Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003641

Physical Location & Seq

Genomic Coordinates Reverse (-)

5301321 .. 5302592

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAAGGTGATGAAAATGGGATCCGCATCCGGCCCAATTTTCCATTACAGTTTCTCGACAAGAGAAAGGAGGAAGAAGCAGCTGCCTCCTCCTCCAGCTACGGTGGCGCTGAGCCTGCAGGTTCTTCCAAGGCCTTGGTCGTTGCCCGATCCACTTCCGATGTCTCCAGCATTCAAGAAAAGAAGCCTGCTCCTCCCAAGAGGACGTCAACGAAAGACAGGCACACCAAGGTGGACGGTCGTGGCCGCCGGATCCGCATGCCTGCCACGTGCGCCGCTAGGGTTTTTCAGCTGACCAGAGAGCTAGGGCACAAGTCGGATGGGGAGACCATCGAGTGGCTGCTCCAGCAGGCCGAGCCGGCCGTCATCGCAGCCACCGGGACCGGCACTATTCCCGCCAACTTTACATCCCTCAACATCTCGCTGAGGAGCTCCGGCTCTAGCATGTCGGCGCCGTCGCACTTGAGGACCAGCGGCTACTTCAACCCGACCAACAGCAGTAGCAACCTGTTGTTCGGCGGCGGCGCATCGCAGTTGATGGAGGAGCAGCAGCGCGGCAGGGTCTTGTTTCCTGGGGTTGATTTGTCTCCGTCTTCAATGTTGTTGAATTTCAACTCCGGAAATGTGAACGCCATGTTGGAAGCCAAGCAAGAAATGCGCGATCAAGGTAATAATAATACTAGTGCTGCTACTACTCTTGATCTTGATCATATGTCCAGAGAAGGGAGTAGTATAGGAAGAAAGAGAAGGCCTGACGAGCAAGATTTGTTATCGTCATCATCGTCCCATACTAGTCATAGTCAATTGGGGAATTACATGTTGCAATCGAGCACGGGGTCGATTCCGGCGAGCCAGAGTACGATTCCGGCGACATTTTGGATGGTGGCGAACAATCCTTCTAGTAACAACAGCAATCAAGGCCAGGCTGGGAATATGAGTGGTGGTGGCGGTGGCGGTGCTCATCTTCATCATCAAGACCCACCTATGTGGACATTTCCCACTACTGTTAACGGTAACCATGGGCTGCATTTCATGAATTTTGCTCCTCCAATGGCAATATTACCAAGTCAAGTGCAATTGGGGACCTCGGTATTGAGCACTGGTGGAGGCGGCGGAGGAGGCGCAATGGCGGACAGCCACTTGGGTATGCTGGCAGCGCTCAACGCGTATAGGCCAATTCTCAGCGGTGGCGCTCCGGTGAATGGGCAGCATCCATCAGACGATGCAGATGAGGGACACCATGATGAGCATTCAAATGCTAGTCAACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009889 GO:0009908 GO:0009962 GO:0009987 GO:0010033 GO:0010229 GO:0010252 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0031323 GO:0031326 GO:0031537 GO:0031540 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042592 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0140110 GO:1901360 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

424

Amino Acids

44.61

Weight (kDa)

6.6

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	69 - 229	1.3e-34	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69690
fragaria_vesca	FvH4_4g31520 FvH4_5g15150
malus_domestica	MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1
prunus_persica	Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1
pyrus_communis	pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480
rosa_chinensis	RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021
rosa_laevigata	RLG00000005218 RLG00000006215
rosa_multiflora	Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272330 Rroxscaffold_5G00380970
rosa_rugosa	Rorug04G0323300 Rorug06G0438600
rosa_samantha	Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400
