Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Reverse (-)

25572631 .. 25574906

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G231800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGTCTGAATAGAAGCCAAAGTCCAGAACGAGGCAAGAGGTTCCGCAGCAGTGAACGCACATCTTACCGTGATGCCCCATATCCTAGAGAGCGCCGCAGTCATCGGCAAGATTATCTTTGCAATAAATGTAAACGGCCAGGGCATTTTGCCAGGGATTGTTCGAATATGACTGTCTGCAACAACTGTGGACTTCCTGGCCACCTTGCTGCTGAATGCAACTCAATAACCATGTGCTGGAACTGTAAGGAGCCTGGACATCTTGCAAGCCAATGCTCAAATGATCCAGTCTGTCATATGTGTGGTAAGATAGGGCACCTGGCTCGGGATTGCGCGAACCCTAGTCTTCCAGCCCATGATGCAAGACTATGCAACAACTGTTACAAGCCAGGTCATATTGCAGTGGATTGCACAAATGAGAAGGCTTGCAACAATTGTCGGAAACCTGGTCACCTTGCTTGCAACTGCCCCAATGAACCTGTTTGTCACACCTGCAACATAGCAGGTCACATTGCCCGCCAGTGCGCCAAGTCAAGCCGGGCACCAGACATCGGCGGCCCTTTCCGCGACATTATGTGCCGTAATTGTGGGCTGCCAGGCCATGCCATCCGAGAGTGCGTATCCATTGTCATCTGCAACAACTGTGGTGGAAGGGGTCACCAAGCTTATGAGTGCCCTTCTTCTGCCTTGATATGTGGTCGTCGTGGCATCCGTAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

241

Amino Acids

26.47

Weight (kDa)

8.95

Isoelectric Point (pI)

