Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Forward (+)

5510544 .. 5512752

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGTTCAGACAGCAGGAGCCGGAGCAGGAGCAGGAGCCCTTCAGATCGGAAGATCCGTTCTGATCGTTTTTCCTACCGTGATGCACCTTACAGGAGAGATGGAGGACGTCAGGGTTTCAGCCGAGACAATCTGTGCAAGAACTGCAAACGGCCAGGCCATTTTGCTAGAGAATGCCCCAATGTTGCAATTTGTCATAATTGTGGTCTTCCTGGGCACATTGCTTCAGAGTGTACAACAAAGTCACTATGTTGGAACTGCCGGGAACCTGGTCACATGGCCGGTAACTGCCCAAATGAAGGCATCTGCCACACTTGTAGTAAAACTGGACATCGCGCCCGAGACTGCACAGCTCCCCCAATGCCACCTGGGGACTTGAGGTTGTGCAACAACTGCTACAAGCAGGGTCATATTGCAGCTGACTGCACAAATGATAAGGCATGTAACAACTGTAGGAAGACGGGTCACCTGGCACGTGATTGCCCAAACGAACCCATCTGCAACTTATGCAATGTATCGGGGCATGTGGCGAGACAGTGCCCCAGAGCCAATGTTTTGGGAGAGCGGGGAGGTGGAGGAGGTGTAGGTGGTGGAATGGGGGGACGCGGAGGCAGTTACCGTGACGTTGTATGTAGGAACTGCCAGCAACTTGGCCACATGAGCAGGGATTGCATGGGCCCCTTGATGATCTGTCACAACTGTGGGGGACGAGGACACTTGGCATACGAGTGCCCTTCGGGAAGATTCATGGATCGCTACCCCAGGAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

258

Amino Acids

28.18

Weight (kDa)

9.17

Isoelectric Point (pI)

