Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Reverse (-)

23722339 .. 23725022

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1124300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGTGTGAATAGAAGTCAAAGCCCAGAACGAGCCAAGAGATACCGCAGCAGAGAACGCGCATCTTACCATGATGCTCCATATCCTAGTGAACGCCGCAGTTATAGGCAAGATTGTCTTTGCAATAAATGTAAACGGCCAGGGCATTTTGCAAGGGATTGCCCGAATATGACTGTCTGCAACAACTGTGGACTTCCAGGCCACATTGCAGCTGAATGCAACTCAACAACTATGTGTTGGAACTGCAAGGAGCCTGGACATCTTGCAAACCAATGTTCCAATAATCCAGTCTGCCATATATGTAGTAAGAAAGGCCACCTGGCTCGTGATTGCTCGAACCCTAGTCCTTCATCCCATGATGCAAGGCTCTGCAACAACTGCTACAAACCGGGTCATATTGCTGTCTATTGCACAAACGAGAAGGCTTGCAACAACTGTCGGAAACCTGGACACCTTGCTCGTGACTGCCCCAACGAACCTGTTTGCCACACCTGCAACATATCAGGTCATATGGCTCGCCATTGCGACAAGTCAAGCCTAGCCCCAGACATCAGAGGCCCCTTCCGCGACATCACGTGCCGTAACTGTGGGCTGCCAGGCCATATCGGCCGAGAGTGCATATCGATTGTCATCTGCCACAATTGTGGTGGAATGGGTCACCAAGCTTATGAGTGCCCTTCTGCGTTGATGATCTACGGTCGCGGCCTACGAAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

240

Amino Acids

26.65

Weight (kDa)

8.91

Isoelectric Point (pI)

