Prupe.8G085500_v2.0.a1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0002926
Physical Location & Seq
Forward (+)
11851007 .. 11853673
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G085500.1

Sequence Viewer

Length: 702 bp
ATGAGTTCAGACAGCAGGAGCCGAAGCAGGAGCAGGAGCAGGAGTCCTACGGATCGTAAGATCCGTTCTGATCGCTTTTCCTACCGCGATGCACCTTACAGGAGAGATGGAGGACGTCGGGGTTTCAGCCGAGACAATCTGTGCAAGAACTGCAAACGTCCAGGCCATTATGCTAGAGAATGCCCTAATGTTGCAATTTGTCACAATTGTGGTCTTCCTGGGCACATTGCTTCAGAGTGTACTACAAAGTCGCTATGTTGGAATTGCCGGGAACCTGGTCACATGGCCAGTAACTGCCCAAATGAAGGCATCTGCCACACCTGTGGTAAGGCTGGACATCGCGCTAGAGATTGCACAGCTCCCCCAATGCCACCTGGGGACTTGAGGTTGTGCAACAACTGCTACAAGCAGGGTCATATTGCAGCTGACTGCACAAATGATAAAGCATGTAACAACTGTAGAAAGACAGCCAATGTCTTGGGAGAGCAGCGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGAGGTGGAATGCGCGGCGGCGGTTACCGTGACATTGTTTGTAGGAACTGCCAACAACTTGGGCATATGAGCAGGGATTGTATGGGCCCCTTGATGATCTGTCACAACTGTGGGGGACGAGGACACCTGGCATACGAGTGCCCTTCTGGCAGATTTATGGATCGCTACCCCAGGAGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

234

Amino Acids

25.54

Weight (kDa)

9.36

Isoelectric Point (pI)