70.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	565
AccII	CGCG	2 cut(s)	336, 606
AciI	CCGC	2 cut(s)	565, 606
AclWI	GGATC	2 cut(s)	49, 759
AcoI	YGGCCR	3 cut(s)	152, 279, 652
AcuI	CTGAAG	2 cut(s)	27, 210
AcvI	CACGTG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	2 cut(s)	235, 770
AfiI	CCNNNNNNNGG	1 cut(s)	299
AjnI	CCWGG	6 cut(s)	154, 211, 268, 367, 468, 761
AleI	CACNNNNGTG	1 cut(s)	699
AloI	GAACNNNNNNTCC	2 cut(s)	43, 75
AluBI	AGCT	2 cut(s)	353, 419
AluI	AGCT	2 cut(s)	353, 419
Alw26I	GTCTC	3 cut(s)	120, 336, 526
AlwI	GGATC	2 cut(s)	49, 759
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	5 cut(s)	152, 157, 279, 652, 676
ApaI	GGGCCC	1 cut(s)	680
ApeKI	GCWGC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	676, 677
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	339
BaeGI	GKGCMC	4 cut(s)	219, 542, 680, 734
BalI	TGGCCA	1 cut(s)	654
BanII	GRGCYC	2 cut(s)	41, 680
BbrPI	CACGTG	1 cut(s)	476
BbsI	GAAGAC	2 cut(s)	200, 464
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	2 cut(s)	95, 503
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	6 cut(s)	156, 213, 270, 369, 470, 763
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	3 cut(s)	120, 336, 526
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	451
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	7 cut(s)	156, 213, 263, 270, 369, 470, 763
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	676, 677
BmiI	GGNNCC	5 cut(s)	20, 38, 267, 678, 679
BmrFI	CCNGG	7 cut(s)	156, 213, 263, 270, 369, 470, 763
BmsI	GCATC	2 cut(s)	73, 312
BpiI	GAAGAC	2 cut(s)	200, 464
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	212, 368, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	2 cut(s)	219, 517
BseBI	CCWGG	6 cut(s)	156, 213, 270, 369, 470, 763
BseDI	CCNNGG	3 cut(s)	212, 368, 761
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMI	GCAATG	2 cut(s)	219, 517
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	591
BseSI	GKGCMC	4 cut(s)	219, 542, 680, 734
BseXI	GCAGC	1 cut(s)	428
BsgI	GTGCAG	2 cut(s)	331, 409
Bsh1236I	CGCG	2 cut(s)	336, 606
BshFI	GGCC	5 cut(s)	154, 159, 281, 654, 678
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	22, 262, 282
BslFI	GGGAC	3 cut(s)	386, 615, 720
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	3 cut(s)	120, 336, 526
BsmFI	GGGAC	3 cut(s)	386, 615, 720
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	5 cut(s)	154, 159, 281, 654, 678
BsoBI	CYCGRG	1 cut(s)	339
Bsp120I	GGGCCC	1 cut(s)	676
Bsp1286I	GDGCHC	5 cut(s)	41, 219, 542, 680, 734
Bsp1407I	TGTACA	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	46, 54, 64, 687, 751
BspACI	CCGC	2 cut(s)	565, 606
BspANI	GGCC	5 cut(s)	154, 159, 281, 654, 678
BspFNI	CGCG	2 cut(s)	336, 606
BspLI	GGNNCC	5 cut(s)	20, 38, 267, 678, 679
BspPI	GGATC	2 cut(s)	49, 759
BsrBI	CCGCTC	1 cut(s)	565
BsrDI	GCAATG	2 cut(s)	219, 517
BsrFI	RCCGGY	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	212, 368, 761
BssMI	GATC	5 cut(s)	46, 54, 64, 687, 751
BssNI	GRCGYC	1 cut(s)	109
Bst2UI	CCWGG	6 cut(s)	156, 213, 270, 369, 470, 763
Bst4CI	ACNGT	5 cut(s)	80, 452, 537, 620, 701
BstACI	GRCGYC	1 cut(s)	109
BstAPI	GCANNNNNTGC	4 cut(s)	144, 393, 507, 669
BstAUI	TGTACA	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	644
BstEII	GGTNACC	1 cut(s)	464
BstFNI	CGCG	2 cut(s)	336, 606
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	49, 57, 67, 690, 754
BstMAI	GTCTC	3 cut(s)	120, 336, 526
BstMBI	GATC	5 cut(s)	46, 54, 64, 687, 751
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 393, 507, 660, 669
BstNI	CCWGG	6 cut(s)	156, 213, 270, 369, 470, 763
BstNSI	RCATGY	2 cut(s)	444, 527
BstPI	GGTNACC	1 cut(s)	464
BstSCI	CCNGG	7 cut(s)	154, 211, 261, 268, 367, 468, 761
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	4 cut(s)	219, 542, 680, 734
BstUI	CGCG	2 cut(s)	336, 606
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	2 cut(s)	200, 464
BstX2I	RGATCY	1 cut(s)	54
BstXI	CCANNNNNNTGG	2 cut(s)	556, 650
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	5 cut(s)	154, 159, 281, 654, 678
BtgZI	GCGATG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	1 cut(s)	644
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	676, 677
CseI	GACGC	1 cut(s)	612
CsiI	ACCWGGT	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	234, 769
CviAII	CATG	6 cut(s)	277, 441, 524, 658, 673, 748
CviQI	GTAC	2 cut(s)	234, 769
DpnI	GATC	5 cut(s)	48, 56, 66, 689, 753
DpnII	GATC	5 cut(s)	46, 54, 64, 687, 751
EaeI	YGGCCR	3 cut(s)	152, 279, 652
Eco24I	GRGCYC	2 cut(s)	41, 680
Eco57I	CTGAAG	2 cut(s)	27, 210