72.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	142 - 158	2.2e-06	Zinc knuckle
zf-CCHC	PF00098	211 - 227	6.9e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	500
AccII	CGCG	3 cut(s)	60, 567, 702
AciI	CCGC	4 cut(s)	46, 97, 565, 702
AcoI	YGGCCR	2 cut(s)	137, 607
AcvI	CACGTG	1 cut(s)	576
AjnI	CCWGG	6 cut(s)	139, 196, 253, 318, 445, 595
AleI	CACNNNNGTG	1 cut(s)	642
AluBI	AGCT	2 cut(s)	212, 665
AluI	AGCT	2 cut(s)	212, 665
AoxI	GGCC	7 cut(s)	137, 199, 313, 556, 598, 607, 703
ApeKI	GCWGC	3 cut(s)	48, 209, 592
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	677
BauI	CACGAG	2 cut(s)	324, 459
BbrPI	CACGTG	1 cut(s)	576
BbvI	GCAGC	3 cut(s)	60, 221, 579
BceAI	ACGGC	2 cut(s)	152, 564
BciT130I	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
BcnI	CCSGG	1 cut(s)	390
BfaI	CTAG	3 cut(s)	87, 342, 539
BfuAI	ACCTGC	1 cut(s)	500
BglI	GCCNNNNNGGC	1 cut(s)	606
BisI	GCNGC	5 cut(s)	49, 97, 210, 593, 703
BlsI	GCNGC	5 cut(s)	50, 98, 211, 594, 704
Bme1390I	CCNGG	7 cut(s)	141, 198, 255, 320, 390, 447, 597
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	2 cut(s)	252, 559
BmrFI	CCNGG	7 cut(s)	141, 198, 255, 320, 390, 447, 597
BmsI	GCATC	3 cut(s)	64, 71, 349
BpuMI	CCSGG	1 cut(s)	390
Bsa29I	ATCGAT	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	576
BsaBI	GATNNNNATC	1 cut(s)	629
BsaJI	CCNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	2 cut(s)	204, 520
Bse8I	GATNNNNATC	1 cut(s)	629
BseBI	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	350
BseJI	GATNNNNATC	1 cut(s)	629
BseMI	GCAATG	2 cut(s)	204, 520
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	677
BseX3I	CGGCCG	1 cut(s)	607
BseXI	GCAGC	3 cut(s)	60, 221, 579
Bsh1236I	CGCG	3 cut(s)	60, 567, 702
Bsh1285I	CGRYCG	2 cut(s)	610, 700
BshFI	GGCC	7 cut(s)	139, 201, 315, 558, 600, 609, 705
BshVI	ATCGAT	1 cut(s)	623
BsiEI	CGRYCG	2 cut(s)	610, 700
BsiSI	CCGG	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	7 cut(s)	139, 201, 315, 558, 600, 609, 705
Bsp1286I	GDGCHC	1 cut(s)	677
Bsp143I	GATC	1 cut(s)	690
BspACI	CCGC	4 cut(s)	46, 97, 565, 702
BspANI	GGCC	7 cut(s)	139, 201, 315, 558, 600, 609, 705
BspDI	ATCGAT	1 cut(s)	623
BspFNI	CGCG	3 cut(s)	60, 567, 702
BspLI	GGNNCC	2 cut(s)	252, 559
BspMI	ACCTGC	1 cut(s)	500
BsrDI	GCAATG	2 cut(s)	204, 520
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	690
BssSI	CACGAG	2 cut(s)	324, 459
Bst2BI	CACGAG	2 cut(s)	324, 459
Bst2UI	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
Bst4CI	ACNGT	5 cut(s)	175, 188, 437, 587, 698
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	427, 517
BstEII	GGTNACC	1 cut(s)	656
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	3 cut(s)	60, 567, 702
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	693
BstMBI	GATC	1 cut(s)	690
BstMCI	CGRYCG	2 cut(s)	610, 700
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 378, 492, 564, 606, 615
BstNI	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
BstPI	GGTNACC	1 cut(s)	656
BstSCI	CCNGG	7 cut(s)	139, 196, 253, 318, 388, 445, 595
BstSLI	GKGCMC	1 cut(s)	677
BstUI	CGCG	3 cut(s)	60, 567, 702
BstV1I	GCAGC	3 cut(s)	60, 221, 579
BstXI	CCANNNNNNTGG	1 cut(s)	644
BstZI	CGGCCG	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	623
BsuRI	GGCC	7 cut(s)	139, 201, 315, 558, 600, 609, 705
BsuTUI	ATCGAT	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	2 cut(s)	427, 517
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	557
ClaI	ATCGAT	1 cut(s)	623
CspCI	CAANNNNNGTGG	4 cut(s)	169, 204, 628, 663
CviAII	CATG	2 cut(s)	71, 356
DpnI	GATC	1 cut(s)	692
DpnII	GATC	1 cut(s)	690
EaeI	YGGCCR	2 cut(s)	137, 607
EagI	CGGCCG	1 cut(s)	607
EclXI	CGGCCG	1 cut(s)	607
Eco52I	CGGCCG	1 cut(s)	607
Eco72I	CACGTG	1 cut(s)	576
Eco91I	GGTNACC	1 cut(s)	656
EcoO109I	RGGNCCY	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	656
EcoRII	CCWGG	6 cut(s)	139, 196, 253, 318, 445, 595
FaeI	CATG	2 cut(s)	74, 359
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	2 cut(s)	70, 355
FauNDI	CATATG	1 cut(s)	510
Fnu4HI	GCNGC	5 cut(s)	49, 97, 210, 593, 703
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	5 cut(s)	49, 97, 210, 593, 703
FspBI	CTAG	3 cut(s)	87, 342, 539
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	5 cut(s)	49, 97, 210, 593, 703
HaeIII	GGCC	7 cut(s)	139, 201, 315, 558, 600, 609, 705
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	74, 359
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	663
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	3 cut(s)	92, 134, 191
Hpy188I	TCNGA	2 cut(s)	441, 554
Hpy188III	TCNNGA	2 cut(s)	326, 461
Hpy8I	GTNNAC	3 cut(s)	92, 134, 191
HpyAV	CCTTC	5 cut(s)	357, 415, 571, 687, 705
HpyCH4III	ACNGT	5 cut(s)	175, 188, 437, 587, 698
HpyCH4IV	ACGT	1 cut(s)	575
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 378, 492, 564, 606, 615
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	2 cut(s)	74, 359
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	690
LmnI	GCTCC	2 cut(s)	82, 250
Lsp1109I	GCAGC	3 cut(s)	60, 221, 579
LweI	GCATC	3 cut(s)	64, 71, 349
MaeI	CTAG	3 cut(s)	87, 342, 539
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	3 cut(s)	461, 581, 656
MalI	GATC	1 cut(s)	692
MboI	GATC	1 cut(s)	690
MfeI	CAATTG	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	677
MluCI	AATT	1 cut(s)	640
MmeI	TCCRAC	2 cut(s)	218, 419
MnlI	CCTC	1 cut(s)	548
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	7 cut(s)	141, 198, 255, 320, 390, 447, 597
MunI	CAATTG	1 cut(s)	640
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
MvnI	CGCG	3 cut(s)	60, 567, 702
MwoI	GCNNNNNNNGC	6 cut(s)	57, 378, 492, 564, 606, 615
NciI	CCSGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	1 cut(s)	690
NlaIII	CATG	2 cut(s)	74, 359
NlaIV	GGNNCC	2 cut(s)	252, 559
NmeAIII	GCCGAG	1 cut(s)	635
NmuCI	GTSAC	2 cut(s)	461, 656
OliI	CACNNNNGTG	1 cut(s)	642
PaqCI	CACCTGC	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	706
PctI	GAATGC	1 cut(s)	221
PkrI	GCNGC	5 cut(s)	50, 98, 211, 594, 704
PmaCI	CACGTG	1 cut(s)	576
PmlI	CACGTG	1 cut(s)	576
Ppu21I	YACGTR	1 cut(s)	576
Psp6I	CCWGG	6 cut(s)	139, 196, 253, 318, 445, 595
PspCI	CACGTG	1 cut(s)	576
PspEI	GGTNACC	1 cut(s)	656
PspGI	CCWGG	6 cut(s)	139, 196, 253, 318, 445, 595
PspN4I	GGNNCC	2 cut(s)	252, 559
PspPI	GGNCC	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	642
SatI	GCNGC	5 cut(s)	49, 97, 210, 593, 703
Sau3AI	GATC	1 cut(s)	690
Sau96I	GGNCC	1 cut(s)	557
ScrFI	CCNGG	7 cut(s)	141, 198, 255, 320, 390, 447, 597
SduI	GDGCHC	1 cut(s)	677
SfaNI	GCATC	3 cut(s)	64, 71, 349
SfiI	GGCCNNNNNGGCC	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	1 cut(s)	640
SsiI	CCGC	4 cut(s)	46, 97, 565, 702
SspMI	CTAG	3 cut(s)	87, 342, 539
StyD4I	CCNGG	7 cut(s)	139, 196, 253, 318, 388, 445, 595
TaaI	ACNGT	5 cut(s)	175, 188, 437, 587, 698
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	2 cut(s)	335, 623
TasI	AATT	1 cut(s)	640
TauI	GCSGC	2 cut(s)	99, 705
TseFI	GTSAC	2 cut(s)	461, 656
TseI	GCWGC	3 cut(s)	48, 209, 592
Tsp45I	GTSAC	2 cut(s)	461, 656
TspDTI	ATGAA	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XspI	CTAG	3 cut(s)	87, 342, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.