Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003641

Physical Location & Seq

Genomic Coordinates Reverse (-)

60902697 .. 60903122

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG295500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCGGTGCCGTCGCAGCTCAGATCTTCTTATTACAGCCCCAATTTTTCGTCTTCCATACACCAGAGTAGTCAGAACCAGCGGCAGAATCTGTTTCAGGGTTTGGGGCTTTCCTCCTCGGACAGCTCGTCGACGCTGCCCAATTTCCAGACCAACACCATGCACTCTATGCTTCAGGCCAAGCAGGAACTACGTGATACGGTGTCGTTGGACTTATCAGTGGCGGCGTCAGCGGCGGAGGGAAGCATGGGAAGGAAGAGAAGGCCAGCCGAACAGGACTTGAATCAAATGGGGAGTGGGTATTTACTGCAGTCCAGCTCCAGAGCAATCCCGGCTAGCCACCACAGCCAGATTCTGACCAATTTTTGGATGCTGGCGAATTCCAATAATCCAGCAGTGATGAGCGGAGACCCAAAAAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009739 GO:0009791 GO:0009889 GO:0010029 GO:0010033 GO:0010229 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031347 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0090567 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

141

Amino Acids

15.41

Weight (kDa)

9.69

Isoelectric Point (pI)

82.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69690
fragaria_vesca	FvH4_4g31520 FvH4_5g15150
malus_domestica	MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1
prunus_persica	Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1
pyrus_communis	pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480
rosa_chinensis	RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021
rosa_laevigata	RLG00000005218 RLG00000006215
rosa_multiflora	Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272330 Rroxscaffold_5G00380970
rosa_rugosa	Rorug04G0323300 Rorug06G0438600
rosa_samantha	Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400
rosa_wichuraiana	Rw4G032020 Rw7G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	131
AciI	CCGC	5 cut(s)	82, 224, 233, 236, 405
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	283
AhdI	GACNNNNNGTC	1 cut(s)	127
AluBI	AGCT	3 cut(s)	19, 126, 318
AluI	AGCT	3 cut(s)	19, 126, 318
Alw26I	GTCTC	1 cut(s)	402
AlwNI	CAGNNNCTG	2 cut(s)	91, 355
AoxI	GGCC	2 cut(s)	177, 263
ApeKI	GCWGC	2 cut(s)	16, 136
ApoI	RAATTY	1 cut(s)	379
AsuC2I	CCSGG	1 cut(s)	332
AsuNHI	GCTAGC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	28, 123
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	308
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	5 cut(s)	17, 83, 137, 225, 234
BlsI	GCNGC	5 cut(s)	18, 84, 138, 226, 235
Bme1390I	CCNGG	1 cut(s)	332
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	360
BmtI	GCTAGC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	28, 123
BshFI	GGCC	2 cut(s)	179, 265
BshNI	GGYRCC	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	179, 265
Bso31I	GGTCTC	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	5 cut(s)	82, 224, 233, 236, 405
BspANI	GGCC	2 cut(s)	179, 265
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	312
BspOI	GCTAGC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	402
BsrBI	CCGCTC	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	23
BssNI	GRCGYC	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	267, 337, 375
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	375
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 169, 230, 233, 332, 345
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	28, 123
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	179, 265
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	225, 402
Cac8I	GCNNGC	3 cut(s)	267, 337, 375
CaiI	CAGNNNCTG	2 cut(s)	91, 355
CseI	GACGC	2 cut(s)	142, 216
CviAII	CATG	2 cut(s)	160, 247
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
DriI	GACNNNNNGTC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	251
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	379
FaeI	CATG	2 cut(s)	163, 250
FaiI	YATR	4 cut(s)	59, 161, 170, 248
FatI	CATG	2 cut(s)	159, 246
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	5 cut(s)	17, 83, 137, 225, 234
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	5 cut(s)	17, 83, 137, 225, 234
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	5 cut(s)	17, 83, 137, 225, 234
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	179, 265
HapII	CCGG	1 cut(s)	332
HgaI	GACGC	2 cut(s)	142, 216
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	163, 250
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	3 cut(s)	88, 283, 352
HpaII	CCGG	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	4 cut(s)	23, 75, 121, 357
Hpy188III	TCNNGA	2 cut(s)	148, 321
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	3 cut(s)	16, 133, 136
HpyAV	CCTTC	2 cut(s)	246, 255
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	163, 310
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 169, 230, 233, 332, 345
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	193
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	163, 250
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	2 cut(s)	28, 123
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	193
MalI	GATC	1 cut(s)	25
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	1 cut(s)	23
MboII	GAAGA	3 cut(s)	18, 45, 268
MflI	RGATCY	1 cut(s)	23
MluCI	AATT	5 cut(s)	43, 142, 361, 379, 421
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	3 cut(s)	124, 127, 232
MspA1I	CMGCKG	2 cut(s)	82, 233
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	6 cut(s)	16, 169, 230, 233, 332, 345
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	1 cut(s)	23
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	2 cut(s)	163, 250
NlaIV	GGNNCC	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PfeI	GAWTC	3 cut(s)	88, 283, 352
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	5 cut(s)	18, 84, 138, 226, 235
Ppu21I	YACGTR	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	2 cut(s)	91, 355
PsuI	RGATCY	1 cut(s)	23
SalI	GTCGAC	1 cut(s)	130
SatI	GCNGC	5 cut(s)	17, 83, 137, 225, 234
Sau3AI	GATC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	4 cut(s)	21, 128, 196, 320
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	308
SgrDI	CGTCGACG	1 cut(s)	130
Sse9I	AATT	5 cut(s)	43, 142, 361, 379, 421
SsiI	CCGC	5 cut(s)	82, 224, 233, 236, 405
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	131
TasI	AATT	5 cut(s)	43, 142, 361, 379, 421
TauI	GCSGC	3 cut(s)	85, 227, 236
TfiI	GAWTC	3 cut(s)	88, 283, 352
TscAI	CASTG	2 cut(s)	225, 402
TseI	GCWGC	2 cut(s)	16, 136
TspRI	CASTG	2 cut(s)	225, 402
Van91I	CCANNNNNTGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	131
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.