rosa_wichuraiana	Rw4G032020 Rw7G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	336
AccII	CGCG	3 cut(s)	555, 660, 1166
AccIII	TCCGGA	1 cut(s)	617
AclI	AACGTT	1 cut(s)	1267
AclWI	GGATC	5 cut(s)	16, 29, 144, 247, 260
AcoI	YGGCCR	2 cut(s)	244, 360
AcsI	RAATTY	2 cut(s)	607, 1036
AcvI	CACGTG	1 cut(s)	270
AcyI	GRCGYC	2 cut(s)	206, 452
AfaI	GTAC	1 cut(s)	859
AfeI	AGCGCT	1 cut(s)	1158
AfiI	CCNNNNNNNGG	3 cut(s)	336, 723, 1202
AflIII	ACRYGT	2 cut(s)	816, 1164
AgsI	TTSAA	6 cut(s)	176, 484, 597, 607, 613, 1254
AhlI	ACTAGT	2 cut(s)	680, 791
AjnI	CCWGG	2 cut(s)	571, 921
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AleI	CACNNNNGTG	2 cut(s)	230, 985
AluBI	AGCT	5 cut(s)	83, 99, 292, 304, 432
AluI	AGCT	5 cut(s)	83, 99, 292, 304, 432
Alw21I	GWGCWC	4 cut(s)	434, 833, 961, 1100
Alw26I	GTCTC	3 cut(s)	169, 320, 591
AlwI	GGATC	5 cut(s)	16, 29, 144, 247, 260
Aor13HI	TCCGGA	1 cut(s)	617
Aor51HI	AGCGCT	1 cut(s)	1158
AoxI	GGCC	8 cut(s)	32, 132, 244, 351, 360, 749, 919, 1172
ApoI	RAATTY	2 cut(s)	607, 1036
AspLEI	GCGC	9 cut(s)	110, 275, 454, 527, 555, 660, 1124, 1159, 1193
AspS9I	GGNCC	4 cut(s)	33, 381, 468, 1083
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	20, 1210
AvaII	GGWCC	3 cut(s)	381, 468, 1083
BaeGI	GKGCMC	1 cut(s)	312
BamHI	GGATCC	2 cut(s)	21, 252
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	434
BbrPI	CACGTG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	4 cut(s)	434, 833, 961, 1100
BbvCI	CCTCAGC	1 cut(s)	425
BccI	CCATC	5 cut(s)	314, 338, 532, 874, 1222
BceAI	ACGGC	2 cut(s)	347, 439
BciT130I	CCWGG	2 cut(s)	573, 923
BclI	TGATCA	1 cut(s)	706
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	3 cut(s)	169, 320, 591
BcuI	ACTAGT	2 cut(s)	680, 791
BfaI	CTAG	7 cut(s)	279, 305, 441, 681, 792, 900, 1260
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	4 cut(s)	111, 455, 1160, 1194
BfuAI	ACCTGC	1 cut(s)	110
BglI	GCCNNNNNGGC	1 cut(s)	359
BlpI	GCTNAGC	1 cut(s)	111
Bme1390I	CCNGG	3 cut(s)	379, 573, 923
Bme18I	GGWCC	3 cut(s)	381, 468, 1083
BmgT120I	GGNCC	4 cut(s)	33, 381, 468, 1083
BmiI	GGNNCC	5 cut(s)	23, 254, 382, 453, 1084
BmrFI	CCNGG	3 cut(s)	379, 573, 923
BmsI	GCATC	4 cut(s)	36, 536, 1213, 1219
BpiI	GAAGAC	1 cut(s)	585
BpmI	CTGGAG	3 cut(s)	79, 151, 329
Bpu10I	CCTNAGC	1 cut(s)	425
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	270
BsaBI	GATNNNNATC	2 cut(s)	26, 705
BsaHI	GRCGYC	2 cut(s)	206, 452
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	6 cut(s)	129, 135, 228, 572, 1018, 1086
BsaWI	WCCGGW	2 cut(s)	617, 1195
Bsc4I	CCNNNNNNNGG	3 cut(s)	336, 723, 1202
Bse118I	RCCGGY	2 cut(s)	358, 383
Bse1I	ACTGG	1 cut(s)	1105
