTCGACGGCCGCGGGCGCCGCATTCGAATGCCGGCGCTCTGCGCGGCCAGGGTGTTCCAGCTCACTCGCGAGCTGGGACACAAGTCCGACGGCGAAACGATCGAGTGGCTCCTCCAGCAGGCGGAACCGGCCGTGATCGCCGCCACCGGAACCGGCACGATCCCAGCTAACTTCACTTCTCTAAACATCTCGCTACGAAGCTCCGGTTCAAGCATGTCGGTGCCGTCGCAGCTCAGATCTTCTTATTACAGCCCCAATTTCTCGTCGTCCATACACCAGAGTAGTCAGAACCAGCGGCGGAATCTGTTTCAGGGTTTGGGGCTTTCCTCCTCTGACAGCTCGTCGACGCTGCTCAATTTCCAGACCAACACCATGCACTCTATGCTTCAGGCCAAGCAGGAACTACGTGATACGGTGTCGTTGGACTTATCCGAGGCGGCTTCAGCGGCGGAGGGAAGCATGGGAAGGAAGAGAAGGCCAGCCGAACAGGACTTGAATCAAATGGGAAGTGGGTATTTGCTGCAGTCCAGCTCAGGGGCAATCCCGGCGAGCCACCACAGCCAGATTCCGGCAAATTTTTGGATGCTGGCTAATTCCAATAATCCAGCAGTGATGAGCGGAGACCCAATTTGGACATTTCCTTCTGTCAATAACAGTGGGTTGTACAGAGGCACCATGTCAGGCGGCTTGCATTTCATGAACTTCCCTACCCCGGTAGCGCTGATGCCAAGTCAGCAGCAGATGGGAGGCTCCGGCGGCGGTGGAGGCGGAGATAACGGCGGAAATGACGGTAGTGGTGGCGGAGATCATCACAACATGAGCGACGGGCAGCTGAACATGCTGGCCGGGCTCAACCCGTACCGGCACATGTCCTCGGAGTCACCGCAGCAGCAGGCCAGTGGGTCCCACTCGCATCACGGCGGCGGCGGCGACGACCGGCGCGATACTGCCATGAATGAATCTTCGAGGGTTTACTGCATCAATGATTTCGGAGAGGTAGGGTTAAATAGAGGACTGGGGAGTGGGGCCCGGAACCCTTATCAAGTTCCAGGTGTTGGCTCAGGTGGGTGGGACCCGCATGCTGGGACATTGCCCGAACCAATATACAACGTCACTGACAAACAGTTGACAGTTGATATTGAAGGTCTGTTTGGCTGTGCTTCACCGGTGCAGCATCTAATGAATATTTCACAGAGAAGCACAGACTCAGAGAGACTTTGTGTGACACCGCTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009739 GO:0009791 GO:0009889 GO:0010029 GO:0010033 GO:0010229 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031347 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0090567 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

516

Amino Acids

55.15

Weight (kDa)

6.46

Isoelectric Point (pI)

61.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	96 - 231	1.3e-34	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69690
fragaria_vesca	FvH4_4g31520 FvH4_5g15150
malus_domestica	MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1
prunus_persica	Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1
pyrus_communis	pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480
rosa_chinensis	RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021
rosa_laevigata	RLG00000005218 RLG00000006215
rosa_multiflora	Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272330 Rroxscaffold_5G00380970
rosa_rugosa	Rorug04G0323300 Rorug06G0438600
rosa_samantha	Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400
rosa_wichuraiana	Rw4G032020 Rw7G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	327, 532, 983
AccB7I	CCANNNNNTGG	1 cut(s)	1367
AccBSI	CCGCTC	1 cut(s)	930
AccI	GTMKAC	2 cut(s)	315, 656
AccII	CGCG	5 cut(s)	185, 324, 356, 381, 1254
