Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003641

Physical Location & Seq

Genomic Coordinates Reverse (-)

28826856 .. 28828139

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1198200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGAAGGAGGTGATGATCATCAACTCCACCACCACCACCACCACTATCAACAACACCAACAACATCAACAACAACATCACCACCGTCCGAACTTCCCCTTCCAGTTGCTAGAGAAAAAAGAATTAGATCACCAAGAAGCCGCCTCCTGCTCCAACTCCACCTCCCCCTACCCTTCTCTAGCCATCACCACCGTCGACCCCACCACCACCAACAACACGGCCTCTACTGCCACAGCCACAACCACCTCAGCTCTCCAAGCTTCTTCCCCCGAGCCCTCCAAAAAGCCACCCCCCAAGCGGACCTCCACCAAGGACCGCCACACGAAAGTCGACGGCCGAGGCCGCCGCATTCGAATGCCGGCTCTATGCGCCGCCAGAGTCTTCCAGCTCACGCGCGAGCTAGGTCACAAGTCCGACGGAGAAACCATTGAGTGGCTTCTCCAGCAGGCCGAGCCCGCGGTGATCGCCGCCACCGGTACCGGCACAATCCCCGCCAACTTCACGTCACTTAACATCTCACTCCGCAGCTCCGGCTCCAGCATGTCGGTCCCCTCGCAGCTAAGATCCTCTTATTACAGCCCGAATTTCTCTCTCCAACAGAACCAGCGGCGGAGCCTCTTTCAGGGCATCGGCCTCTCATCTTCTGACAGCTCTTCGACTCTCCTAAACTTCCAAACAAACACCATGCACGCTTCCATGTTGCAAGCCAAGCAGGAGCTCCGGGATACTGTGTCTTTAGATCTATCGGAGGCGGCGTCGGCAGGGGAGGGGAGCTTGGGAGGGAGGAAGCGTCGGCCGCCGGAGCAGGACTTGAATCATATGGGAGGTGGCGGCGGTGGTGGTGGTGGAGGAGGGTACTTATTGCAGTCGAGCACTGGTGTGGTCCCGGCCAGCCACCCACACAGTCAGATTCCGGCTAATTTTTGGATGCTGGCTAACTCTAACAACCAAGTTATGAGCGGAGACCCTATTTGGACTTTTCCAGCTTCGGTCAACAACAGTGGACTGTATAGAGGAACGATGCCCGGTGGCTTACATTTTATGAATTTCCCCGCCCCAGTCACCGTGTTGCCTAATCAGCAACAATTGAGTGGCTCGGGCGGTGGTGGTGGTGGTAATGATGGCGATAACATGAGCGACGGGCAGTTGAATATGCTCGCTGGACTCAATCCGTACCGGCACATGTCCGGTACAGGTGTTTCAGACTCGCAGCAGGCAAGTGGCTCACACTCACACCACGGCGGGGGTGACGATCGGCACGATAGTACTAGTCACCACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009739 GO:0009791 GO:0009889 GO:0010029 GO:0010033 GO:0010229 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031347 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0090567 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

428

Amino Acids

45.58

Weight (kDa)

6.98

Isoelectric Point (pI)