Bse3DI	GCAATG	1 cut(s)	1131
Bse8I	GATNNNNATC	2 cut(s)	26, 705
BseAI	TCCGGA	1 cut(s)	617
BseBI	CCWGG	2 cut(s)	573, 923
BseDI	CCNNGG	6 cut(s)	129, 135, 228, 572, 1018, 1086
BseGI	GGATG	5 cut(s)	27, 325, 407, 885, 1210
BseJI	GATNNNNATC	2 cut(s)	26, 705
BseLI	CCNNNNNNNGG	3 cut(s)	336, 723, 1202
BseMI	GCAATG	1 cut(s)	1131
BseMII	CTCAG	3 cut(s)	102, 416, 1195
BseNI	ACTGG	1 cut(s)	1105
BseRI	GAGGAG	7 cut(s)	79, 82, 183, 442, 557, 1035, 1131
BseSI	GKGCMC	1 cut(s)	312
BseX3I	CGGCCG	1 cut(s)	360
BseYI	CCCAGC	1 cut(s)	926
Bsh1236I	CGCG	3 cut(s)	555, 660, 1166
Bsh1285I	CGRYCG	2 cut(s)	241, 363
BshFI	GGCC	8 cut(s)	34, 134, 246, 353, 362, 751, 921, 1174
BshNI	GGYRCC	1 cut(s)	451
BsiEI	CGRYCG	2 cut(s)	241, 363
BsiHKAI	GWGCWC	4 cut(s)	434, 833, 961, 1100
BslFI	GGGAC	4 cut(s)	394, 769, 1096, 1248
BslI	CCNNNNNNNGG	3 cut(s)	336, 723, 1202
BsmAI	GTCTC	3 cut(s)	169, 320, 591
BsmFI	GGGAC	4 cut(s)	394, 769, 1096, 1248
BsmI	GAATGC	2 cut(s)	171, 1249
BsnI	GGCC	8 cut(s)	34, 134, 246, 353, 362, 751, 921, 1174
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	5 cut(s)	312, 434, 833, 961, 1100
Bsp13I	TCCGGA	1 cut(s)	617
Bsp143I	GATC	6 cut(s)	21, 149, 252, 661, 700, 706
Bsp1720I	GCTNAGC	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	1018
BspANI	GGCC	8 cut(s)	34, 134, 246, 353, 362, 751, 921, 1174
BspCNI	CTCAG	3 cut(s)	103, 417, 1194
BspEI	TCCGGA	1 cut(s)	617
BspFNI	CGCG	3 cut(s)	555, 660, 1166
BspHI	TCATGA	1 cut(s)	1032
BspLI	GGNNCC	5 cut(s)	23, 254, 382, 453, 1084
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	5 cut(s)	16, 29, 144, 247, 260
BspT107I	GGYRCC	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	1131
BsrFI	RCCGGY	2 cut(s)	358, 383
BsrI	ACTGG	1 cut(s)	1105
BssAI	RCCGGY	2 cut(s)	358, 383
BssECI	CCNNGG	6 cut(s)	129, 135, 228, 572, 1018, 1086
BssMI	GATC	6 cut(s)	21, 149, 252, 661, 700, 706
BssNI	GRCGYC	2 cut(s)	206, 452
BssT1I	CCWWGG	4 cut(s)	129, 135, 228, 1018
Bst2UI	CCWGG	2 cut(s)	573, 923
Bst4CI	ACNGT	5 cut(s)	51, 104, 239, 1006, 1013
BstACI	GRCGYC	2 cut(s)	206, 452
BstAPI	GCANNNNNTGC	1 cut(s)	655
BstBAI	YACGTR	1 cut(s)	270
BstC8I	GCNNGC	8 cut(s)	117, 189, 260, 264, 351, 360, 850, 1152
BstDEI	CTNAG	3 cut(s)	111, 425, 1181
BstDSI	CCRYGG	1 cut(s)	1018
BstEII	GGTNACC	1 cut(s)	1013
BstF5I	GGATG	5 cut(s)	27, 325, 407, 885, 1210
BstFNI	CGCG	3 cut(s)	555, 660, 1166
BstH2I	RGCGCY	4 cut(s)	111, 455, 1160, 1194
BstHHI	GCGC	9 cut(s)	110, 275, 454, 527, 555, 660, 1124, 1159, 1193
BstKTI	GATC	6 cut(s)	24, 152, 255, 664, 703, 709
BstMAI	GTCTC	3 cut(s)	169, 320, 591
BstMBI	GATC	6 cut(s)	21, 149, 252, 661, 700, 706
BstMCI	CGRYCG	2 cut(s)	241, 363