AclWI	GGATC	2 cut(s)	185, 466
AcoI	YGGCCR	4 cut(s)	319, 357, 441, 1155
AcsI	RAATTY	1 cut(s)	886
AcuI	CTGAAG	2 cut(s)	683, 738
AcyI	GRCGYC	1 cut(s)	328
AfaI	GTAC	2 cut(s)	977, 1172
AfeI	AGCGCT	2 cut(s)	157, 1032
AfiI	CCNNNNNNNGG	7 cut(s)	430, 433, 846, 880, 1024, 1367, 1394
AflIII	ACRYGT	1 cut(s)	1179
AgeI	ACCGGT	1 cut(s)	1477
AgsI	TTSAA	3 cut(s)	522, 808, 1454
AhdI	GACNNNNNGTC	1 cut(s)	652
AjnI	CCWGG	2 cut(s)	359, 1360
AjuI	GAANNNNNNNTTGG	4 cut(s)	71, 103, 1446, 1478
AluBI	AGCT	9 cut(s)	173, 373, 385, 479, 513, 544, 651, 843, 1144
AluI	AGCT	9 cut(s)	173, 373, 385, 479, 513, 544, 651, 843, 1144
Alw26I	GTCTC	2 cut(s)	927, 1519
AlwI	GGATC	2 cut(s)	185, 466
Aor51HI	AGCGCT	2 cut(s)	157, 1032
AoxI	GGCC	8 cut(s)	319, 357, 441, 702, 788, 1155, 1206, 1338
ApaI	GGGCCC	1 cut(s)	1342
ApoI	RAATTY	1 cut(s)	886
AsiGI	ACCGGT	1 cut(s)	1477
AspLEI	GCGC	6 cut(s)	158, 330, 349, 356, 1033, 1254
AspS9I	GGNCC	5 cut(s)	285, 1215, 1338, 1339, 1384
AsuC2I	CCSGG	4 cut(s)	857, 1025, 1159, 1342
AsuHPI	GGTGA	4 cut(s)	59, 229, 1185, 1467
AsuII	TTCGAA	1 cut(s)	337
AvaII	GGWCC	3 cut(s)	285, 1215, 1384
BaeGI	GKGCMC	1 cut(s)	1342
BanI	GGYRCC	3 cut(s)	327, 532, 983
BanII	GRGCYC	3 cut(s)	261, 1164, 1342
BbsI	GAAGAC	1 cut(s)	120
BccI	CCATC	1 cut(s)	1048
BceAI	ACGGC	7 cut(s)	230, 334, 418, 428, 520, 1105, 1246
BciT130I	CCWGG	2 cut(s)	361, 1362
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	4 cut(s)	857, 1025, 1159, 1342
BcoDI	GTCTC	2 cut(s)	927, 1519
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	833
BfoI	RGCGCY	4 cut(s)	159, 331, 350, 1034
BglII	AGATCT	1 cut(s)	548
Bme1390I	CCNGG	6 cut(s)	361, 857, 1025, 1159, 1342, 1362
Bme18I	GGWCC	3 cut(s)	285, 1215, 1384
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmgT120I	GGNCC	5 cut(s)	285, 1215, 1338, 1339, 1384
BmrFI	CCNGG	6 cut(s)	361, 857, 1025, 1159, 1342, 1362
BmrI	ACTGGG	1 cut(s)	1337
BmsI	GCATC	7 cut(s)	73, 233, 885, 1026, 1234, 1299, 1495
BmuI	ACTGGG	1 cut(s)	1337
BoxI	GACNNNNGTC	2 cut(s)	233, 394
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	2 cut(s)	844, 1372
Bpu14I	TTCGAA	1 cut(s)	337
BpuMI	CCSGG	4 cut(s)	857, 1025, 1159, 1342
BsaAI	YACGTR	1 cut(s)	719
BsaHI	GRCGYC	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	927
BsaJI	CCNNGG	6 cut(s)	183, 322, 360, 744, 1023, 1185
BsaWI	WCCGGW	3 cut(s)	458, 515, 1477
Bsc4I	CCNNNNNNNGG	7 cut(s)	430, 433, 846, 880, 1024, 1367, 1394
Bse118I	RCCGGY	6 cut(s)	343, 439, 464, 1173, 1248, 1477
Bse1I	ACTGG	2 cut(s)	1209, 1332
Bse3DI	GCAATG	1 cut(s)	1400
BseBI	CCWGG	2 cut(s)	361, 1362