Eco72I	CACGTG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	339
Eco91I	GGTNACC	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	677
EcoO65I	GGTNACC	1 cut(s)	464
EcoRII	CCWGG	6 cut(s)	154, 211, 268, 367, 468, 761
EcoT38I	GRGCYC	2 cut(s)	41, 680
FaeI	CATG	6 cut(s)	280, 444, 527, 661, 676, 751
FaqI	GGGAC	3 cut(s)	386, 615, 720
FatI	CATG	6 cut(s)	276, 440, 523, 657, 672, 747
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	1 cut(s)	417
FriOI	GRGCYC	2 cut(s)	41, 680
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	5 cut(s)	154, 159, 281, 654, 678
HapII	CCGG	3 cut(s)	22, 262, 282
HgaI	GACGC	1 cut(s)	612
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	6 cut(s)	280, 444, 527, 661, 676, 751
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	1 cut(s)	744
HpaII	CCGG	3 cut(s)	22, 262, 282
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	5 cut(s)	10, 46, 51, 64, 229
Hpy188III	TCNNGA	1 cut(s)	738
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	3 cut(s)	51, 293, 744
HpyCH4III	ACNGT	5 cut(s)	80, 452, 537, 620, 701
HpyCH4IV	ACGT	3 cut(s)	109, 475, 624
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 393, 507, 660, 669
HpySE526I	ACGT	3 cut(s)	109, 475, 624
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	6 cut(s)	280, 444, 527, 661, 676, 751
HspAI	GCGC	1 cut(s)	336
Kzo9I	GATC	5 cut(s)	46, 54, 64, 687, 751
LmnI	GCTCC	5 cut(s)	18, 24, 30, 36, 358
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	2 cut(s)	73, 312
MabI	ACCWGGT	1 cut(s)	268
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	3 cut(s)	109, 475, 624
MaeIII	GTNAC	8 cut(s)	243, 272, 284, 443, 464, 614, 620, 692
MalI	GATC	5 cut(s)	48, 56, 66, 689, 753
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	5 cut(s)	46, 54, 64, 687, 751
MboII	GAAGA	4 cut(s)	64, 200, 469, 753
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	5 cut(s)	41, 219, 542, 680, 734
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	2 cut(s)	189, 199
MluNI	TGGCCA	1 cut(s)	654
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	8 cut(s)	98, 372, 563, 569, 572, 602, 704, 759
Mox20I	TGGCCA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	654
MslI	CAYNNNNRTG	3 cut(s)	201, 699, 727
Msp20I	TGGCCA	1 cut(s)	654
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	3 cut(s)	22, 262, 282
MspR9I	CCNGG	7 cut(s)	156, 213, 263, 270, 369, 470, 763
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	6 cut(s)	156, 213, 270, 369, 470, 763
MvnI	CGCG	2 cut(s)	336, 606
MwoI	GCNNNNNNNGC	5 cut(s)	144, 393, 507, 660, 669
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	5 cut(s)	46, 54, 64, 687, 751
NlaIII	CATG	6 cut(s)	280, 444, 527, 661, 676, 751
NlaIV	GGNNCC	5 cut(s)	20, 38, 267, 678, 679
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	5 cut(s)	243, 272, 464, 620, 692
NspI	RCATGY	2 cut(s)	444, 527
OliI	CACNNNNGTG	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	744
PkrI	GCNGC	1 cut(s)	418
PmaCI	CACGTG	1 cut(s)	476
PmlI	CACGTG	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	476
Psp6I	CCWGG	6 cut(s)	154, 211, 268, 367, 468, 761
PspCI	CACGTG	1 cut(s)	476
PspEI	GGTNACC	1 cut(s)	464
PspGI	CCWGG	6 cut(s)	154, 211, 268, 367, 468, 761
PspN4I	GGNNCC	5 cut(s)	20, 38, 267, 678, 679
PspOMI	GGGCCC	1 cut(s)	676
PspPI	GGNCC	2 cut(s)	676, 677
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	235, 770
RsaNI	GTAC	2 cut(s)	234, 769
RseI	CAYNNNNRTG	3 cut(s)	201, 699, 727
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	5 cut(s)	46, 54, 64, 687, 751
Sau96I	GGNCC	2 cut(s)	676, 677
ScrFI	CCNGG	7 cut(s)	156, 213, 263, 270, 369, 470, 763
SduI	GDGCHC	5 cut(s)	41, 219, 542, 680, 734
SexAI	ACCWGGT	1 cut(s)	268
SfaNI	GCATC	2 cut(s)	73, 312
SfcI	CTRYAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	3 cut(s)	201, 699, 727
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	2 cut(s)	189, 199
SsiI	CCGC	2 cut(s)	565, 606
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	7 cut(s)	154, 211, 261, 268, 367, 468, 761
TaaI	ACNGT	5 cut(s)	80, 452, 537, 620, 701
TaiI	ACGT	3 cut(s)	112, 478, 627
TasI	AATT	2 cut(s)	189, 199
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	744
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	5 cut(s)	243, 272, 464, 620, 692
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	5 cut(s)	243, 272, 464, 620, 692
TspDTI	ATGAA	2 cut(s)	312, 736
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	542
XceI	RCATGY	2 cut(s)	444, 527
XspI	CTAG	1 cut(s)	168
ZraI	GACGTC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.