83.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 118
AccII CGCG 3 cut(s) 87, 342, 534
AciI CCGC 4 cut(s) 85, 534, 537, 540
AclWI GGATC 3 cut(s) 55, 60, 687
AcoI YGGCCR 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 115
AfaI GTAC 2 cut(s) 241, 698
AfiI CCNNNNNNNGG 1 cut(s) 305
AjnI CCWGG 6 cut(s) 160, 217, 274, 373, 645, 689
AleI CACNNNNGTG 3 cut(s) 207, 321, 627
AluBI AGCT 2 cut(s) 359, 425
AluI AGCT 2 cut(s) 359, 425
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 3 cut(s) 55, 60, 687
AlwNI CAGNNNCTG 1 cut(s) 294
AoxI GGCC 3 cut(s) 163, 285, 604
ApaI GGGCCC 1 cut(s) 608
ApeKI GCWGC 2 cut(s) 422, 487
AspLEI GCGC 2 cut(s) 344, 534
AspS9I GGNCC 2 cut(s) 604, 605
AsuC2I CCSGG 1 cut(s) 269
BaeGI GKGCMC 3 cut(s) 225, 608, 662
BalI TGGCCA 1 cut(s) 287
BanII GRGCYC 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 434, 499
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 6 cut(s) 162, 219, 276, 375, 647, 691
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 2 cut(s) 174, 345
BfmI CTRYAG 1 cut(s) 457
BglI GCCNNNNNGGC 1 cut(s) 666
BisI GCNGC 4 cut(s) 423, 488, 535, 538
BlsI GCNGC 4 cut(s) 424, 489, 536, 539
Bme1390I CCNGG 7 cut(s) 162, 219, 269, 276, 375, 647, 691
BmgT120I GGNCC 2 cut(s) 604, 605
BmiI GGNNCC 4 cut(s) 20, 273, 606, 607
BmrFI CCNGG 7 cut(s) 162, 219, 269, 276, 375, 647, 691
BmsI GCATC 2 cut(s) 79, 318
BpiI GAAGAC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 3 cut(s) 218, 374, 689
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 6 cut(s) 162, 219, 276, 375, 647, 691
BseDI CCNNGG 3 cut(s) 218, 374, 689
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMI GCAATG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 534
BseSI GKGCMC 3 cut(s) 225, 608, 662
BseXI GCAGC 2 cut(s) 434, 499
BsgI GTGCAG 1 cut(s) 415
Bsh1236I CGCG 3 cut(s) 87, 342, 534
BshFI GGCC 3 cut(s) 165, 287, 606
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 2 cut(s) 392, 648
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 2 cut(s) 392, 648
BsmI GAATGC 2 cut(s) 185, 534
BsnI GGCC 3 cut(s) 165, 287, 606
Bsp120I GGGCCC 1 cut(s) 604
Bsp1286I GDGCHC 3 cut(s) 225, 608, 662
Bsp143I GATC 5 cut(s) 52, 60, 70, 615, 679
BspACI CCGC 4 cut(s) 85, 534, 537, 540
BspANI GGCC 3 cut(s) 165, 287, 606
BspFNI CGCG 3 cut(s) 87, 342, 534
BspLI GGNNCC 4 cut(s) 20, 273, 606, 607
BspPI GGATC 3 cut(s) 55, 60, 687
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 218, 374, 689
BssMI GATC 5 cut(s) 52, 60, 70, 615, 679
BssNI GRCGYC 1 cut(s) 115
Bst2UI CCWGG 6 cut(s) 162, 219, 276, 375, 647, 691
Bst4CI ACNGT 3 cut(s) 458, 548, 629
BstACI GRCGYC 1 cut(s) 115
BstAPI GCANNNNNTGC 2 cut(s) 150, 399
BstEII GGTNACC 1 cut(s) 542
BstFNI CGCG 3 cut(s) 87, 342, 534
BstHHI GCGC 2 cut(s) 344, 534
BstKTI GATC 5 cut(s) 55, 63, 73, 618, 682
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 5 cut(s) 52, 60, 70, 615, 679
BstMWI GCNNNNNNNGC 3 cut(s) 150, 399, 666
BstNI CCWGG 6 cut(s) 162, 219, 276, 375, 647, 691
BstNSI RCATGY 1 cut(s) 450
BstPI GGTNACC 1 cut(s) 542
BstSCI CCNGG 7 cut(s) 160, 217, 267, 274, 373, 645, 689
BstSFI CTRYAG 1 cut(s) 457
BstSLI GKGCMC 3 cut(s) 225, 608, 662
BstUI CGCG 3 cut(s) 87, 342, 534
BstV1I GCAGC 2 cut(s) 434, 499
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 60
BstXI CCANNNNNNTGG 3 cut(s) 323, 478, 578
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 3 cut(s) 165, 287, 606
BtgZI GCGATG 2 cut(s) 102, 323
CaiI CAGNNNCTG 1 cut(s) 294
CfoI GCGC 2 cut(s) 344, 534
Cfr13I GGNCC 2 cut(s) 604, 605
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 2 cut(s) 240, 697
CviAII CATG 2 cut(s) 283, 447
CviJI RGCY 9 cut(s) 21, 129, 165, 287, 332, 359, 425, 470, 606
CviKI_1 RGCY 9 cut(s) 21, 129, 165, 287, 332, 359, 425, 470, 606
CviQI GTAC 2 cut(s) 240, 697
DpnI GATC 5 cut(s) 54, 62, 72, 617, 681
DpnII GATC 5 cut(s) 52, 60, 70, 615, 679
EaeI YGGCCR 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 608
Eco57I CTGAAG 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 605
EcoO65I GGTNACC 1 cut(s) 542
