Rh7CG041000
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003641
Physical Location & Seq
Reverse (-)
2728006 .. 2729631
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG041000.1

Sequence Viewer

Length: 939 bp
ATGCCGGCGCTCTGCGCGGCCAGGGTGTTCCAGCTCACTCGCGAGCTGGGACACAAGTCCGACGGCGAAACGATCGAGTGGCTCCTCCAGCAGGCCGAACCGGCCGTGATCGCCGCCACCGGAACCGGCACGATCCCAGCTAACTTCACTTCTCTAAACATCTCGCTAAGAAGCTCCGGTTCAAGCATGTCGGTGCCGTCGCAGCTCAGATCTTCTTATTACAGCCCCAATTTCTCGTCGTCCATACACCAGAGTAGTCAGAACCAGCGGCGGAATCTGTTTCAGGGTTTGGGGCTTTCCTCCTCGGACAGCTCGTCGACGCTGCTCAATTTCCAGACCAACACCATGCACTCTATGCTTCAGGCCAAGCAGGAACTACGTGATACGGTGTCGTTGGACTTATCCGAGGCGGCGTCAGCGGCGGAGGGAAGCATGGGAAGGAAGAGAAGGCCAGCCGAACAGGACTTGAATCAAATGGGAAGTGGGTATTTACTGCAGTCCAGCTCCGGAGCAATCCCGGCGAGCCACCACAGCCAGATTCCGGCCAATTTTTGGATGCTGGCTAATTCCAATAATCCAGCAGTGATGAGCGGAGACCCAATTTGGACATTTCCTTCAGTCAATAACAGTGGGTTGTACAGAGGCACCATGTCAGGCGGCTTGCATTTCATGAACTTCCCTACCCCGGTAGCGCTGATGCCAAGTCAGCAGCAGATGGGCGGCTCCGGCGGCGGTGGAGGCGGAGATAACGGCGGAAATGACGGTAGTGGTGGTGGAGATCATCACAACATGAGCGACGGGCAGCTGAACATGCTGGCCGGGCTCAACCCGTACCGGCACATGTCCTCGGAGTCACCACAGCAGCAGGCCAGTGGGTCCCACTCGCATCACGGCGGCGGCGGCGACGACCGGCACGATAGTACTAGTCACCACTCGTAG

Protein Analysis

312

Amino Acids

32.9

Weight (kDa)

6.17

Isoelectric Point (pI)

