AT1G75560

Zinc knuckle (CCHC-type) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002926
Physical Location & Seq
Reverse (-)
28371141 .. 28373301
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75560.1

Sequence Viewer

Length: 774 bp
ATGAGTTCAATGAGCAGAAGCAGAAGTCGAAGTAGAAGTCGTAGTCGGGATCGGTTTCGTAGTCGGAGTCCGAGAGACAGGAGAATGAGATCTGAACGAGTTTCTTACCATGATGCTCCTTCTAGAAGGGAGAGGGAGCCACGTCGTGCCTTCAGCCAAGGAAATCTCTGCAACAACTGCAAGCGACCTGGTCACTTTGCAAGAGACTGTTCTAATGTTTCCGTCTGTAACAACTGTGGTCTTCCAGGGCACATTGCAGCAGAATGCACTGCGGAATCACGTTGTTGGAACTGTAGAGAACCGGGCCACGTAGCCTCAAACTGTTCAAACGAAGGAATCTGCCACTCCTGTGGTAAATCTGGACATCGAGCCAGAGACTGCTCTAATTCGGATTCTCGTGCAGGAGACTTAAGGCTCTGCAACAACTGCTTCAAACAGGGACATCTTGCCGCTGACTGCACAAATGACAAGGCGTGCAAGAACTGCAGGACTTCAGGTCACATAGCTCGCGATTGCAGGAACGATCCAGTTTGTAACATCTGCAGTATCTCGGGGCATGTTGCTAGACACTGCCCAAAGGGTGACAGCAATTACTCTGACAGAGGAAGCAGGGTTCGAGATGGTGGTATGCAAAGAGGTGGTTTGAGCAGAATGAGCAGAGACAGAGAAGGCGTTAGTGCTATGATAATATGTCACAATTGTGGTGGCCGAGGACACAGGGCGTACGAGTGTCCGTCTGCTCGAGTCGCTGACCGTGGATTCCGCCGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC

Protein Analysis

257

Amino Acids

28.68

Weight (kDa)

9.73

Isoelectric Point (pI)