BseDI	CCNNGG	6 cut(s)	183, 322, 360, 744, 1023, 1185
BseGI	GGATG	1 cut(s)	900
BseLI	CCNNNNNNNGG	7 cut(s)	430, 433, 846, 880, 1024, 1367, 1394
BseMI	GCAATG	1 cut(s)	1400
BseMII	CTCAG	4 cut(s)	559, 858, 1386, 1533
BseNI	ACTGG	2 cut(s)	1209, 1332
BseRI	GAGGAG	4 cut(s)	86, 169, 413, 631
BseSI	GKGCMC	1 cut(s)	1342
BseX3I	CGGCCG	2 cut(s)	319, 441
BseYI	CCCAGC	3 cut(s)	385, 475, 1394
BsgI	GTGCAG	1 cut(s)	1502
Bsh1236I	CGCG	5 cut(s)	185, 324, 356, 381, 1254
Bsh1285I	CGRYCG	4 cut(s)	322, 414, 444, 1249
BshFI	GGCC	8 cut(s)	321, 359, 443, 704, 790, 1157, 1208, 1340
BshNI	GGYRCC	3 cut(s)	327, 532, 983
BshTI	ACCGGT	1 cut(s)	1477
BsiEI	CGRYCG	4 cut(s)	322, 414, 444, 1249
BslFI	GGGAC	4 cut(s)	402, 1201, 1397, 1411
BslI	CCNNNNNNNGG	7 cut(s)	430, 433, 846, 880, 1024, 1367, 1394
BsmAI	GTCTC	2 cut(s)	927, 1519
BsmFI	GGGAC	4 cut(s)	402, 1201, 1397, 1411
BsmI	GAATGC	2 cut(s)	333, 345
BsnI	GGCC	8 cut(s)	321, 359, 443, 704, 790, 1157, 1208, 1340
Bso31I	GGTCTC	1 cut(s)	927
Bsp119I	TTCGAA	1 cut(s)	337
Bsp120I	GGGCCC	1 cut(s)	1338
Bsp1286I	GDGCHC	3 cut(s)	261, 1164, 1342
Bsp1407I	TGTACA	1 cut(s)	975
Bsp143I	GATC	9 cut(s)	16, 100, 190, 195, 411, 447, 471, 548, 1117
Bsp68I	TCGCGA	1 cut(s)	381
BspANI	GGCC	8 cut(s)	321, 359, 443, 704, 790, 1157, 1208, 1340
BspCNI	CTCAG	4 cut(s)	558, 857, 1385, 1532
BspFNI	CGCG	5 cut(s)	185, 324, 356, 381, 1254
BspHI	TCATGA	1 cut(s)	1008
BspMAI	CTGCAG	1 cut(s)	837
BspPI	GGATC	2 cut(s)	185, 466
BspT104I	TTCGAA	1 cut(s)	337
BspT107I	GGYRCC	3 cut(s)	327, 532, 983
BspTNI	GGTCTC	1 cut(s)	927
BsrBI	CCGCTC	1 cut(s)	930
BsrDI	GCAATG	1 cut(s)	1400
BsrFI	RCCGGY	6 cut(s)	343, 439, 464, 1173, 1248, 1477
BsrGI	TGTACA	1 cut(s)	975
BsrI	ACTGG	2 cut(s)	1209, 1332
BssAI	RCCGGY	6 cut(s)	343, 439, 464, 1173, 1248, 1477
BssECI	CCNNGG	6 cut(s)	183, 322, 360, 744, 1023, 1185
BssMI	GATC	9 cut(s)	16, 100, 190, 195, 411, 447, 471, 548, 1117
BssNI	GRCGYC	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	361, 1362
Bst4CI	ACNGT	5 cut(s)	727, 968, 1103, 1437, 1444
Bst6I	CTCTTC	1 cut(s)	776
BstACI	GRCGYC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	694
BstAUI	TGTACA	1 cut(s)	975
BstBAI	YACGTR	1 cut(s)	719
BstBI	TTCGAA	1 cut(s)	337
BstDEI	CTNAG	4 cut(s)	545, 844, 1372, 1519
BstDSI	CCRYGG	2 cut(s)	183, 322
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	900
BstFNI	CGCG	5 cut(s)	185, 324, 356, 381, 1254
BstH2I	RGCGCY	4 cut(s)	159, 331, 350, 1034
BstHHI	GCGC	6 cut(s)	158, 330, 349, 356, 1033, 1254
BstKTI	GATC	9 cut(s)	19, 103, 193, 198, 414, 450, 474, 551, 1120
BstMAI	GTCTC	2 cut(s)	927, 1519