EcoRII CCWGG 6 cut(s) 160, 217, 274, 373, 645, 689
EcoT38I GRGCYC 1 cut(s) 608
FaeI CATG 2 cut(s) 286, 450
FaqI GGGAC 2 cut(s) 392, 648
FatI CATG 2 cut(s) 282, 446
FauNDI CATATG 1 cut(s) 585
Fnu4HI GCNGC 4 cut(s) 423, 488, 535, 538
FriOI GRGCYC 1 cut(s) 608
Fsp4HI GCNGC 4 cut(s) 423, 488, 535, 538
FspBI CTAG 2 cut(s) 174, 345
GlaI GCGC 2 cut(s) 343, 533
GluI GCNGC 4 cut(s) 423, 488, 535, 538
HaeIII GGCC 3 cut(s) 165, 287, 606
HapII CCGG 1 cut(s) 268
HhaI GCGC 2 cut(s) 344, 534
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 2 cut(s) 286, 450
Hin6I GCGC 2 cut(s) 342, 532
HinP1I GCGC 2 cut(s) 342, 532
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 3 cut(s) 10, 70, 235
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 2 cut(s) 299, 672
HpyCH4III ACNGT 3 cut(s) 458, 548, 629
HpyCH4IV ACGT 2 cut(s) 115, 157
HpyCH4V TGCA 8 cut(s) 92, 144, 153, 194, 354, 393, 422, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 399, 666
HpySE526I ACGT 2 cut(s) 115, 157
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 2 cut(s) 286, 450
HspAI GCGC 2 cut(s) 342, 532
Kzo9I GATC 5 cut(s) 52, 60, 70, 615, 679
LmnI GCTCC 4 cut(s) 18, 30, 36, 364
Lsp1109I GCAGC 2 cut(s) 434, 499
LweI GCATC 2 cut(s) 79, 318
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 2 cut(s) 174, 345
MaeII ACGT 2 cut(s) 115, 157
MaeIII GTNAC 7 cut(s) 200, 278, 290, 449, 542, 548, 620
MalI GATC 5 cut(s) 54, 62, 72, 617, 681
MboI GATC 5 cut(s) 52, 60, 70, 615, 679
MboII GAAGA 1 cut(s) 206
MfeI CAATTG 1 cut(s) 205
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 3 cut(s) 225, 608, 662
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 3 cut(s) 195, 205, 262
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 239
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MslI CAYNNNNRTG 4 cut(s) 207, 321, 627, 655
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 7 cut(s) 162, 219, 269, 276, 375, 647, 691
MunI CAATTG 1 cut(s) 205
Mva1269I GAATGC 2 cut(s) 185, 534
MvaI CCWGG 6 cut(s) 162, 219, 276, 375, 647, 691
MvnI CGCG 3 cut(s) 87, 342, 534
MwoI GCNNNNNNNGC 3 cut(s) 150, 399, 666
NciI CCSGG 1 cut(s) 269
NdeI CATATG 1 cut(s) 585
NdeII GATC 5 cut(s) 52, 60, 70, 615, 679
NlaIII CATG 2 cut(s) 286, 450
NlaIV GGNNCC 4 cut(s) 20, 273, 606, 607
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 4 cut(s) 200, 278, 548, 620
NspI RCATGY 1 cut(s) 450
OliI CACNNNNGTG 3 cut(s) 207, 321, 627
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PctI GAATGC 2 cut(s) 185, 534
PkrI GCNGC 4 cut(s) 424, 489, 536, 539
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
Psp6I CCWGG 6 cut(s) 160, 217, 274, 373, 645, 689
PspEI GGTNACC 1 cut(s) 542
PspGI CCWGG 6 cut(s) 160, 217, 274, 373, 645, 689
PspN4I GGNNCC 4 cut(s) 20, 273, 606, 607
PspOMI GGGCCC 1 cut(s) 604
PspPI GGNCC 2 cut(s) 604, 605
PsrI GAACNNNNNNTAC 2 cut(s) 49, 81
PstNI CAGNNNCTG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 241, 698
RsaNI GTAC 2 cut(s) 240, 697
RseI CAYNNNNRTG 4 cut(s) 207, 321, 627, 655
SatI GCNGC 4 cut(s) 423, 488, 535, 538
Sau3AI GATC 5 cut(s) 52, 60, 70, 615, 679
Sau96I GGNCC 2 cut(s) 604, 605
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 7 cut(s) 162, 219, 269, 276, 375, 647, 691
SduI GDGCHC 3 cut(s) 225, 608, 662
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 2 cut(s) 79, 318
SfcI CTRYAG 1 cut(s) 457
SmiMI CAYNNNNRTG 4 cut(s) 207, 321, 627, 655
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 3 cut(s) 195, 205, 262
SsiI CCGC 4 cut(s) 85, 534, 537, 540
SspMI CTAG 2 cut(s) 174, 345
StyD4I CCNGG 7 cut(s) 160, 217, 267, 274, 373, 645, 689
TaaI ACNGT 3 cut(s) 458, 548, 629
TaiI ACGT 2 cut(s) 118, 160
TasI AATT 3 cut(s) 195, 205, 262
TatI WGTACW 1 cut(s) 239
TauI GCSGC 2 cut(s) 537, 540
TseFI GTSAC 4 cut(s) 200, 278, 548, 620
TseI GCWGC 2 cut(s) 422, 487
Tsp45I GTSAC 4 cut(s) 200, 278, 548, 620
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 2 cut(s) 53, 65
XceI RCATGY 1 cut(s) 450
XspI CTAG 2 cut(s) 174, 345
ZraI GACGTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.