BstNI	CCWGG	2 cut(s)	573, 923
BstNSI	RCATGY	3 cut(s)	262, 448, 820
BstPI	GGTNACC	1 cut(s)	1013
BstSCI	CCNGG	3 cut(s)	377, 571, 921
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	312
BstUI	CGCG	3 cut(s)	555, 660, 1166
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	2 cut(s)	21, 252
BstXI	CCANNNNNNTGG	2 cut(s)	136, 987
BstYI	RGATCY	2 cut(s)	21, 252
BstZI	CGGCCG	1 cut(s)	360
BsuRI	GGCC	8 cut(s)	34, 134, 246, 353, 362, 751, 921, 1174
BtgI	CCRYGG	1 cut(s)	1018
BtgZI	GCGATG	2 cut(s)	352, 513
BtsCI	GGATG	5 cut(s)	27, 325, 407, 885, 1210
BtsIMutI	CAGTG	1 cut(s)	1098
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	8 cut(s)	117, 189, 260, 264, 351, 360, 850, 1152
CciI	TCATGA	1 cut(s)	1032
CfoI	GCGC	9 cut(s)	110, 275, 454, 527, 555, 660, 1124, 1159, 1193
Cfr10I	RCCGGY	2 cut(s)	358, 383
Cfr13I	GGNCC	4 cut(s)	33, 381, 468, 1083
Csp6I	GTAC	1 cut(s)	858
CviAII	CATG	7 cut(s)	259, 445, 634, 817, 1019, 1033, 1241
CviQI	GTAC	1 cut(s)	858
DdeI	CTNAG	3 cut(s)	111, 425, 1181
DinI	GGCGCC	1 cut(s)	453
DpnI	GATC	6 cut(s)	23, 151, 254, 663, 702, 708
DpnII	GATC	6 cut(s)	21, 149, 252, 661, 700, 706
EaeI	YGGCCR	2 cut(s)	244, 360
EagI	CGGCCG	1 cut(s)	360
EciI	GGCGGA	2 cut(s)	1128, 1145
Ecl136II	GAGCTC	1 cut(s)	432
EclXI	CGGCCG	1 cut(s)	360
Eco130I	CCWWGG	4 cut(s)	129, 135, 228, 1018
Eco147I	AGGCCT	2 cut(s)	134, 751
Eco24I	GRGCYC	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	3 cut(s)	381, 468, 1083
Eco47III	AGCGCT	1 cut(s)	1158
Eco52I	CGGCCG	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	432
Eco72I	CACGTG	1 cut(s)	270
Eco91I	GGTNACC	1 cut(s)	1013
EcoICRI	GAGCTC	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	1083
EcoO65I	GGTNACC	1 cut(s)	1013
EcoRII	CCWGG	2 cut(s)	571, 921
EcoT14I	CCWWGG	4 cut(s)	129, 135, 228, 1018
EcoT38I	GRGCYC	1 cut(s)	434
EgeI	GGCGCC	1 cut(s)	453
EheI	GGCGCC	1 cut(s)	453
ErhI	CCWWGG	4 cut(s)	129, 135, 228, 1018
FaeI	CATG	7 cut(s)	262, 448, 637, 820, 1022, 1036, 1244
FaqI	GGGAC	4 cut(s)	394, 769, 1096, 1248
FatI	CATG	7 cut(s)	258, 444, 633, 816, 1018, 1032, 1240
FauI	CCCGC	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	706
FokI	GGATG	5 cut(s)	14, 332, 394, 892, 1197
FriOI	GRGCYC	1 cut(s)	434
FspBI	CTAG	7 cut(s)	279, 305, 441, 681, 792, 900, 1260
GlaI	GCGC	9 cut(s)	109, 274, 453, 526, 554, 659, 1123, 1158, 1192
GsaI	CCCAGC	1 cut(s)	930
GsuI	CTGGAG	3 cut(s)	79, 151, 329
HaeII	RGCGCY	4 cut(s)	111, 455, 1160, 1194
HaeIII	GGCC	8 cut(s)	34, 134, 246, 353, 362, 751, 921, 1174
HhaI	GCGC	9 cut(s)	110, 275, 454, 527, 555, 660, 1124, 1159, 1193
Hin1I	GRCGYC	2 cut(s)	206, 452
Hin1II	CATG	7 cut(s)	262, 448, 637, 820, 1022, 1036, 1244
