Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69690 |
| fragaria_vesca | FvH4_4g31520 FvH4_5g15150 |
| malus_domestica | MD06G1191800.v1.1 MD13G1073500.v1.1 MD14G1198200.v1.1 MD16G1074800.v1.1 |
| prunus_persica | Prupe.1G272500_v2.0.a1 Prupe.5G191200_v2.0.a1 |
| pyrus_communis | pycom06g16990 pycom13g06580 pycom14g16460 pycom16g06480 |
| rosa_chinensis | RchiOBHm_Chr4g0440011 RchiOBHm_Chr7g0181021 |
| rosa_laevigata | RLG00000005218 RLG00000006215 |
| rosa_multiflora | Rmu_sc0006000.1_g000009 Rmu_sc0007079.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00272330 Rroxscaffold_5G00380970 |
| rosa_rugosa | Rorug04G0323300 Rorug06G0438600 |
| rosa_samantha | Rh4AG295500 Rh4AG374300 Rh4BG301900 Rh4BG386600 Rh4CG401100 Rh4DG380900 Rh7AG039800 Rh7BG039200 Rh7CG041000 Rh7DG039400 |
| rosa_wichuraiana | Rw4G032020 Rw7G003280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 368, 433 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 318, 1208 |
| AccII | CGCG | 2 cut(s) | 546, 1166 |
| AclWI | GGATC | 5 cut(s) | 19, 32, 229, 242, 1105 |
| AcoI | YGGCCR | 3 cut(s) | 246, 1074, 1172 |
| AcsI | RAATTY | 2 cut(s) | 616, 1051 |
| AcvI | CACGTG | 1 cut(s) | 252 |
| AcyI | GRCGYC | 1 cut(s) | 434 |
| AdeI | CACNNNGTG | 1 cut(s) | 1208 |
| AfaI | GTAC | 2 cut(s) | 862, 1169 |
| AflIII | ACRYGT | 3 cut(s) | 251, 816, 1164 |
| AgsI | TTSAA | 3 cut(s) | 484, 616, 622 |
| AjnI | CCWGG | 2 cut(s) | 94, 967 |
| AleI | CACNNNNGTG | 3 cut(s) | 212, 1113, 1143 |
| AluBI | AGCT | 8 cut(s) | 14, 274, 286, 414, 509, 520, 591, 813 |
| AluI | AGCT | 8 cut(s) | 14, 274, 286, 414, 509, 520, 591, 813 |
| Alw21I | GWGCWC | 2 cut(s) | 416, 593 |
| Alw26I | GTCTC | 2 cut(s) | 93, 302 |
| AlwI | GGATC | 5 cut(s) | 19, 32, 229, 242, 1105 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 509 |
| Ama87I | CYCGRG | 2 cut(s) | 103, 1181 |
| AoxI | GGCC | 9 cut(s) | 35, 226, 246, 333, 452, 699, 728, 1074, 1172 |
| ApeKI | GCWGC | 9 cut(s) | 30, 148, 353, 406, 503, 506, 509, 517, 909 |
| ApoI | RAATTY | 2 cut(s) | 616, 1051 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 330, 362 |
| AseI | ATTAAT | 2 cut(s) | 948, 975 |
| AspLEI | GCGC | 5 cut(s) | 94, 436, 546, 707, 1159 |
| AspS9I | GGNCC | 3 cut(s) | 36, 186, 363 |