63.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	500
Acc36I	ACCTGC	2 cut(s)	494, 500
AccB1I	GGYRCC	2 cut(s)	315, 541
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccII	CGCG	2 cut(s)	335, 567
AciI	CCGC	5 cut(s)	46, 97, 517, 555, 565
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	2 cut(s)	137, 199
AfiI	CCNNNNNNNGG	4 cut(s)	32, 237, 325, 551
AjnI	CCWGG	8 cut(s)	139, 152, 196, 253, 318, 388, 445, 595
AluBI	AGCT	1 cut(s)	665
AluI	AGCT	1 cut(s)	665
AlwI	GGATC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	4 cut(s)	137, 199, 556, 598
ApeKI	GCWGC	3 cut(s)	48, 209, 592
AspLEI	GCGC	3 cut(s)	96, 335, 527
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	443, 650
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	324
BaeGI	GKGCMC	3 cut(s)	318, 544, 677
BalI	TGGCCA	1 cut(s)	201
BanI	GGYRCC	2 cut(s)	315, 541
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	60, 196, 579
BccI	CCATC	1 cut(s)	614
BceAI	ACGGC	2 cut(s)	152, 564
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	8 cut(s)	141, 154, 198, 255, 320, 390, 447, 597
BciVI	GTATCC	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	539
BfaI	CTAG	2 cut(s)	87, 342
BfoI	RGCGCY	1 cut(s)	97
BfuAI	ACCTGC	2 cut(s)	494, 500
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	5 cut(s)	49, 97, 210, 556, 593
BlsI	GCNGC	5 cut(s)	50, 98, 211, 557, 594
Bme1390I	CCNGG	9 cut(s)	141, 154, 198, 255, 320, 390, 447, 539, 597
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	4 cut(s)	44, 252, 317, 543
BmrFI	CCNGG	9 cut(s)	141, 154, 198, 255, 320, 390, 447, 539, 597
BmsI	GCATC	3 cut(s)	64, 349, 717
BpiI	GAAGAC	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	539
BsaJI	CCNNGG	2 cut(s)	140, 153
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 237, 325, 551
Bse1I	ACTGG	2 cut(s)	287, 520
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	8 cut(s)	141, 154, 198, 255, 320, 390, 447, 597
BseDI	CCNNGG	2 cut(s)	140, 153
BseGI	GGATG	2 cut(s)	606, 708
BseLI	CCNNNNNNNGG	4 cut(s)	32, 237, 325, 551
BseMI	GCAATG	1 cut(s)	510
BseNI	ACTGG	2 cut(s)	287, 520
BseSI	GKGCMC	3 cut(s)	318, 544, 677
BseXI	GCAGC	3 cut(s)	60, 196, 579
Bsh1236I	CGCG	2 cut(s)	335, 567
BshFI	GGCC	4 cut(s)	139, 201, 558, 600
BshNI	GGYRCC	2 cut(s)	315, 541
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	538
BslI	CCNNNNNNNGG	4 cut(s)	32, 237, 325, 551
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	139, 201, 558, 600
BsoBI	CYCGRG	1 cut(s)	324
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	318, 544, 677
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	5 cut(s)	46, 97, 517, 555, 565
BspANI	GGCC	4 cut(s)	139, 201, 558, 600
BspFNI	CGCG	2 cut(s)	335, 567
BspLI	GGNNCC	4 cut(s)	44, 252, 317, 543
BspMI	ACCTGC	2 cut(s)	494, 500
BspPI	GGATC	1 cut(s)	278
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	2 cut(s)	315, 541
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	287, 520
BssECI	CCNNGG	2 cut(s)	140, 153
BssMI	GATC	1 cut(s)	283
Bst2UI	CCWGG	8 cut(s)	141, 154, 198, 255, 320, 390, 447, 597
Bst4CI	ACNGT	6 cut(s)	71, 175, 188, 245, 380, 644
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	4 cut(s)	268, 427, 460, 517
BstEII	GGTNACC	2 cut(s)	449, 656
BstF5I	GGATG	2 cut(s)	606, 708
BstFNI	CGCG	2 cut(s)	335, 567
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	3 cut(s)	96, 335, 527
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 359, 564
BstNI	CCWGG	8 cut(s)	141, 154, 198, 255, 320, 390, 447, 597
BstPI	GGTNACC	2 cut(s)	449, 656
BstSCI	CCNGG	9 cut(s)	139, 152, 196, 253, 318, 388, 445, 537, 595
BstSLI	GKGCMC	3 cut(s)	318, 544, 677
BstUI	CGCG	2 cut(s)	335, 567
BstV1I	GCAGC	3 cut(s)	60, 196, 579
BstV2I	GAAGAC	1 cut(s)	338
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	4 cut(s)	139, 201, 558, 600
BtsCI	GGATG	2 cut(s)	606, 708
BtsI	GCAGTG	2 cut(s)	58, 408
BtsIMutI	CAGTG	3 cut(s)	58, 408, 527
BveI	ACCTGC	2 cut(s)	494, 500
Cac8I	GCNNGC	4 cut(s)	268, 427, 460, 517