Hin6I	GCGC	9 cut(s)	108, 273, 452, 525, 553, 658, 1122, 1157, 1191
HinP1I	GCGC	9 cut(s)	108, 273, 452, 525, 553, 658, 1122, 1157, 1191
HincII	GTYRAC	3 cut(s)	210, 1009, 1265
HindII	GTYRAC	3 cut(s)	210, 1009, 1265
HinfI	GANTC	2 cut(s)	841, 862
HpaI	GTTAAC	1 cut(s)	1009
HphI	GGTGA	2 cut(s)	20, 1210
Hpy166II	GTNNAC	6 cut(s)	210, 235, 628, 990, 1009, 1265
Hpy188I	TCNGA	3 cut(s)	160, 319, 1219
Hpy188III	TCNNGA	8 cut(s)	56, 176, 618, 698, 704, 717, 974, 1033
Hpy8I	GTNNAC	6 cut(s)	210, 235, 628, 990, 1009, 1265
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	716, 741, 906
HpyCH4III	ACNGT	5 cut(s)	51, 104, 239, 1006, 1013
HpyCH4IV	ACGT	3 cut(s)	206, 269, 1267
HpyCH4V	TGCA	5 cut(s)	119, 823, 1027, 1075, 1226
HpyF3I	CTNAG	3 cut(s)	111, 425, 1181
HpySE526I	ACGT	3 cut(s)	206, 269, 1267
Hsp92I	GRCGYC	2 cut(s)	206, 452
Hsp92II	CATG	7 cut(s)	262, 448, 637, 820, 1022, 1036, 1244
HspAI	GCGC	9 cut(s)	108, 273, 452, 525, 553, 658, 1122, 1157, 1191
KasI	GGCGCC	1 cut(s)	451
Kpn2I	TCCGGA	1 cut(s)	617
KroI	GCCGGC	1 cut(s)	358
KroNI	GCCGGC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	706
KspAI	GTTAAC	1 cut(s)	1009
Kzo9I	GATC	6 cut(s)	21, 149, 252, 661, 700, 706
LmnI	GCTCC	7 cut(s)	196, 348, 429, 437, 544, 1048, 1198
LweI	GCATC	4 cut(s)	36, 536, 1213, 1219
MaeI	CTAG	7 cut(s)	279, 305, 441, 681, 792, 900, 1260
MaeII	ACGT	3 cut(s)	206, 269, 1267
MaeIII	GTNAC	2 cut(s)	902, 1013
MalI	GATC	6 cut(s)	23, 151, 254, 663, 702, 708
MboI	GATC	6 cut(s)	21, 149, 252, 661, 700, 706
MboII	GAAGA	5 cut(s)	86, 117, 585, 750, 956
MfeI	CAATTG	2 cut(s)	803, 1076
MflI	RGATCY	2 cut(s)	21, 252
MhlI	GDGCHC	5 cut(s)	312, 434, 833, 961, 1100
MluCI	AATT	7 cut(s)	37, 607, 803, 811, 1036, 1076, 1176
MluI	ACGCGT	1 cut(s)	1164
Mly113I	GGCGCC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	297, 618
MroI	TCCGGA	1 cut(s)	617
MroNI	GCCGGC	1 cut(s)	358
MseI	TTAA	1 cut(s)	1008
MslI	CAYNNNNRTG	4 cut(s)	230, 985, 1242, 1254
MspA1I	CMGCKG	4 cut(s)	83, 292, 474, 1185
MspR9I	CCNGG	3 cut(s)	379, 573, 923
MunI	CAATTG	2 cut(s)	803, 1076
Mva1269I	GAATGC	2 cut(s)	171, 1249
MvaI	CCWGG	2 cut(s)	573, 923
MvnI	CGCG	3 cut(s)	555, 660, 1166
NaeI	GCCGGC	1 cut(s)	360
NarI	GGCGCC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	379
NcoI	CCATGG	1 cut(s)	1018
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	6 cut(s)	21, 149, 252, 661, 700, 706
NgoMIV	GCCGGC	1 cut(s)	358
NlaIII	CATG	7 cut(s)	262, 448, 637, 820, 1022, 1036, 1244
NlaIV	GGNNCC	5 cut(s)	23, 254, 382, 453, 1084
NmeAIII	GCCGAG	1 cut(s)	379
NspI	RCATGY	3 cut(s)	262, 448, 820
OliI	CACNNNNGTG	2 cut(s)	230, 985
PaeI	GCATGC	1 cut(s)	262
PagI	TCATGA	1 cut(s)	1032