BstMBI	GATC	9 cut(s)	16, 100, 190, 195, 411, 447, 471, 548, 1117
BstMCI	CGRYCG	4 cut(s)	322, 414, 444, 1249
BstNI	CCWGG	2 cut(s)	361, 1362
BstNSI	RCATGY	4 cut(s)	529, 1153, 1183, 1394
BstPAI	GACNNNNGTC	2 cut(s)	233, 394
BstSCI	CCNGG	6 cut(s)	359, 855, 1023, 1157, 1340, 1360
BstSFI	CTRYAG	1 cut(s)	833
BstSLI	GKGCMC	1 cut(s)	1342
BstUI	CGCG	5 cut(s)	185, 324, 356, 381, 1254
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	190, 548
BstYI	RGATCY	2 cut(s)	190, 548
BstZI	CGGCCG	2 cut(s)	319, 441
BsuRI	GGCC	8 cut(s)	321, 359, 443, 704, 790, 1157, 1208, 1340
BtgI	CCRYGG	2 cut(s)	183, 322
BtgZI	GCGATG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	900
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	4 cut(s)	927, 973, 1216, 1425
BtuMI	TCGCGA	1 cut(s)	381
CciI	TCATGA	1 cut(s)	1008
CfoI	GCGC	6 cut(s)	158, 330, 349, 356, 1033, 1254
Cfr10I	RCCGGY	6 cut(s)	343, 439, 464, 1173, 1248, 1477
Cfr13I	GGNCC	5 cut(s)	285, 1215, 1338, 1339, 1384
Cfr42I	CCGCGG	2 cut(s)	186, 325
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	976, 1171
CspAI	ACCGGT	1 cut(s)	1477
CspCI	CAANNNNNGTGG	2 cut(s)	949, 984
CviQI	GTAC	2 cut(s)	976, 1171
DdeI	CTNAG	4 cut(s)	545, 844, 1372, 1519
DinI	GGCGCC	1 cut(s)	329
DpnI	GATC	9 cut(s)	18, 102, 192, 197, 413, 449, 473, 550, 1119
DpnII	GATC	9 cut(s)	16, 100, 190, 195, 411, 447, 471, 548, 1117
DriI	GACNNNNNGTC	1 cut(s)	652
EaeI	YGGCCR	4 cut(s)	319, 357, 441, 1155
EagI	CGGCCG	2 cut(s)	319, 441
Eam1104I	CTCTTC	1 cut(s)	776
Eam1105I	GACNNNNNGTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	776
EciI	GGCGGA	7 cut(s)	133, 449, 625, 776, 1095, 1107, 1128
EclXI	CGGCCG	2 cut(s)	319, 441
Eco24I	GRGCYC	3 cut(s)	261, 1164, 1342
Eco31I	GGTCTC	1 cut(s)	927
Eco47I	GGWCC	3 cut(s)	285, 1215, 1384
Eco47III	AGCGCT	2 cut(s)	157, 1032
Eco52I	CGGCCG	2 cut(s)	319, 441
Eco57I	CTGAAG	2 cut(s)	683, 738
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO109I	RGGNCCY	4 cut(s)	285, 1215, 1338, 1384
EcoRII	CCWGG	2 cut(s)	359, 1360
EcoT38I	GRGCYC	3 cut(s)	261, 1164, 1342
EgeI	GGCGCC	1 cut(s)	329
EheI	GGCGCC	1 cut(s)	329
FaqI	GGGAC	4 cut(s)	402, 1201, 1397, 1411
FauI	CCCGC	2 cut(s)	317, 1395
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	2 cut(s)	315, 656
FokI	GGATG	1 cut(s)	907
FriOI	GRGCYC	3 cut(s)	261, 1164, 1342
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	6 cut(s)	157, 329, 348, 355, 1032, 1253
GsaI	CCCAGC	3 cut(s)	389, 479, 1398
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	4 cut(s)	159, 331, 350, 1034
HaeIII	GGCC	8 cut(s)	321, 359, 443, 704, 790, 1157, 1208, 1340
HgaI	GACGC	1 cut(s)	667