| AsuC2I | CCSGG | 5 cut(s) | 104, 105, 126, 564, 1206 |
| AsuHPI | GGTGA | 4 cut(s) | 130, 317, 379, 689 |
| AvaI | CYCGRG | 2 cut(s) | 103, 1181 |
| AvaII | GGWCC | 2 cut(s) | 186, 363 |
| BaeGI | GKGCMC | 1 cut(s) | 294 |
| BamHI | GGATCC | 2 cut(s) | 24, 234 |
| BanI | GGYRCC | 2 cut(s) | 368, 433 |
| BanII | GRGCYC | 2 cut(s) | 416, 593 |
| BauI | CACGAG | 1 cut(s) | 277 |
| BbrPI | CACGTG | 1 cut(s) | 252 |
| BbsI | GAAGAC | 2 cut(s) | 744, 1011 |
| Bbv12I | GWGCWC | 2 cut(s) | 416, 593 |
| BbvI | GCAGC | 9 cut(s) | 17, 160, 365, 393, 496, 515, 518, 529, 921 |
| BccI | CCATC | 3 cut(s) | 790, 877, 1144 |
| BceAI | ACGGC | 4 cut(s) | 178, 329, 421, 1126 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 495, 529 |
| BciT130I | CCWGG | 2 cut(s) | 96, 969 |
| BclI | TGATCA | 2 cut(s) | 3, 658 |
| BcnI | CCSGG | 5 cut(s) | 104, 105, 126, 564, 1206 |
| BcoDI | GTCTC | 2 cut(s) | 93, 302 |
| BfaI | CTAG | 7 cut(s) | 59, 261, 287, 423, 900, 1086, 1272 |
| BfmI | CTRYAG | 1 cut(s) | 31 |
| BfoI | RGCGCY | 4 cut(s) | 95, 437, 708, 1160 |
| Bme1390I | CCNGG | 7 cut(s) | 96, 104, 105, 126, 564, 969, 1206 |
| Bme18I | GGWCC | 2 cut(s) | 186, 363 |
| BmeT110I | CYCGRG | 2 cut(s) | 103, 1181 |
| BmgT120I | GGNCC | 3 cut(s) | 36, 186, 363 |
| BmiI | GGNNCC | 8 cut(s) | 26, 109, 130, 236, 364, 370, 435, 1200 |
| BmrFI | CCNGG | 7 cut(s) | 96, 104, 105, 126, 564, 969, 1206 |
| BpiI | GAAGAC | 2 cut(s) | 744, 1011 |
| BpmI | CTGGAG | 1 cut(s) | 311 |
| BpuEI | CTTGAG | 1 cut(s) | 469 |
| BpuMI | CCSGG | 5 cut(s) | 104, 105, 126, 564, 1206 |
| BsaAI | YACGTR | 2 cut(s) | 252, 656 |
| BsaHI | GRCGYC | 1 cut(s) | 434 |
| BsaI | GGTCTC | 2 cut(s) | 93, 302 |
| BsaJI | CCNNGG | 6 cut(s) | 103, 195, 562, 687, 708, 1234 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 374, 404, 521, 551 |
| Bse118I | RCCGGY | 3 cut(s) | 244, 365, 1170 |
| Bse3DI | GCAATG | 1 cut(s) | 1273 |
| BseBI | CCWGG | 2 cut(s) | 96, 969 |
| BseDI | CCNNGG | 6 cut(s) | 103, 195, 562, 687, 708, 1234 |
| BseGI | GGATG | 2 cut(s) | 81, 888 |
| BseMI | GCAATG | 1 cut(s) | 1273 |
| BseMII | CTCAG | 1 cut(s) | 576 |
| BseRI | GAGGAG | 3 cut(s) | 121, 165, 1095 |
| BseSI | GKGCMC | 1 cut(s) | 294 |
| BseX3I | CGGCCG | 1 cut(s) | 1172 |
| BseXI | GCAGC | 9 cut(s) | 17, 160, 365, 393, 496, 515, 518, 529, 921 |