63.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	101 - 214	3.8e-34	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69690
fragaria_vesca	FvH4_4g31520 FvH4_5g15150
malus_domestica	MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1
prunus_persica	Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1
pyrus_communis	pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480
rosa_chinensis	RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021
rosa_laevigata	RLG00000005218 RLG00000006215
rosa_multiflora	Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272330 Rroxscaffold_5G00380970
rosa_rugosa	Rorug04G0323300 Rorug06G0438600
rosa_samantha	Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400
rosa_wichuraiana	Rw4G032020 Rw7G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	476
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	960
AccI	GTMKAC	2 cut(s)	195, 330
AccII	CGCG	3 cut(s)	394, 396, 458
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	3 cut(s)	334, 794, 888
AcsI	RAATTY	2 cut(s)	583, 1045
AcyI	GRCGYC	1 cut(s)	755
AfaI	GTAC	5 cut(s)	478, 857, 1175, 1192, 1267
AfiI	CCNNNNNNNGG	4 cut(s)	297, 432, 622, 1243
AflIII	ACRYGT	1 cut(s)	1182
AgeI	ACCGGT	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	814, 1150
AhlI	ACTAGT	1 cut(s)	1268
AjiI	CACGTC	1 cut(s)	504
AleI	CACNNNNGTG	1 cut(s)	878
Alw21I	GWGCWC	2 cut(s)	720, 875
Alw26I	GTCTC	1 cut(s)	957
AlwI	GGATC	1 cut(s)	558
Ama87I	CYCGRG	2 cut(s)	269, 1096
AoxI	GGCC	7 cut(s)	219, 334, 340, 447, 631, 794, 888
ApeKI	GCWGC	3 cut(s)	525, 556, 1210
ApoI	RAATTY	2 cut(s)	583, 1045
AsiGI	ACCGGT	1 cut(s)	473
Asp718I	GGTACC	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	371, 396
AspS9I	GGNCC	4 cut(s)	300, 313, 547, 883
AsuC2I	CCSGG	3 cut(s)	722, 887, 1026
AsuHPI	GGTGA	8 cut(s)	23, 71, 122, 178, 472, 1054, 1259, 1265
AsuII	TTCGAA	1 cut(s)	352
AvaI	CYCGRG	2 cut(s)	269, 1096
AvaII	GGWCC	4 cut(s)	300, 313, 547, 883
BaeI	ACNNNNGTAYC	2 cut(s)	1182, 1215
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	3 cut(s)	276, 456, 720
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	2 cut(s)	720, 875
BbvCI	CCTCAGC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	537, 568, 1222
BccI	CCATC	2 cut(s)	191, 1115
BceAI	ACGGC	3 cut(s)	234, 349, 1255
BciVI	GTATCC	1 cut(s)	718
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	3 cut(s)	722, 887, 1026
BcoDI	GTCTC	1 cut(s)	957
BcuI	ACTAGT	1 cut(s)	1268
BfaI	CTAG	4 cut(s)	110, 179, 401, 1269
BfuI	GTATCC	1 cut(s)	718
BglII	AGATCT	1 cut(s)	739
BmcAI	AGTACT	1 cut(s)	1267
Bme1390I	CCNGG	3 cut(s)	722, 887, 1026
Bme18I	GGWCC	4 cut(s)	300, 313, 547, 883
BmeT110I	CYCGRG	2 cut(s)	269, 1096
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	4 cut(s)	300, 313, 547, 883
BmiI	GGNNCC	5 cut(s)	478, 535, 549, 614, 885
BmrFI	CCNGG	3 cut(s)	722, 887, 1026
BmrI	ACTGGG	1 cut(s)	1052
BmsI	GCATC	3 cut(s)	636, 918, 1011
BmuI	ACTGGG	1 cut(s)	1052
BpiI	GAAGAC	1 cut(s)	373
BpmI	CTGGAG	2 cut(s)	425, 520
Bpu10I	CCTNAGC	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	352
BpuMI	CCSGG	3 cut(s)	722, 887, 1026
BsaBI	GATNNNNATC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	755
BsaI	GGTCTC	1 cut(s)	957