72.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 1 - 150 5.4e-22 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 193, 644
AccB7I CCANNNNNTGG 1 cut(s) 552
AccBSI CCGCTC 1 cut(s) 591
AccI GTMKAC 1 cut(s) 317
AccII CGCG 2 cut(s) 17, 42
AccIII TCCGGA 1 cut(s) 506
AclWI GGATC 1 cut(s) 127
AcoI YGGCCR 4 cut(s) 18, 102, 543, 816
AcuI CTGAAG 2 cut(s) 344, 600
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 3 cut(s) 638, 833, 922
AfeI AGCGCT 1 cut(s) 693
AfiI CCNNNNNNNGG 4 cut(s) 91, 541, 552, 685
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 2 cut(s) 183, 469
AhdI GACNNNNNGTC 1 cut(s) 313
AhlI ACTAGT 1 cut(s) 923
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 8 cut(s) 34, 46, 140, 174, 205, 312, 504, 805
AluI AGCT 8 cut(s) 34, 46, 140, 174, 205, 312, 504, 805
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 1 cut(s) 127
Aor13HI TCCGGA 1 cut(s) 506
Aor51HI AGCGCT 1 cut(s) 693
AoxI GGCC 8 cut(s) 18, 93, 102, 363, 449, 543, 816, 867
ApeKI GCWGC 5 cut(s) 202, 322, 709, 802, 862
AspLEI GCGC 3 cut(s) 10, 17, 694
AspS9I GGNCC 1 cut(s) 876
AsuC2I CCSGG 3 cut(s) 518, 686, 820
AsuHPI GGTGA 2 cut(s) 846, 920
AvaII GGWCC 1 cut(s) 876
BanI GGYRCC 2 cut(s) 193, 644
BanII GRGCYC 1 cut(s) 825
BbvI GCAGC 5 cut(s) 214, 309, 721, 814, 874
BccI CCATC 1 cut(s) 709
BceAI ACGGC 5 cut(s) 79, 89, 181, 766, 907
BciT130I CCWGG 1 cut(s) 22
BcnI CCSGG 3 cut(s) 518, 686, 820
BcoDI GTCTC 1 cut(s) 588
BcuI ACTAGT 1 cut(s) 923
BfaI CTAG 1 cut(s) 924
BfmI CTRYAG 1 cut(s) 494
BfoI RGCGCY 2 cut(s) 11, 695
BglI GCCNNNNNGGC 1 cut(s) 101
BglII AGATCT 1 cut(s) 209
BmcAI AGTACT 1 cut(s) 922
Bme1390I CCNGG 4 cut(s) 22, 518, 686, 820
Bme18I GGWCC 1 cut(s) 876
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 876
BmiI GGNNCC 7 cut(s) 83, 124, 195, 646, 724, 877, 878
BmrFI CCNGG 4 cut(s) 22, 518, 686, 820
BmsI GCATC 3 cut(s) 546, 687, 895
BoxI GACNNNNGTC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 71
BpuMI CCSGG 3 cut(s) 518, 686, 820
BsaAI YACGTR 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 5 cut(s) 21, 303, 405, 684, 846
BsaWI WCCGGW 3 cut(s) 119, 176, 506
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 541, 552, 685
Bse118I RCCGGY 5 cut(s) 4, 100, 125, 834, 909
Bse1I ACTGG 1 cut(s) 870
BseAI TCCGGA 1 cut(s) 506
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 5 cut(s) 21, 303, 405, 684, 846
BseGI GGATG 1 cut(s) 561
BseLI CCNNNNNNNGG 4 cut(s) 91, 541, 552, 685
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 870
BseRI GAGGAG 2 cut(s) 74, 292
BseX3I CGGCCG 1 cut(s) 102
BseXI GCAGC 5 cut(s) 214, 309, 721, 814, 874
BseYI CCCAGC 2 cut(s) 46, 136
Bsh1236I CGCG 2 cut(s) 17, 42
Bsh1285I CGRYCG 3 cut(s) 75, 105, 910
BshFI GGCC 8 cut(s) 20, 95, 104, 365, 451, 545, 818, 869
BshNI GGYRCC 2 cut(s) 193, 644
BsiEI CGRYCG 3 cut(s) 75, 105, 910
BslFI GGGAC 2 cut(s) 63, 862
BslI CCNNNNNNNGG 4 cut(s) 91, 541, 552, 685
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 2 cut(s) 63, 862
BsnI GGCC 8 cut(s) 20, 95, 104, 365, 451, 545, 818, 869
Bso31I GGTCTC 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 825
Bsp13I TCCGGA 1 cut(s) 506
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 5 cut(s) 72, 108, 132, 209, 778
Bsp68I TCGCGA 1 cut(s) 42
BspANI GGCC 8 cut(s) 20, 95, 104, 365, 451, 545, 818, 869
BspCNI CTCAG 1 cut(s) 219
BspEI TCCGGA 1 cut(s) 506
BspFNI CGCG 2 cut(s) 17, 42
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 7 cut(s) 83, 124, 195, 646, 724, 877, 878
BspMAI CTGCAG 1 cut(s) 498
BspPI GGATC 1 cut(s) 127
BspT107I GGYRCC 2 cut(s) 193, 644
BspTNI GGTCTC 1 cut(s) 588
BsrBI CCGCTC 1 cut(s) 591