| BseYI | CCCAGC | 1 cut(s) | 540 |
| BsgI | GTGCAG | 1 cut(s) | 522 |
| Bsh1236I | CGCG | 2 cut(s) | 546, 1166 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1175 |
| BshFI | GGCC | 9 cut(s) | 37, 228, 248, 335, 454, 701, 730, 1076, 1174 |
| BshNI | GGYRCC | 2 cut(s) | 368, 433 |
| BsiEI | CGRYCG | 1 cut(s) | 1175 |
| BsiHKAI | GWGCWC | 2 cut(s) | 416, 593 |
| BsiHKCI | CYCGRG | 2 cut(s) | 103, 1181 |
| BslFI | GGGAC | 2 cut(s) | 376, 1263 |
| BsmAI | GTCTC | 2 cut(s) | 93, 302 |
| BsmFI | GGGAC | 2 cut(s) | 376, 1263 |
| BsmI | GAATGC | 1 cut(s) | 1225 |
| BsnI | GGCC | 9 cut(s) | 37, 228, 248, 335, 454, 701, 730, 1076, 1174 |
| Bso31I | GGTCTC | 2 cut(s) | 93, 302 |
| BsoBI | CYCGRG | 2 cut(s) | 103, 1181 |
| Bsp1286I | GDGCHC | 3 cut(s) | 294, 416, 593 |
| Bsp143I | GATC | 6 cut(s) | 3, 24, 234, 658, 1097, 1255 |
| Bsp19I | CCATGG | 2 cut(s) | 708, 1234 |
| BspANI | GGCC | 9 cut(s) | 37, 228, 248, 335, 454, 701, 730, 1076, 1174 |
| BspCNI | CTCAG | 1 cut(s) | 577 |
| BspFNI | CGCG | 2 cut(s) | 546, 1166 |
| BspHI | TCATGA | 1 cut(s) | 474 |
| BspLI | GGNNCC | 8 cut(s) | 26, 109, 130, 236, 364, 370, 435, 1200 |
| BspMAI | CTGCAG | 1 cut(s) | 35 |
| BspPI | GGATC | 5 cut(s) | 19, 32, 229, 242, 1105 |
| BspT107I | GGYRCC | 2 cut(s) | 368, 433 |
| BspTNI | GGTCTC | 2 cut(s) | 93, 302 |
| BsrDI | GCAATG | 1 cut(s) | 1273 |
| BsrFI | RCCGGY | 3 cut(s) | 244, 365, 1170 |
| BssAI | RCCGGY | 3 cut(s) | 244, 365, 1170 |
| BssECI | CCNNGG | 6 cut(s) | 103, 195, 562, 687, 708, 1234 |
| BssMI | GATC | 6 cut(s) | 3, 24, 234, 658, 1097, 1255 |
| BssNI | GRCGYC | 1 cut(s) | 434 |
| BssSI | CACGAG | 1 cut(s) | 277 |
| BssT1I | CCWWGG | 3 cut(s) | 195, 708, 1234 |
| Bst2BI | CACGAG | 1 cut(s) | 277 |
| Bst2UI | CCWGG | 2 cut(s) | 96, 969 |
| Bst4CI | ACNGT | 1 cut(s) | 305 |
| Bst6I | CTCTTC | 1 cut(s) | 176 |
| BstACI | GRCGYC | 1 cut(s) | 434 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 509, 1039 |
| BstBAI | YACGTR | 2 cut(s) | 252, 656 |
| BstC8I | GCNNGC | 6 cut(s) | 35, 246, 333, 703, 832, 1031 |
| BstDEI | CTNAG | 1 cut(s) | 585 |
| BstDSI | CCRYGG | 2 cut(s) | 708, 1234 |
| BstF5I | GGATG | 2 cut(s) | 81, 888 |
| BstFNI | CGCG | 2 cut(s) | 546, 1166 |
| BstH2I | RGCGCY | 4 cut(s) | 95, 437, 708, 1160 |