BsaJI	CCNNGG	4 cut(s)	309, 337, 456, 1237
BsaWI	WCCGGW	2 cut(s)	473, 1187
BsaXI	ACNNNNNCTCC	6 cut(s)	146, 176, 740, 770, 775, 805
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 432, 622, 1243
Bse118I	RCCGGY	4 cut(s)	358, 473, 479, 1176
Bse1I	ACTGG	3 cut(s)	103, 880, 1058
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	4 cut(s)	309, 337, 456, 1237
BseGI	GGATG	1 cut(s)	933
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	4 cut(s)	297, 432, 622, 1243
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	3 cut(s)	103, 880, 1058
BseRI	GAGGAG	1 cut(s)	864
BseX3I	CGGCCG	2 cut(s)	334, 794
BseXI	GCAGC	3 cut(s)	537, 568, 1222
Bsh1236I	CGCG	3 cut(s)	394, 396, 458
Bsh1285I	CGRYCG	3 cut(s)	337, 797, 1255
BshFI	GGCC	7 cut(s)	221, 336, 342, 449, 633, 796, 890
BshNI	GGYRCC	1 cut(s)	476
BshTI	ACCGGT	1 cut(s)	473
BsiEI	CGRYCG	3 cut(s)	337, 797, 1255
BsiHKAI	GWGCWC	2 cut(s)	720, 875
BsiHKCI	CYCGRG	2 cut(s)	269, 1096
BslFI	GGGAC	2 cut(s)	533, 869
BslI	CCNNNNNNNGG	4 cut(s)	297, 432, 622, 1243
BsmAI	GTCTC	1 cut(s)	957
BsmFI	GGGAC	2 cut(s)	533, 869
BsmI	GAATGC	2 cut(s)	348, 360
BsnI	GGCC	7 cut(s)	221, 336, 342, 449, 633, 796, 890
Bso31I	GGTCTC	1 cut(s)	957
BsoBI	CYCGRG	2 cut(s)	269, 1096
Bsp119I	TTCGAA	1 cut(s)	352
Bsp1286I	GDGCHC	4 cut(s)	276, 456, 720, 875
Bsp143I	GATC	6 cut(s)	16, 127, 462, 563, 739, 1252
BspANI	GGCC	7 cut(s)	221, 336, 342, 449, 633, 796, 890
BspCNI	CTCAG	1 cut(s)	260
BspFNI	CGCG	3 cut(s)	394, 396, 458
BspLI	GGNNCC	5 cut(s)	478, 535, 549, 614, 885
BspPI	GGATC	1 cut(s)	558
BspQI	GCTCTTC	1 cut(s)	658
BspT104I	TTCGAA	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	957
BsrBI	CCGCTC	1 cut(s)	960
BsrFI	RCCGGY	4 cut(s)	358, 473, 479, 1176
BsrI	ACTGG	3 cut(s)	103, 880, 1058
BssAI	RCCGGY	4 cut(s)	358, 473, 479, 1176
BssECI	CCNNGG	4 cut(s)	309, 337, 456, 1237
BssMI	GATC	6 cut(s)	16, 127, 462, 563, 739, 1252
BssNI	GRCGYC	1 cut(s)	755
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	7 cut(s)	86, 193, 730, 905, 1001, 1008, 1066
Bst6I	CTCTTC	1 cut(s)	658
BstACI	GRCGYC	1 cut(s)	755
BstBI	TTCGAA	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	247, 560
BstDSI	CCRYGG	2 cut(s)	456, 1237
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	1 cut(s)	933
BstFNI	CGCG	3 cut(s)	394, 396, 458
BstHHI	GCGC	2 cut(s)	371, 396
BstKTI	GATC	6 cut(s)	19, 130, 465, 566, 742, 1255
BstMAI	GTCTC	1 cut(s)	957
BstMBI	GATC	6 cut(s)	16, 127, 462, 563, 739, 1252
BstMCI	CGRYCG	3 cut(s)	337, 797, 1255
BstNSI	RCATGY	2 cut(s)	544, 1186
BstSCI	CCNGG	3 cut(s)	720, 885, 1024
BstUI	CGCG	3 cut(s)	394, 396, 458
BstV1I	GCAGC	3 cut(s)	537, 568, 1222
BstV2I	GAAGAC	1 cut(s)	373
BstX2I	RGATCY	2 cut(s)	563, 739
BstYI	RGATCY	2 cut(s)	563, 739
BstZI	CGGCCG	2 cut(s)	334, 794
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	7 cut(s)	221, 336, 342, 449, 633, 796, 890
BtgI	CCRYGG	2 cut(s)	456, 1237
BtrI	CACGTC	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	933
BtsIMutI	CAGTG	2 cut(s)	873, 1006
CfoI	GCGC	2 cut(s)	371, 396
Cfr10I	RCCGGY	4 cut(s)	358, 473, 479, 1176
Cfr13I	GGNCC	4 cut(s)	300, 313, 547, 883
Cfr42I	CCGCGG	1 cut(s)	459
CseI	GACGC	2 cut(s)	744, 779
Csp6I	GTAC	5 cut(s)	477, 856, 1174, 1191, 1266
CspAI	ACCGGT	1 cut(s)	473