BsrFI RCCGGY 5 cut(s) 4, 100, 125, 834, 909
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 870
BssAI RCCGGY 5 cut(s) 4, 100, 125, 834, 909
BssECI CCNNGG 5 cut(s) 21, 303, 405, 684, 846
BssMI GATC 5 cut(s) 72, 108, 132, 209, 778
BssNI GRCGYC 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 3 cut(s) 388, 629, 764
Bst6I CTCTTC 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 413
BstAPI GCANNNNNTGC 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 9 cut(s) 6, 44, 93, 453, 523, 561, 662, 816, 867
BstDEI CTNAG 2 cut(s) 167, 206
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 561
BstFNI CGCG 2 cut(s) 17, 42
BstH2I RGCGCY 2 cut(s) 11, 695
BstHHI GCGC 3 cut(s) 10, 17, 694
BstKTI GATC 5 cut(s) 75, 111, 135, 212, 781
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 5 cut(s) 72, 108, 132, 209, 778
BstMCI CGRYCG 3 cut(s) 75, 105, 910
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 3 cut(s) 190, 814, 844
BstPAI GACNNNNGTC 1 cut(s) 55
BstSCI CCNGG 4 cut(s) 20, 516, 684, 818
BstSFI CTRYAG 1 cut(s) 494
BstUI CGCG 2 cut(s) 17, 42
BstV1I GCAGC 5 cut(s) 214, 309, 721, 814, 874
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BstZI CGGCCG 1 cut(s) 102
BsuRI GGCC 8 cut(s) 20, 95, 104, 365, 451, 545, 818, 869
BtsCI GGATG 1 cut(s) 561
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 588, 634, 877
BtuMI TCGCGA 1 cut(s) 42
Cac8I GCNNGC 9 cut(s) 6, 44, 93, 453, 523, 561, 662, 816, 867
CciI TCATGA 1 cut(s) 669
CfoI GCGC 3 cut(s) 10, 17, 694
Cfr10I RCCGGY 5 cut(s) 4, 100, 125, 834, 909
Cfr13I GGNCC 1 cut(s) 876
CseI GACGC 2 cut(s) 328, 402
Csp6I GTAC 3 cut(s) 637, 832, 921
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviAII CATG 8 cut(s) 187, 346, 433, 649, 670, 790, 811, 841
CviQI GTAC 3 cut(s) 637, 832, 921
DdeI CTNAG 2 cut(s) 167, 206
DpnI GATC 5 cut(s) 74, 110, 134, 211, 780
DpnII GATC 5 cut(s) 72, 108, 132, 209, 778
DriI GACNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 4 cut(s) 18, 102, 543, 816
EagI CGGCCG 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 437
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 437
EciI GGCGGA 4 cut(s) 286, 437, 756, 768
EclXI CGGCCG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 825
Eco31I GGTCTC 1 cut(s) 588
Eco47I GGWCC 1 cut(s) 876
Eco47III AGCGCT 1 cut(s) 693
Eco52I CGGCCG 1 cut(s) 102
Eco57I CTGAAG 2 cut(s) 344, 600
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 876
EcoRII CCWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 825
FaeI CATG 8 cut(s) 190, 349, 436, 652, 673, 793, 814, 844
FaqI GGGAC 2 cut(s) 63, 862
FatI CATG 8 cut(s) 186, 345, 432, 648, 669, 789, 810, 840
FblI GTMKAC 1 cut(s) 317
FokI GGATG 1 cut(s) 568
FriOI GRGCYC 1 cut(s) 825
FspBI CTAG 1 cut(s) 924
GlaI GCGC 3 cut(s) 9, 16, 693
GsaI CCCAGC 2 cut(s) 50, 140
GsuI CTGGAG 1 cut(s) 71
HaeII RGCGCY 2 cut(s) 11, 695
HaeIII GGCC 8 cut(s) 20, 95, 104, 365, 451, 545, 818, 869
HgaI GACGC 2 cut(s) 328, 402
HhaI GCGC 3 cut(s) 10, 17, 694
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 8 cut(s) 190, 349, 436, 652, 673, 793, 814, 844
Hin6I GCGC 3 cut(s) 8, 15, 692
HinP1I GCGC 3 cut(s) 8, 15, 692
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 4 cut(s) 274, 469, 538, 851
HphI GGTGA 2 cut(s) 846, 920
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 6 cut(s) 61, 209, 261, 307, 406, 850
Hpy188III TCNNGA 4 cut(s) 41, 334, 507, 670
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 7 cut(s) 65, 202, 241, 319, 322, 800, 908
HpyAV CCTTC 3 cut(s) 432, 441, 624
HpyCH4III ACNGT 3 cut(s) 388, 629, 764
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 3 cut(s) 349, 496, 664