| BstHHI | GCGC | 5 cut(s) | 94, 436, 546, 707, 1159 |
| BstKTI | GATC | 6 cut(s) | 6, 27, 237, 661, 1100, 1258 |
| BstMAI | GTCTC | 2 cut(s) | 93, 302 |
| BstMBI | GATC | 6 cut(s) | 3, 24, 234, 658, 1097, 1255 |
| BstMCI | CGRYCG | 1 cut(s) | 1175 |
| BstNI | CCWGG | 2 cut(s) | 96, 969 |
| BstNSI | RCATGY | 2 cut(s) | 430, 820 |
| BstSCI | CCNGG | 7 cut(s) | 94, 102, 103, 124, 562, 967, 1204 |
| BstSFI | CTRYAG | 1 cut(s) | 31 |
| BstSLI | GKGCMC | 1 cut(s) | 294 |
| BstUI | CGCG | 2 cut(s) | 546, 1166 |
| BstV1I | GCAGC | 9 cut(s) | 17, 160, 365, 393, 496, 515, 518, 529, 921 |
| BstV2I | GAAGAC | 2 cut(s) | 744, 1011 |
| BstX2I | RGATCY | 2 cut(s) | 24, 234 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 496, 709 |
| BstYI | RGATCY | 2 cut(s) | 24, 234 |
| BstZI | CGGCCG | 1 cut(s) | 1172 |
| BsuRI | GGCC | 9 cut(s) | 37, 228, 248, 335, 454, 701, 730, 1076, 1174 |
| BtgI | CCRYGG | 2 cut(s) | 708, 1234 |
| BtgZI | GCGATG | 1 cut(s) | 334 |
| BtsCI | GGATG | 2 cut(s) | 81, 888 |
| Cac8I | GCNNGC | 6 cut(s) | 35, 246, 333, 703, 832, 1031 |
| CaiI | CAGNNNCTG | 1 cut(s) | 509 |
| CciI | TCATGA | 1 cut(s) | 474 |
| CfoI | GCGC | 5 cut(s) | 94, 436, 546, 707, 1159 |
| Cfr10I | RCCGGY | 3 cut(s) | 244, 365, 1170 |
| Cfr13I | GGNCC | 3 cut(s) | 36, 186, 363 |
| Cfr9I | CCCGGG | 1 cut(s) | 103 |
| CseI | GACGC | 1 cut(s) | 501 |
| Csp6I | GTAC | 2 cut(s) | 861, 1168 |
| CviQI | GTAC | 2 cut(s) | 861, 1168 |
| DdeI | CTNAG | 1 cut(s) | 585 |
| DinI | GGCGCC | 1 cut(s) | 435 |
| DpnI | GATC | 6 cut(s) | 5, 26, 236, 660, 1099, 1257 |
| DpnII | GATC | 6 cut(s) | 3, 24, 234, 658, 1097, 1255 |
| DraIII | CACNNNGTG | 1 cut(s) | 1208 |
| EaeI | YGGCCR | 3 cut(s) | 246, 1074, 1172 |
| EagI | CGGCCG | 1 cut(s) | 1172 |
| Eam1104I | CTCTTC | 1 cut(s) | 176 |
| EarI | CTCTTC | 1 cut(s) | 176 |
| EciI | GGCGGA | 1 cut(s) | 1211 |
| Ecl136II | GAGCTC | 2 cut(s) | 414, 591 |
| EclXI | CGGCCG | 1 cut(s) | 1172 |
| Eco130I | CCWWGG | 3 cut(s) | 195, 708, 1234 |
| Eco24I | GRGCYC | 2 cut(s) | 416, 593 |
| Eco31I | GGTCTC | 2 cut(s) | 93, 302 |
| Eco32I | GATATC | 1 cut(s) | 804 |
| Eco47I | GGWCC | 2 cut(s) | 186, 363 |
| Eco52I | CGGCCG | 1 cut(s) | 1172 |
| Eco53kI | GAGCTC | 2 cut(s) | 414, 591 |
| Eco72I | CACGTG | 1 cut(s) | 252 |
| Eco88I | CYCGRG | 2 cut(s) | 103, 1181 |