CfoI	GCGC	3 cut(s)	96, 335, 527
Cfr13I	GGNCC	1 cut(s)	557
CsiI	ACCWGGT	1 cut(s)	445
CspCI	CAANNNNNGTGG	6 cut(s)	169, 204, 625, 628, 660, 663
CviAII	CATG	3 cut(s)	232, 356, 602
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	2 cut(s)	137, 199
Eco88I	CYCGRG	1 cut(s)	324
Eco91I	GGTNACC	2 cut(s)	449, 656
EcoO65I	GGTNACC	2 cut(s)	449, 656
EcoRII	CCWGG	8 cut(s)	139, 152, 196, 253, 318, 388, 445, 595
FaeI	CATG	3 cut(s)	235, 359, 605
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	3 cut(s)	231, 355, 601
FauI	CCCGC	1 cut(s)	524
FauNDI	CATATG	1 cut(s)	297
Fnu4HI	GCNGC	5 cut(s)	49, 97, 210, 556, 593
FokI	GGATG	2 cut(s)	593, 695
Fsp4HI	GCNGC	5 cut(s)	49, 97, 210, 556, 593
FspBI	CTAG	2 cut(s)	87, 342
GlaI	GCGC	3 cut(s)	95, 334, 526
GluI	GCNGC	5 cut(s)	49, 97, 210, 556, 593
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	4 cut(s)	139, 201, 558, 600
HapII	CCGG	1 cut(s)	538
HhaI	GCGC	3 cut(s)	96, 335, 527
Hin1II	CATG	3 cut(s)	235, 359, 605
Hin6I	GCGC	3 cut(s)	94, 333, 525
HinP1I	GCGC	3 cut(s)	94, 333, 525
HindIII	AAGCTT	1 cut(s)	663
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	2 cut(s)	443, 650
Hpy166II	GTNNAC	3 cut(s)	56, 134, 191
Hpy188I	TCNGA	3 cut(s)	9, 441, 611
Hpy188III	TCNNGA	2 cut(s)	26, 326
Hpy8I	GTNNAC	3 cut(s)	56, 134, 191
Hpy99I	CGWCG	1 cut(s)	705
HpyAV	CCTTC	3 cut(s)	415, 645, 687
HpyCH4III	ACNGT	6 cut(s)	71, 175, 188, 245, 380, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 359, 564
Hsp92II	CATG	3 cut(s)	235, 359, 605
HspAI	GCGC	3 cut(s)	94, 333, 525
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	3 cut(s)	60, 196, 579
LweI	GCATC	3 cut(s)	64, 349, 717
MabI	ACCWGGT	1 cut(s)	445
MaeI	CTAG	2 cut(s)	87, 342
MaeIII	GTNAC	5 cut(s)	380, 449, 485, 506, 656
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	338, 672
MfeI	CAATTG	1 cut(s)	433
MhlI	GDGCHC	3 cut(s)	318, 544, 677
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	2 cut(s)	433, 583
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	2 cut(s)	26, 33
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	201
MspI	CCGG	1 cut(s)	538
MspR9I	CCNGG	9 cut(s)	141, 154, 198, 255, 320, 390, 447, 539, 597
MunI	CAATTG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	8 cut(s)	141, 154, 198, 255, 320, 390, 447, 597
MvnI	CGCG	2 cut(s)	335, 567
MwoI	GCNNNNNNNGC	3 cut(s)	57, 359, 564
NciI	CCSGG	1 cut(s)	539
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	235, 359, 605
NlaIV	GGNNCC	4 cut(s)	44, 252, 317, 543
NmuCI	GTSAC	4 cut(s)	449, 485, 506, 656
NspV	TTCGAA	1 cut(s)	164
PaqCI	CACCTGC	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	709
PctI	GAATGC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	5 cut(s)	50, 98, 211, 557, 594
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	8 cut(s)	139, 152, 196, 253, 318, 388, 445, 595
PspEI	GGTNACC	2 cut(s)	449, 656
PspGI	CCWGG	8 cut(s)	139, 152, 196, 253, 318, 388, 445, 595
PspN4I	GGNNCC	4 cut(s)	44, 252, 317, 543
PspPI	GGNCC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	300
SatI	GCNGC	5 cut(s)	49, 97, 210, 556, 593
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	9 cut(s)	141, 154, 198, 255, 320, 390, 447, 539, 597
SduI	GDGCHC	3 cut(s)	318, 544, 677
SexAI	ACCWGGT	1 cut(s)	445
SfaNI	GCATC	3 cut(s)	64, 349, 717
SfuI	TTCGAA	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	2 cut(s)	433, 583
SsiI	CCGC	5 cut(s)	46, 97, 517, 555, 565
SspMI	CTAG	2 cut(s)	87, 342
StyD4I	CCNGG	9 cut(s)	139, 152, 196, 253, 318, 388, 445, 537, 595
TaaI	ACNGT	6 cut(s)	71, 175, 188, 245, 380, 644
TaqI	TCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	433, 583
TauI	GCSGC	2 cut(s)	99, 558
TscAI	CASTG	3 cut(s)	58, 408, 527
TseFI	GTSAC	4 cut(s)	449, 485, 506, 656
TseI	GCWGC	3 cut(s)	48, 209, 592
Tsp45I	GTSAC	4 cut(s)	449, 485, 506, 656
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	3 cut(s)	58, 408, 527
Van91I	CCANNNNNTGG	1 cut(s)	237
XspI	CTAG	2 cut(s)	87, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.