HpyF3I CTNAG 2 cut(s) 167, 206
HpySE526I ACGT 1 cut(s) 379
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 8 cut(s) 190, 349, 436, 652, 673, 793, 814, 844
HspAI GCGC 3 cut(s) 8, 15, 692
KflI GGGWCCC 1 cut(s) 876
Kpn2I TCCGGA 1 cut(s) 506
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 5 cut(s) 72, 108, 132, 209, 778
LmnI GCTCC 5 cut(s) 87, 179, 509, 509, 728
Lsp1109I GCAGC 5 cut(s) 214, 309, 721, 814, 874
LweI GCATC 3 cut(s) 546, 687, 895
MaeI CTAG 1 cut(s) 924
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 852, 926
MalI GATC 5 cut(s) 74, 110, 134, 211, 780
MbiI CCGCTC 1 cut(s) 591
MboI GATC 5 cut(s) 72, 108, 132, 209, 778
MboII GAAGA 2 cut(s) 204, 454
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 825
MluCI AATT 5 cut(s) 229, 328, 547, 565, 600
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 2 cut(s) 84, 375
MnlI CCTC 8 cut(s) 95, 310, 313, 400, 418, 635, 731, 856
MroI TCCGGA 1 cut(s) 506
MroNI GCCGGC 1 cut(s) 4
MslI CAYNNNNRTG 1 cut(s) 191
MspA1I CMGCKG 3 cut(s) 268, 419, 805
MspR9I CCNGG 4 cut(s) 22, 518, 686, 820
MvaI CCWGG 1 cut(s) 22
MvnI CGCG 2 cut(s) 17, 42
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 3 cut(s) 518, 686, 820
NdeII GATC 5 cut(s) 72, 108, 132, 209, 778
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 8 cut(s) 190, 349, 436, 652, 673, 793, 814, 844
NlaIV GGNNCC 7 cut(s) 83, 124, 195, 646, 724, 877, 878
NmuCI GTSAC 2 cut(s) 852, 926
NruI TCGCGA 1 cut(s) 42
NspI RCATGY 3 cut(s) 190, 814, 844
PagI TCATGA 1 cut(s) 669
PciI ACATGT 1 cut(s) 840
PcsI WCGNNNNNNNCGW 2 cut(s) 311, 912
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 274, 469, 538
PflMI CCANNNNNTGG 1 cut(s) 552
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 1 cut(s) 859
PpsI GAGTC 1 cut(s) 859
Ppu21I YACGTR 1 cut(s) 380
PpuMI RGGWCCY 1 cut(s) 876
PscI ACATGT 1 cut(s) 840
PshAI GACNNNNGTC 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 876
Psp6I CCWGG 1 cut(s) 20
PspFI CCCAGC 2 cut(s) 46, 136
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 7 cut(s) 83, 124, 195, 646, 724, 877, 878
PspPI GGNCC 1 cut(s) 876
PspPPI RGGWCCY 1 cut(s) 876
PstI CTGCAG 1 cut(s) 498
PsuI RGATCY 1 cut(s) 209
PvuI CGATCG 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 805
RruI TCGCGA 1 cut(s) 42
RsaI GTAC 3 cut(s) 638, 833, 922
RsaNI GTAC 3 cut(s) 637, 832, 921
RseI CAYNNNNRTG 1 cut(s) 191
SalI GTCGAC 1 cut(s) 316
Sau3AI GATC 5 cut(s) 72, 108, 132, 209, 778
Sau96I GGNCC 1 cut(s) 876
ScaI AGTACT 1 cut(s) 922
SchI GAGTC 1 cut(s) 860
ScrFI CCNGG 4 cut(s) 22, 518, 686, 820
SduI GDGCHC 1 cut(s) 825
SetI ASST 9 cut(s) 36, 48, 142, 176, 207, 314, 382, 506, 807
SfaNI GCATC 3 cut(s) 546, 687, 895
SfcI CTRYAG 1 cut(s) 494
SfiI GGCCNNNNNGGCC 1 cut(s) 101
SgrDI CGTCGACG 1 cut(s) 316
SinI GGWCC 1 cut(s) 876
SmiMI CAYNNNNRTG 1 cut(s) 191
SpeI ACTAGT 1 cut(s) 923
Sse9I AATT 5 cut(s) 229, 328, 547, 565, 600
SspMI CTAG 1 cut(s) 924
StyD4I CCNGG 4 cut(s) 20, 516, 684, 818
TaaI ACNGT 3 cut(s) 388, 629, 764
TaiI ACGT 1 cut(s) 382
TaqI TCGA 2 cut(s) 75, 317
TasI AATT 5 cut(s) 229, 328, 547, 565, 600
TatI WGTACW 2 cut(s) 636, 920
TfiI GAWTC 3 cut(s) 274, 469, 538
TscAI CASTG 3 cut(s) 588, 634, 877
TseFI GTSAC 2 cut(s) 852, 926
TseI GCWGC 5 cut(s) 202, 322, 709, 802, 862
Tsp45I GTSAC 2 cut(s) 852, 926
TspDTI ATGAA 2 cut(s) 658, 686
TspRI CASTG 3 cut(s) 588, 634, 877
Van91I CCANNNNNTGG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 876
XagI CCTNNNNNAGG 1 cut(s) 89
XceI RCATGY 3 cut(s) 190, 814, 844
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 1 cut(s) 924
ZrmI AGTACT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.