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	5 cut(s)	541, 685, 697, 1132, 1183
CviQI	GTAC	5 cut(s)	477, 856, 1174, 1191, 1266
DdeI	CTNAG	2 cut(s)	247, 560
DpnI	GATC	6 cut(s)	18, 129, 464, 565, 741, 1254
DpnII	GATC	6 cut(s)	16, 127, 462, 563, 739, 1252
EaeI	YGGCCR	3 cut(s)	334, 794, 888
EagI	CGGCCG	2 cut(s)	334, 794
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
EciI	GGCGGA	1 cut(s)	625
Ecl136II	GAGCTC	1 cut(s)	718
EclXI	CGGCCG	2 cut(s)	334, 794
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	3 cut(s)	276, 456, 720
Eco31I	GGTCTC	1 cut(s)	957
Eco47I	GGWCC	4 cut(s)	300, 313, 547, 883
Eco52I	CGGCCG	2 cut(s)	334, 794
Eco53kI	GAGCTC	1 cut(s)	718
Eco88I	CYCGRG	2 cut(s)	269, 1096
EcoICRI	GAGCTC	1 cut(s)	718
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	3 cut(s)	276, 456, 720
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	5 cut(s)	544, 688, 700, 1135, 1186
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FaqI	GGGAC	2 cut(s)	533, 869
FatI	CATG	5 cut(s)	540, 684, 696, 1131, 1182
FauI	CCCGC	4 cut(s)	463, 499, 1060, 1235
FauNDI	CATATG	1 cut(s)	819
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	2 cut(s)	195, 330
FokI	GGATG	1 cut(s)	940
FriOI	GRGCYC	3 cut(s)	276, 456, 720
FspBI	CTAG	4 cut(s)	110, 179, 401, 1269
GlaI	GCGC	2 cut(s)	370, 395
GsuI	CTGGAG	2 cut(s)	425, 520
HaeIII	GGCC	7 cut(s)	221, 336, 342, 449, 633, 796, 890
HgaI	GACGC	2 cut(s)	744, 779
HhaI	GCGC	2 cut(s)	371, 396
Hin1I	GRCGYC	1 cut(s)	755
Hin1II	CATG	5 cut(s)	544, 688, 700, 1135, 1186
Hin6I	GCGC	2 cut(s)	369, 394
HinP1I	GCGC	2 cut(s)	369, 394
HincII	GTYRAC	3 cut(s)	196, 331, 994
HindII	GTYRAC	3 cut(s)	196, 331, 994
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	6 cut(s)	378, 658, 814, 910, 1164, 1205
HphI	GGTGA	8 cut(s)	23, 71, 122, 178, 472, 1054, 1259, 1265
Hpy166II	GTNNAC	4 cut(s)	196, 331, 994, 1004
Hpy188I	TCNGA	6 cut(s)	90, 415, 646, 748, 909, 1204
Hpy8I	GTNNAC	4 cut(s)	196, 331, 994, 1004
Hpy99I	CGWCG	6 cut(s)	197, 335, 419, 760, 795, 1142
HpyAV	CCTTC	2 cut(s)	109, 183
HpyCH4III	ACNGT	7 cut(s)	86, 193, 730, 905, 1001, 1008, 1066
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	3 cut(s)	688, 703, 865
HpyF3I	CTNAG	2 cut(s)	247, 560
HpySE526I	ACGT	1 cut(s)	503
Hsp92I	GRCGYC	1 cut(s)	755
Hsp92II	CATG	5 cut(s)	544, 688, 700, 1135, 1186
HspAI	GCGC	2 cut(s)	369, 394
KpnI	GGTACC	1 cut(s)	480
KroI	GCCGGC	1 cut(s)	358
KroNI	GCCGGC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	16
KspI	CCGCGG	1 cut(s)	459
Kzo9I	GATC	6 cut(s)	16, 127, 462, 563, 739, 1252
LguI	GCTCTTC	1 cut(s)	658
LmnI	GCTCC	8 cut(s)	155, 533, 539, 612, 715, 723, 771, 802
Lsp1109I	GCAGC	3 cut(s)	537, 568, 1222
LweI	GCATC	3 cut(s)	636, 918, 1011
MaeI	CTAG	4 cut(s)	110, 179, 401, 1269
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	5 cut(s)	404, 504, 1060, 1247, 1271
MalI	GATC	6 cut(s)	18, 129, 464, 565, 741, 1254
MbiI	CCGCTC	1 cut(s)	960
MboI	GATC	6 cut(s)	16, 127, 462, 563, 739, 1252
MboII	GAAGA	4 cut(s)	255, 373, 633, 645
MfeI	CAATTG	1 cut(s)	1085
MflI	RGATCY	2 cut(s)	563, 739
MhlI	GDGCHC	4 cut(s)	276, 456, 720, 875
MluCI	AATT	5 cut(s)	122, 583, 919, 1045, 1085
MlyI	GAGTC	4 cut(s)	387, 652, 1158, 1199
MmeI	TCCRAC	3 cut(s)	177, 438, 619