| EcoICRI | GAGCTC | 2 cut(s) | 414, 591 |
| EcoO109I | RGGNCCY | 1 cut(s) | 186 |
| EcoRII | CCWGG | 2 cut(s) | 94, 967 |
| EcoRV | GATATC | 1 cut(s) | 804 |
| EcoT14I | CCWWGG | 3 cut(s) | 195, 708, 1234 |
| EcoT38I | GRGCYC | 2 cut(s) | 416, 593 |
| EgeI | GGCGCC | 1 cut(s) | 435 |
| EheI | GGCGCC | 1 cut(s) | 435 |
| ErhI | CCWWGG | 3 cut(s) | 195, 708, 1234 |
| FaqI | GGGAC | 2 cut(s) | 376, 1263 |
| FauI | CCCGC | 3 cut(s) | 349, 385, 1022 |
| FbaI | TGATCA | 2 cut(s) | 3, 658 |
| FokI | GGATG | 2 cut(s) | 68, 895 |
| FriOI | GRGCYC | 2 cut(s) | 416, 593 |
| FspBI | CTAG | 7 cut(s) | 59, 261, 287, 423, 900, 1086, 1272 |
| GlaI | GCGC | 5 cut(s) | 93, 435, 545, 706, 1158 |
| GsaI | CCCAGC | 1 cut(s) | 544 |
| GsuI | CTGGAG | 1 cut(s) | 311 |
| HaeII | RGCGCY | 4 cut(s) | 95, 437, 708, 1160 |
| HaeIII | GGCC | 9 cut(s) | 37, 228, 248, 335, 454, 701, 730, 1076, 1174 |
| HgaI | GACGC | 1 cut(s) | 501 |
| HhaI | GCGC | 5 cut(s) | 94, 436, 546, 707, 1159 |
| Hin1I | GRCGYC | 1 cut(s) | 434 |
| Hin6I | GCGC | 5 cut(s) | 92, 434, 544, 705, 1157 |
| HinP1I | GCGC | 5 cut(s) | 92, 434, 544, 705, 1157 |
| HinfI | GANTC | 2 cut(s) | 853, 1177 |
| HphI | GGTGA | 4 cut(s) | 130, 317, 379, 689 |
| Hpy166II | GTNNAC | 2 cut(s) | 217, 960 |
| Hpy188I | TCNGA | 5 cut(s) | 180, 301, 586, 688, 795 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 277, 475, 1259 |
| Hpy8I | GTNNAC | 2 cut(s) | 217, 960 |
| Hpy99I | CGWCG | 6 cut(s) | 305, 442, 517, 601, 604, 760 |
| HpyAV | CCTTC | 1 cut(s) | 708 |
| HpyCH4III | ACNGT | 1 cut(s) | 305 |
| HpyCH4IV | ACGT | 2 cut(s) | 251, 655 |
| HpyCH4V | TGCA | 4 cut(s) | 33, 503, 823, 1042 |
| HpyF3I | CTNAG | 1 cut(s) | 585 |
| HpySE526I | ACGT | 2 cut(s) | 251, 655 |
| Hsp92I | GRCGYC | 1 cut(s) | 434 |
| HspAI | GCGC | 5 cut(s) | 92, 434, 544, 705, 1157 |
| KasI | GGCGCC | 1 cut(s) | 433 |
| KroI | GCCGGC | 1 cut(s) | 244 |
| KroNI | GCCGGC | 1 cut(s) | 246 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 658 |
| Kzo9I | GATC | 6 cut(s) | 3, 24, 234, 658, 1097, 1255 |
| LmnI | GCTCC | 9 cut(s) | 134, 283, 411, 419, 596, 733, 1063, 1198, 1238 |
| Lsp1109I | GCAGC | 9 cut(s) | 17, 160, 365, 393, 496, 515, 518, 529, 921 |
| MaeI | CTAG | 7 cut(s) | 59, 261, 287, 423, 900, 1086, 1272 |