76.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 56 - 71 8.9e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 510
AciI CCGC 3 cut(s) 272, 450, 763
AclWI GGATC 2 cut(s) 57, 518
AcoI YGGCCR 1 cut(s) 706
AcuI CTGAAG 2 cut(s) 136, 477
AdeI CACNNNGTG 1 cut(s) 146
AfaI GTAC 2 cut(s) 725, 770
AflII CTTAAG 1 cut(s) 409
AgsI TTSAA 3 cut(s) 9, 327, 433
AhdI GACNNNNNGTC 1 cut(s) 495
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 2 cut(s) 187, 244
AleI CACNNNNGTG 2 cut(s) 348, 699
AloI GAACNNNNNNTCC 2 cut(s) 597, 629
AluBI AGCT 1 cut(s) 506
AluI AGCT 1 cut(s) 506
Alw26I GTCTC 5 cut(s) 69, 198, 369, 399, 654
AlwI GGATC 2 cut(s) 57, 518
AlwNI CAGNNNCTG 1 cut(s) 378
Ama87I CYCGRG 2 cut(s) 550, 741
AoxI GGCC 2 cut(s) 304, 706
ApeKI GCWGC 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AspS9I GGNCC 1 cut(s) 304
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 593
AvaI CYCGRG 2 cut(s) 550, 741
BaeGI GKGCMC 1 cut(s) 252
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 614
BciT130I CCWGG 2 cut(s) 189, 246
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 5 cut(s) 69, 198, 369, 399, 654
BfaI CTAG 2 cut(s) 123, 564
BfmI CTRYAG 3 cut(s) 292, 484, 541
BfrI CTTAAG 1 cut(s) 409
BglII AGATCT 1 cut(s) 89
BisI GCNGC 2 cut(s) 258, 450
BlsI GCNGC 2 cut(s) 259, 451
Bme1390I CCNGG 3 cut(s) 189, 246, 303
BmeRI GACNNNNNGTC 1 cut(s) 495
BmeT110I CYCGRG 2 cut(s) 550, 741
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 3 cut(s) 189, 246, 303
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 310
BsaJI CCNNGG 4 cut(s) 157, 245, 709, 754
Bse118I RCCGGY 1 cut(s) 765
Bse1I ACTGG 1 cut(s) 527
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 2 cut(s) 189, 246
BseDI CCNNGG 4 cut(s) 157, 245, 709, 754
BseMI GCAATG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 1 cut(s) 269
BsgI GTGCAG 2 cut(s) 420, 442
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 2 cut(s) 306, 708
BsiHKCI CYCGRG 2 cut(s) 550, 741
BsiSI CCGG 2 cut(s) 302, 766
BsiWI CGTACG 1 cut(s) 723
BslFI GGGAC 1 cut(s) 453
BsmAI GTCTC 5 cut(s) 69, 198, 369, 399, 654
BsmFI GGGAC 1 cut(s) 453
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 2 cut(s) 306, 708
BsoBI CYCGRG 2 cut(s) 550, 741
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 49, 89, 523
Bsp68I TCGCGA 1 cut(s) 510
BspACI CCGC 3 cut(s) 272, 450, 763
BspANI GGCC 2 cut(s) 306, 708
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 2 cut(s) 488, 545
BspPI GGATC 2 cut(s) 57, 518
BspTI CTTAAG 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 765
BsrI ACTGG 1 cut(s) 527
BssAI RCCGGY 1 cut(s) 765
BssECI CCNNGG 4 cut(s) 157, 245, 709, 754
BssMI GATC 3 cut(s) 49, 89, 523
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 189, 246
Bst4CI ACNGT 5 cut(s) 209, 236, 293, 323, 755
BstAFI CTTAAG 1 cut(s) 409
BstAPI GCANNNNNTGC 3 cut(s) 177, 426, 483
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 182, 475, 508
BstDSI CCRYGG 1 cut(s) 754
BstFNI CGCG 1 cut(s) 510
BstKTI GATC 3 cut(s) 52, 92, 526
BstMAI GTCTC 5 cut(s) 69, 198, 369, 399, 654
BstMBI GATC 3 cut(s) 49, 89, 523
BstMWI GCNNNNNNNGC 5 cut(s) 177, 426, 483, 654, 746
BstNI CCWGG 2 cut(s) 189, 246
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 3 cut(s) 187, 244, 301
BstSFI CTRYAG 3 cut(s) 292, 484, 541
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 89
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 2 cut(s) 306, 708
BtgI CCRYGG 1 cut(s) 754
BtrI CACGTC 1 cut(s) 143
BtsI GCAGTG 2 cut(s) 267, 568
BtsIMutI CAGTG 2 cut(s) 267, 568
BtuMI TCGCGA 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 182, 475, 508
CaiI CAGNNNCTG 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 765
Cfr13I GGNCC 1 cut(s) 304
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 2 cut(s) 724, 769
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 2 cut(s) 110, 557
CviJI RGCY 8 cut(s) 139, 156, 306, 314, 371, 415, 506, 708
CviKI_1 RGCY 8 cut(s) 139, 156, 306, 314, 371, 415, 506, 708
CviQI GTAC 2 cut(s) 724, 769
DpnI GATC 3 cut(s) 51, 91, 525
DpnII GATC 3 cut(s) 49, 89, 523
DraIII CACNNNGTG 1 cut(s) 146
DriI GACNNNNNGTC 1 cut(s) 495
EaeI YGGCCR 1 cut(s) 706
Eam1105I GACNNNNNGTC 1 cut(s) 495
EciI GGCGGA 1 cut(s) 752