MroNI	GCCGGC	1 cut(s)	358
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	2 cut(s)	353, 878
MspA1I	CMGCKG	2 cut(s)	458, 607
MspR9I	CCNGG	3 cut(s)	722, 887, 1026
MunI	CAATTG	1 cut(s)	1085
Mva1269I	GAATGC	2 cut(s)	348, 360
MvnI	CGCG	3 cut(s)	394, 396, 458
NaeI	GCCGGC	1 cut(s)	360
NciI	CCSGG	3 cut(s)	722, 887, 1026
NdeI	CATATG	1 cut(s)	819
NdeII	GATC	6 cut(s)	16, 127, 462, 563, 739, 1252
NgoMIV	GCCGGC	1 cut(s)	358
NlaIII	CATG	5 cut(s)	544, 688, 700, 1135, 1186
NlaIV	GGNNCC	5 cut(s)	478, 535, 549, 614, 885
NmeAIII	GCCGAG	2 cut(s)	362, 475
NmuCI	GTSAC	5 cut(s)	404, 504, 1060, 1247, 1271
NspI	RCATGY	2 cut(s)	544, 1186
NspV	TTCGAA	1 cut(s)	352
OliI	CACNNNNGTG	1 cut(s)	878
PciI	ACATGT	1 cut(s)	1182
PciSI	GCTCTTC	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	752, 1257
PctI	GAATGC	2 cut(s)	348, 360
PdiI	GCCGGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	814, 910
PflMI	CCANNNNNTGG	1 cut(s)	432
PfoI	TCCNGGA	1 cut(s)	720
PinAI	ACCGGT	1 cut(s)	473
Ple19I	CGATCG	1 cut(s)	1255
PleI	GAGTC	4 cut(s)	386, 652, 1158, 1199
PpsI	GAGTC	4 cut(s)	386, 652, 1158, 1199
PscI	ACATGT	1 cut(s)	1182
Psp124BI	GAGCTC	1 cut(s)	720
PspN4I	GGNNCC	5 cut(s)	478, 535, 549, 614, 885
PspPI	GGNCC	4 cut(s)	300, 313, 547, 883
PsuI	RGATCY	2 cut(s)	563, 739
PvuI	CGATCG	1 cut(s)	1255
RsaI	GTAC	5 cut(s)	478, 857, 1175, 1192, 1267
RsaNI	GTAC	5 cut(s)	477, 856, 1174, 1191, 1266
RseI	CAYNNNNRTG	2 cut(s)	353, 878
SacI	GAGCTC	1 cut(s)	720
SacII	CCGCGG	1 cut(s)	459
SalI	GTCGAC	2 cut(s)	194, 329
SapI	GCTCTTC	1 cut(s)	658
SaqAI	TTAA	1 cut(s)	510
Sau3AI	GATC	6 cut(s)	16, 127, 462, 563, 739, 1252
Sau96I	GGNCC	4 cut(s)	300, 313, 547, 883
ScaI	AGTACT	1 cut(s)	1267
SchI	GAGTC	4 cut(s)	387, 652, 1158, 1199
ScrFI	CCNGG	3 cut(s)	722, 887, 1026
SduI	GDGCHC	4 cut(s)	276, 456, 720, 875
SfaNI	GCATC	3 cut(s)	636, 918, 1011
Sfr303I	CCGCGG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	352
SgrBI	CCGCGG	1 cut(s)	459
SinI	GGWCC	4 cut(s)	300, 313, 547, 883
SmiMI	CAYNNNNRTG	2 cut(s)	353, 878
SpeI	ACTAGT	1 cut(s)	1268
Sse9I	AATT	5 cut(s)	122, 583, 919, 1045, 1085
SspMI	CTAG	4 cut(s)	110, 179, 401, 1269
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	3 cut(s)	720, 885, 1024
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	7 cut(s)	86, 193, 730, 905, 1001, 1008, 1066
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	5 cut(s)	195, 330, 352, 656, 869
TaqII	GACCGA	2 cut(s)	535, 979
TasI	AATT	5 cut(s)	122, 583, 919, 1045, 1085
TatI	WGTACW	1 cut(s)	1265
TauI	GCSGC	9 cut(s)	143, 345, 348, 374, 470, 610, 755, 799, 834
TfiI	GAWTC	2 cut(s)	814, 910
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	2 cut(s)	880, 1006
TseFI	GTSAC	5 cut(s)	404, 504, 1060, 1247, 1271
TseI	GCWGC	3 cut(s)	525, 556, 1210
Tsp45I	GTSAC	5 cut(s)	404, 504, 1060, 1247, 1271
TspDTI	ATGAA	1 cut(s)	1058
TspGWI	ACGGA	2 cut(s)	432, 1161
TspRI	CASTG	2 cut(s)	880, 1006
Van91I	CCANNNNNTGG	1 cut(s)	432
VpaK11BI	GGWCC	4 cut(s)	300, 313, 547, 883
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	2 cut(s)	583, 1045
XceI	RCATGY	2 cut(s)	544, 1186
XmiI	GTMKAC	2 cut(s)	195, 330
XspI	CTAG	4 cut(s)	110, 179, 401, 1269
ZrmI	AGTACT	1 cut(s)	1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.