HhaI	GCGC	6 cut(s)	158, 330, 349, 356, 1033, 1254
Hin1I	GRCGYC	1 cut(s)	328
Hin6I	GCGC	6 cut(s)	156, 328, 347, 354, 1031, 1252
HinP1I	GCGC	6 cut(s)	156, 328, 347, 354, 1031, 1252
HincII	GTYRAC	3 cut(s)	316, 657, 1440
HindII	GTYRAC	3 cut(s)	316, 657, 1440
HinfI	GANTC	6 cut(s)	613, 808, 877, 1190, 1271, 1517
HphI	GGTGA	4 cut(s)	59, 229, 1185, 1467
Hpy166II	GTNNAC	4 cut(s)	316, 657, 1285, 1440
Hpy188III	TCNNGA	3 cut(s)	380, 673, 1009
Hpy8I	GTNNAC	4 cut(s)	316, 657, 1285, 1440
Hpy99I	CGWCG	9 cut(s)	251, 320, 404, 541, 580, 658, 661, 1139, 1247
HpyAV	CCTTC	5 cut(s)	174, 771, 780, 963, 1448
HpyCH4III	ACNGT	5 cut(s)	727, 968, 1103, 1437, 1444
HpyCH4IV	ACGT	2 cut(s)	718, 1422
HpyCH4V	TGCA	5 cut(s)	688, 835, 1003, 1290, 1483
HpyF3I	CTNAG	4 cut(s)	545, 844, 1372, 1519
HpySE526I	ACGT	2 cut(s)	718, 1422
Hsp92I	GRCGYC	1 cut(s)	328
HspAI	GCGC	6 cut(s)	156, 328, 347, 354, 1031, 1252
KasI	GGCGCC	1 cut(s)	327
KflI	GGGWCCC	2 cut(s)	1215, 1384
KroI	GCCGGC	1 cut(s)	343
KroNI	GCCGGC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	16
KspI	CCGCGG	2 cut(s)	186, 325
Kzo9I	GATC	9 cut(s)	16, 100, 190, 195, 411, 447, 471, 548, 1117
LmnI	GCTCC	4 cut(s)	137, 426, 518, 1067
LweI	GCATC	7 cut(s)	73, 233, 885, 1026, 1234, 1299, 1495
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	718, 1422
MaeIII	GTNAC	4 cut(s)	235, 1191, 1423, 1534
MalI	GATC	9 cut(s)	18, 102, 192, 197, 413, 449, 473, 550, 1119
MbiI	CCGCTC	1 cut(s)	930
MboI	GATC	9 cut(s)	16, 100, 190, 195, 411, 447, 471, 548, 1117
MboII	GAAGA	5 cut(s)	118, 125, 543, 793, 1266
MflI	RGATCY	2 cut(s)	190, 548
MhlI	GDGCHC	3 cut(s)	261, 1164, 1342
MluCI	AATT	5 cut(s)	568, 667, 886, 904, 939
Mly113I	GGCGCC	1 cut(s)	328
MlyI	GAGTC	2 cut(s)	1199, 1511
MmeI	TCCRAC	4 cut(s)	115, 159, 423, 714
MroNI	GCCGGC	1 cut(s)	343
MseI	TTAA	1 cut(s)	1316
MslI	CAYNNNNRTG	2 cut(s)	338, 530
MspA1I	CMGCKG	6 cut(s)	185, 324, 607, 758, 1144, 1543
MspR9I	CCNGG	6 cut(s)	361, 857, 1025, 1159, 1342, 1362
Mva1269I	GAATGC	2 cut(s)	333, 345
MvaI	CCWGG	2 cut(s)	361, 1362
MvnI	CGCG	5 cut(s)	185, 324, 356, 381, 1254
NaeI	GCCGGC	1 cut(s)	345
NarI	GGCGCC	1 cut(s)	328
NciI	CCSGG	4 cut(s)	857, 1025, 1159, 1342
NdeII	GATC	9 cut(s)	16, 100, 190, 195, 411, 447, 471, 548, 1117
NgoMIV	GCCGGC	1 cut(s)	343
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	4 cut(s)	235, 1191, 1423, 1534
NruI	TCGCGA	1 cut(s)	381
NspI	RCATGY	4 cut(s)	529, 1153, 1183, 1394
NspV	TTCGAA	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	1394
PagI	TCATGA	1 cut(s)	1008
PciI	ACATGT	1 cut(s)	1179
PcsI	WCGNNNNNNNCGW	1 cut(s)	1251