| MaeII | ACGT | 2 cut(s) | 251, 655 |
| MaeIII | GTNAC | 2 cut(s) | 651, 1259 |
| MalI | GATC | 6 cut(s) | 5, 26, 236, 660, 1099, 1257 |
| MboI | GATC | 6 cut(s) | 3, 24, 234, 658, 1097, 1255 |
| MboII | GAAGA | 3 cut(s) | 193, 744, 1011 |
| MfeI | CAATTG | 1 cut(s) | 1125 |
| MflI | RGATCY | 2 cut(s) | 24, 234 |
| MhlI | GDGCHC | 3 cut(s) | 294, 416, 593 |
| MluI | ACGCGT | 1 cut(s) | 1164 |
| Mly113I | GGCGCC | 1 cut(s) | 434 |
| MlyI | GAGTC | 1 cut(s) | 862 |
| MmeI | TCCRAC | 3 cut(s) | 135, 324, 615 |
| MroNI | GCCGGC | 1 cut(s) | 244 |
| MseI | TTAA | 3 cut(s) | 948, 975, 987 |
| MslI | CAYNNNNRTG | 5 cut(s) | 212, 933, 1113, 1143, 1257 |
| MspA1I | CMGCKG | 4 cut(s) | 30, 509, 520, 912 |
| MspR9I | CCNGG | 7 cut(s) | 96, 104, 105, 126, 564, 969, 1206 |
| MunI | CAATTG | 1 cut(s) | 1125 |
| Mva1269I | GAATGC | 1 cut(s) | 1225 |
| MvaI | CCWGG | 2 cut(s) | 96, 969 |
| MvnI | CGCG | 2 cut(s) | 546, 1166 |
| NaeI | GCCGGC | 1 cut(s) | 246 |
| NarI | GGCGCC | 1 cut(s) | 434 |
| NciI | CCSGG | 5 cut(s) | 104, 105, 126, 564, 1206 |
| NcoI | CCATGG | 2 cut(s) | 708, 1234 |
| NdeII | GATC | 6 cut(s) | 3, 24, 234, 658, 1097, 1255 |
| NgoMIV | GCCGGC | 1 cut(s) | 244 |
| NlaIV | GGNNCC | 8 cut(s) | 26, 109, 130, 236, 364, 370, 435, 1200 |
| NmuCI | GTSAC | 1 cut(s) | 1259 |
| NspI | RCATGY | 2 cut(s) | 430, 820 |
| OliI | CACNNNNGTG | 3 cut(s) | 212, 1113, 1143 |
| PagI | TCATGA | 1 cut(s) | 474 |
| PciI | ACATGT | 1 cut(s) | 816 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 755, 761 |
| PctI | GAATGC | 1 cut(s) | 1225 |
| PdiI | GCCGGC | 1 cut(s) | 246 |
| PfeI | GAWTC | 1 cut(s) | 1177 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 318, 1208 |
| PleI | GAGTC | 1 cut(s) | 861 |
| PluTI | GGCGCC | 1 cut(s) | 437 |
| PmaCI | CACGTG | 1 cut(s) | 252 |
| PmlI | CACGTG | 1 cut(s) | 252 |
| PpsI | GAGTC | 1 cut(s) | 861 |
| Ppu21I | YACGTR | 2 cut(s) | 252, 656 |
| PpuMI | RGGWCCY | 1 cut(s) | 186 |
| PscI | ACATGT | 1 cut(s) | 816 |
| PshBI | ATTAAT | 2 cut(s) | 948, 975 |
| Psp124BI | GAGCTC | 2 cut(s) | 416, 593 |
| Psp5II | RGGWCCY | 1 cut(s) | 186 |
| Psp6I | CCWGG | 2 cut(s) | 94, 967 |
| PspCI | CACGTG | 1 cut(s) | 252 |
| PspFI | CCCAGC | 1 cut(s) | 540 |
| PspGI | CCWGG | 2 cut(s) | 94, 967 |