Eco130I CCWWGG 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 136, 477
Eco88I CYCGRG 2 cut(s) 550, 741
EcoRII CCWGG 2 cut(s) 187, 244
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 113, 560
FaiI YATR 6 cut(s) 111, 503, 558, 629, 683, 691
FaqI GGGAC 1 cut(s) 453
FatI CATG 2 cut(s) 109, 556
Fnu4HI GCNGC 2 cut(s) 258, 450
Fsp4HI GCNGC 2 cut(s) 258, 450
FspBI CTAG 2 cut(s) 123, 564
GluI GCNGC 2 cut(s) 258, 450
HaeIII GGCC 2 cut(s) 306, 708
HapII CCGG 2 cut(s) 302, 766
Hin1II CATG 2 cut(s) 113, 560
HinfI GANTC 6 cut(s) 67, 275, 336, 392, 744, 759
HpaII CCGG 2 cut(s) 302, 766
HphI GGTGA 1 cut(s) 593
Hpy188I TCNGA 5 cut(s) 66, 72, 94, 391, 598
Hpy188III TCNNGA 5 cut(s) 47, 123, 360, 509, 617
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 5 cut(s) 120, 129, 160, 326, 662
HpyCH4III ACNGT 5 cut(s) 209, 236, 293, 323, 755
HpyCH4IV ACGT 3 cut(s) 142, 280, 309
HpyF10VI GCNNNNNNNGC 5 cut(s) 177, 426, 483, 654, 746
HpySE526I ACGT 3 cut(s) 142, 280, 309
Hsp92II CATG 2 cut(s) 113, 560
Kzo9I GATC 3 cut(s) 49, 89, 523
LmnI GCTCC 2 cut(s) 121, 136
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 103
MabI ACCWGGT 1 cut(s) 187
MaeI CTAG 2 cut(s) 123, 564
MaeII ACGT 3 cut(s) 142, 280, 309
MaeIII GTNAC 6 cut(s) 191, 227, 497, 533, 581, 692
MalI GATC 3 cut(s) 51, 91, 525
MboI GATC 3 cut(s) 49, 89, 523
MboII GAAGA 1 cut(s) 233
MfeI CAATTG 1 cut(s) 697
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 3 cut(s) 385, 589, 697
MlyI GAGTC 2 cut(s) 76, 753
MmeI TCCRAC 2 cut(s) 44, 266
MnlI CCTC 5 cut(s) 126, 325, 596, 629, 704
MseI TTAA 1 cut(s) 410
MslI CAYNNNNRTG 2 cut(s) 348, 699
MspA1I CMGCKG 1 cut(s) 452
MspCI CTTAAG 1 cut(s) 409
MspI CCGG 2 cut(s) 302, 766
MspR9I CCNGG 3 cut(s) 189, 246, 303
MunI CAATTG 1 cut(s) 697
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 2 cut(s) 189, 246
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 5 cut(s) 177, 426, 483, 654, 746
NciI CCSGG 1 cut(s) 303
NdeII GATC 3 cut(s) 49, 89, 523
NlaIII CATG 2 cut(s) 113, 560
NlaIV GGNNCC 1 cut(s) 138
NmeAIII GCCGAG 1 cut(s) 734
NmuCI GTSAC 4 cut(s) 191, 497, 581, 692
NruI TCGCGA 1 cut(s) 510
NspI RCATGY 1 cut(s) 560
OliI CACNNNNGTG 2 cut(s) 348, 699
PaeR7I CTCGAG 1 cut(s) 741
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 4 cut(s) 275, 336, 392, 759
Pfl23II CGTACG 1 cut(s) 723
PflFI GACNNNGTC 1 cut(s) 189
PkrI GCNGC 2 cut(s) 259, 451
PleI GAGTC 2 cut(s) 75, 752
PpsI GAGTC 2 cut(s) 75, 752
Ppu21I YACGTR 1 cut(s) 310
Psp6I CCWGG 2 cut(s) 187, 244
PspGI CCWGG 2 cut(s) 187, 244
PspLI CGTACG 1 cut(s) 723
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 304
PspXI VCTCGAGB 1 cut(s) 741
PstI CTGCAG 2 cut(s) 488, 545
PstNI CAGNNNCTG 1 cut(s) 378
PsuI RGATCY 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 189
RruI TCGCGA 1 cut(s) 510
RsaI GTAC 2 cut(s) 725, 770
RsaNI GTAC 2 cut(s) 724, 769
RseI CAYNNNNRTG 2 cut(s) 348, 699
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 2 cut(s) 258, 450
Sau3AI GATC 3 cut(s) 49, 89, 523
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 2 cut(s) 76, 753
ScrFI CCNGG 3 cut(s) 189, 246, 303
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 145, 190, 283, 312, 499, 508, 640
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 3 cut(s) 292, 484, 541
Sfr274I CTCGAG 1 cut(s) 741
SlaI CTCGAG 1 cut(s) 741
SmiMI CAYNNNNRTG 2 cut(s) 348, 699
SmlI CTYRAG 2 cut(s) 409, 741
SmoI CTYRAG 2 cut(s) 409, 741
Sse9I AATT 3 cut(s) 385, 589, 697
SsiI CCGC 3 cut(s) 272, 450, 763
SspMI CTAG 2 cut(s) 123, 564
StyD4I CCNGG 3 cut(s) 187, 244, 301
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 5 cut(s) 209, 236, 293, 323, 755
TaiI ACGT 3 cut(s) 145, 283, 312
TaqI TCGA 4 cut(s) 28, 367, 616, 742
TasI AATT 3 cut(s) 385, 589, 697
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 4 cut(s) 275, 336, 392, 759
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 2 cut(s) 274, 575
TseFI GTSAC 4 cut(s) 191, 497, 581, 692
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 4 cut(s) 191, 497, 581, 692
TspGWI ACGGA 2 cut(s) 211, 723
TspRI CASTG 2 cut(s) 274, 575
Tth111I GACNNNGTC 1 cut(s) 189
Vha464I CTTAAG 1 cut(s) 409
XbaI TCTAGA 1 cut(s) 122
XceI RCATGY 1 cut(s) 560
XhoI CTCGAG 1 cut(s) 741
XspI CTAG 2 cut(s) 123, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.