PceI	AGGCCT	2 cut(s)	134, 751
PciI	ACATGT	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	3 cut(s)	779, 845, 866
PctI	GAATGC	2 cut(s)	171, 1249
PdiI	GCCGGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	841, 862
PflMI	CCANNNNNTGG	1 cut(s)	336
PluTI	GGCGCC	1 cut(s)	455
PmaCI	CACGTG	1 cut(s)	270
PmlI	CACGTG	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	270
PpuMI	RGGWCCY	1 cut(s)	1083
PscI	ACATGT	1 cut(s)	816
Psp124BI	GAGCTC	1 cut(s)	434
Psp1406I	AACGTT	1 cut(s)	1267
Psp5II	RGGWCCY	1 cut(s)	1083
Psp6I	CCWGG	2 cut(s)	571, 921
PspCI	CACGTG	1 cut(s)	270
PspEI	GGTNACC	1 cut(s)	1013
PspFI	CCCAGC	1 cut(s)	926
PspGI	CCWGG	2 cut(s)	571, 921
PspN4I	GGNNCC	5 cut(s)	23, 254, 382, 453, 1084
PspPI	GGNCC	4 cut(s)	33, 381, 468, 1083
PspPPI	RGGWCCY	1 cut(s)	1083
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	21, 252
PvuII	CAGCTG	2 cut(s)	83, 292
RsaI	GTAC	1 cut(s)	859
RsaNI	GTAC	1 cut(s)	858
RseI	CAYNNNNRTG	4 cut(s)	230, 985, 1242, 1254
SacI	GAGCTC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	1008
Sau3AI	GATC	6 cut(s)	21, 149, 252, 661, 700, 706
Sau96I	GGNCC	4 cut(s)	33, 381, 468, 1083
SbfI	CCTGCAGG	1 cut(s)	121
ScrFI	CCNGG	3 cut(s)	379, 573, 923
SdaI	CCTGCAGG	1 cut(s)	121
SduI	GDGCHC	5 cut(s)	312, 434, 833, 961, 1100
SfaNI	GCATC	4 cut(s)	36, 536, 1213, 1219
SfcI	CTRYAG	1 cut(s)	117
SfiI	GGCCNNNNNGGCC	1 cut(s)	359
SfoI	GGCGCC	1 cut(s)	453
SinI	GGWCC	3 cut(s)	381, 468, 1083
SmiMI	CAYNNNNRTG	4 cut(s)	230, 985, 1242, 1254
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
SpeI	ACTAGT	2 cut(s)	680, 791
SphI	GCATGC	1 cut(s)	262
Sse8387I	CCTGCAGG	1 cut(s)	121
Sse9I	AATT	7 cut(s)	37, 607, 803, 811, 1036, 1076, 1176
SseBI	AGGCCT	2 cut(s)	134, 751
SspDI	GGCGCC	1 cut(s)	451
SspI	AATATT	1 cut(s)	1059
SspMI	CTAG	7 cut(s)	279, 305, 441, 681, 792, 900, 1260
SstI	GAGCTC	1 cut(s)	434
StuI	AGGCCT	2 cut(s)	134, 751
StyD4I	CCNGG	3 cut(s)	377, 571, 921
StyI	CCWWGG	4 cut(s)	129, 135, 228, 1018
TaaI	ACNGT	5 cut(s)	51, 104, 239, 1006, 1013
TaiI	ACGT	3 cut(s)	209, 272, 1270
TaqI	TCGA	4 cut(s)	57, 333, 827, 839
TasI	AATT	7 cut(s)	37, 607, 803, 811, 1036, 1076, 1176
TauI	GCSGC	7 cut(s)	249, 278, 477, 522, 525, 558, 1113
TfiI	GAWTC	2 cut(s)	841, 862
Tru1I	TTAA	1 cut(s)	1008
Tru9I	TTAA	1 cut(s)	1008
TscAI	CASTG	1 cut(s)	1105
TspDTI	ATGAA	4 cut(s)	27, 956, 1021, 1049
TspGWI	ACGGA	1 cut(s)	579
TspRI	CASTG	1 cut(s)	1105
Van91I	CCANNNNNTGG	1 cut(s)	336
VpaK11BI	GGWCC	3 cut(s)	381, 468, 1083
XapI	RAATTY	2 cut(s)	607, 1036
XceI	RCATGY	3 cut(s)	262, 448, 820
XspI	CTAG	7 cut(s)	279, 305, 441, 681, 792, 900, 1260
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.