| PspN4I | GGNNCC | 8 cut(s) | 26, 109, 130, 236, 364, 370, 435, 1200 |
| PspPI | GGNCC | 3 cut(s) | 36, 186, 363 |
| PspPPI | RGGWCCY | 1 cut(s) | 186 |
| PstI | CTGCAG | 1 cut(s) | 35 |
| PstNI | CAGNNNCTG | 1 cut(s) | 509 |
| PsuI | RGATCY | 2 cut(s) | 24, 234 |
| PvuII | CAGCTG | 2 cut(s) | 509, 520 |
| RsaI | GTAC | 2 cut(s) | 862, 1169 |
| RsaNI | GTAC | 2 cut(s) | 861, 1168 |
| RseI | CAYNNNNRTG | 5 cut(s) | 212, 933, 1113, 1143, 1257 |
| SacI | GAGCTC | 2 cut(s) | 416, 593 |
| SaqAI | TTAA | 3 cut(s) | 948, 975, 987 |
| Sau3AI | GATC | 6 cut(s) | 3, 24, 234, 658, 1097, 1255 |
| Sau96I | GGNCC | 3 cut(s) | 36, 186, 363 |
| SchI | GAGTC | 1 cut(s) | 862 |
| ScrFI | CCNGG | 7 cut(s) | 96, 104, 105, 126, 564, 969, 1206 |
| SduI | GDGCHC | 3 cut(s) | 294, 416, 593 |
| SfcI | CTRYAG | 1 cut(s) | 31 |
| SfoI | GGCGCC | 1 cut(s) | 435 |
| SinI | GGWCC | 2 cut(s) | 186, 363 |
| SmaI | CCCGGG | 1 cut(s) | 105 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 212, 933, 1113, 1143, 1257 |
| SmlI | CTYRAG | 1 cut(s) | 448 |
| SmoI | CTYRAG | 1 cut(s) | 448 |
| SspDI | GGCGCC | 1 cut(s) | 433 |
| SspMI | CTAG | 7 cut(s) | 59, 261, 287, 423, 900, 1086, 1272 |
| SstI | GAGCTC | 2 cut(s) | 416, 593 |
| StyD4I | CCNGG | 7 cut(s) | 94, 102, 103, 124, 562, 967, 1204 |
| StyI | CCWWGG | 3 cut(s) | 195, 708, 1234 |
| TaaI | ACNGT | 1 cut(s) | 305 |
| TaiI | ACGT | 2 cut(s) | 254, 658 |
| TaqI | TCGA | 2 cut(s) | 806, 1219 |
| TatI | WGTACW | 1 cut(s) | 860 |
| TauI | GCSGC | 8 cut(s) | 231, 260, 549, 696, 909, 921, 1076, 1157 |
| TfiI | GAWTC | 1 cut(s) | 1177 |
| Tru1I | TTAA | 3 cut(s) | 948, 975, 987 |
| Tru9I | TTAA | 3 cut(s) | 948, 975, 987 |
| TseFI | GTSAC | 1 cut(s) | 1259 |
| TseI | GCWGC | 9 cut(s) | 30, 148, 353, 406, 503, 506, 509, 517, 909 |
| Tsp45I | GTSAC | 1 cut(s) | 1259 |
| TspDTI | ATGAA | 3 cut(s) | 463, 491, 1064 |
| TspGWI | ACGGA | 1 cut(s) | 227 |
| TspMI | CCCGGG | 1 cut(s) | 103 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 318, 1208 |
| VpaK11BI | GGWCC | 2 cut(s) | 186, 363 |
| VspI | ATTAAT | 2 cut(s) | 948, 975 |
| XapI | RAATTY | 2 cut(s) | 616, 1051 |
| XbaI | TCTAGA | 1 cut(s) | 58 |
| XceI | RCATGY | 2 cut(s) | 430, 820 |
| XmaI | CCCGGG | 1 cut(s) | 103 |
| XspI | CTAG | 7 cut(s) | 59, 261, 287, 423, 900, 1086, 1272 |