PctI	GAATGC	2 cut(s)	333, 345
PdiI	GCCGGC	1 cut(s)	345
PfeI	GAWTC	4 cut(s)	613, 808, 877, 1271
PflMI	CCANNNNNTGG	1 cut(s)	1367
PinAI	ACCGGT	1 cut(s)	1477
Ple19I	CGATCG	1 cut(s)	414
PleI	GAGTC	2 cut(s)	1198, 1511
PluTI	GGCGCC	1 cut(s)	331
PpsI	GAGTC	2 cut(s)	1198, 1511
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	3 cut(s)	285, 1215, 1384
PscI	ACATGT	1 cut(s)	1179
PshAI	GACNNNNGTC	2 cut(s)	233, 394
Psp5II	RGGWCCY	3 cut(s)	285, 1215, 1384
Psp6I	CCWGG	2 cut(s)	359, 1360
PspFI	CCCAGC	3 cut(s)	385, 475, 1394
PspGI	CCWGG	2 cut(s)	359, 1360
PspOMI	GGGCCC	1 cut(s)	1338
PspPI	GGNCC	5 cut(s)	285, 1215, 1338, 1339, 1384
PspPPI	RGGWCCY	3 cut(s)	285, 1215, 1384
PstI	CTGCAG	1 cut(s)	837
PsuI	RGATCY	2 cut(s)	190, 548
PvuI	CGATCG	1 cut(s)	414
PvuII	CAGCTG	1 cut(s)	1144
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	2 cut(s)	977, 1172
RsaNI	GTAC	2 cut(s)	976, 1171
RseI	CAYNNNNRTG	2 cut(s)	338, 530
SacII	CCGCGG	2 cut(s)	186, 325
SalI	GTCGAC	2 cut(s)	314, 655
SaqAI	TTAA	1 cut(s)	1316
Sau3AI	GATC	9 cut(s)	16, 100, 190, 195, 411, 447, 471, 548, 1117
Sau96I	GGNCC	5 cut(s)	285, 1215, 1338, 1339, 1384
SchI	GAGTC	2 cut(s)	1199, 1511
ScrFI	CCNGG	6 cut(s)	361, 857, 1025, 1159, 1342, 1362
SduI	GDGCHC	3 cut(s)	261, 1164, 1342
SfaNI	GCATC	7 cut(s)	73, 233, 885, 1026, 1234, 1299, 1495
SfcI	CTRYAG	1 cut(s)	833
SfoI	GGCGCC	1 cut(s)	329
Sfr303I	CCGCGG	2 cut(s)	186, 325
SfuI	TTCGAA	1 cut(s)	337
SgrAI	CRCCGGYG	1 cut(s)	1477
SgrBI	CCGCGG	2 cut(s)	186, 325
SgrDI	CGTCGACG	1 cut(s)	655
SinI	GGWCC	3 cut(s)	285, 1215, 1384
SmiMI	CAYNNNNRTG	2 cut(s)	338, 530
SphI	GCATGC	1 cut(s)	1394
Sse9I	AATT	5 cut(s)	568, 667, 886, 904, 939
SspDI	GGCGCC	1 cut(s)	327
SspI	AATATT	1 cut(s)	1498
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	6 cut(s)	359, 855, 1023, 1157, 1340, 1360
TaaI	ACNGT	5 cut(s)	727, 968, 1103, 1437, 1444
TaiI	ACGT	2 cut(s)	721, 1425
TaqI	TCGA	7 cut(s)	99, 227, 315, 337, 414, 656, 1277
TasI	AATT	5 cut(s)	568, 667, 886, 904, 939
TatI	WGTACW	1 cut(s)	975
TfiI	GAWTC	4 cut(s)	613, 808, 877, 1271
Tru1I	TTAA	1 cut(s)	1316
Tru9I	TTAA	1 cut(s)	1316
TscAI	CASTG	4 cut(s)	927, 973, 1216, 1432
TseFI	GTSAC	4 cut(s)	235, 1191, 1423, 1534
Tsp45I	GTSAC	4 cut(s)	235, 1191, 1423, 1534
TspDTI	ATGAA	5 cut(s)	997, 1025, 1280, 1284, 1508
TspRI	CASTG	4 cut(s)	927, 973, 1216, 1432
Van91I	CCANNNNNTGG	1 cut(s)	1367
VpaK11BI	GGWCC	3 cut(s)	285, 1215, 1384
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	886
XceI	RCATGY	4 cut(s)	529, 1153, 1183, 1394
XmiI	GTMKAC	2 cut(s)	315, 656
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.