Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Reverse (-)

15078364 .. 15080069

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTGTGAATAGCAGTCAAAGCCCAGAACTAGCCAAAAGATACCACAGCAGAGAACGCACATCTTACCGTGATGCTCCATATCCTAGTGAACGCCGCAGTTATAGGCAAGATTGTCTTTGCAATAAATGTAAACGGCCAGGGCATTTTGCAAGGGATTGCCCGAATATGACTGTCTGCAACAACTGTGGACTTCCAGGCCACATTGCAGCAGAATGCAACTCAACAACTATGTGTTGGAACTGCAAGGAGCCTGGACATCTTGCAAACCAATGTTCTAATAATCCAGTCTGCCATATATGTAGTAAGAAAGGCCACCTGGCTCGCGATTGCTCGAACCCTAGTCCTTCATCCCACGATGCAAGGCTCTGCAACAACTGCTACAAACCGGGTCATATTGCTGTCAATTGCACAAACGAGAAGGCTTGCAATAACTGTCGGAAACCTGGACACCTTGCTCGTGACTGCCCCAACGAACCTGTTTGCCACACCTGCAACATATCAGGTCACGTGGCCCGCCATTGCGCCAAGTCAAGCCTAGCCCCAGACATCAGAGGCCCTTTCCGCGACATCACGTGCCGCAACTGCGGGCTGCCAGGCCATATCAGCCGAGAGTGCATATCGATTGTCATCTGCAACAATTGTGGTGGAATGGGTCACCAAGCTTATGAATGCCCTTCTGCGTTGATGATGTACGGTCGCGGCCTACGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

239

Amino Acids

26.31

Weight (kDa)

8.87

Isoelectric Point (pI)

69.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	500
AccII	CGCG	3 cut(s)	327, 567, 702
AciI	CCGC	6 cut(s)	97, 517, 565, 580, 588, 702
AcoI	YGGCCR	1 cut(s)	137
AcvI	CACGTG	2 cut(s)	511, 576
AfaI	GTAC	1 cut(s)	695
AjnI	CCWGG	6 cut(s)	139, 196, 253, 318, 445, 595
AluBI	AGCT	1 cut(s)	665
AluI	AGCT	1 cut(s)	665
AoxI	GGCC	7 cut(s)	137, 199, 313, 513, 556, 598, 703
ApeKI	GCWGC	2 cut(s)	209, 592
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	514, 557
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	650
BauI	CACGAG	1 cut(s)	459
BbrPI	CACGTG	2 cut(s)	511, 576
BbvI	GCAGC	2 cut(s)	221, 579
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
BcnI	CCSGG	1 cut(s)	390
BfaI	CTAG	4 cut(s)	32, 87, 342, 539
BfuAI	ACCTGC	1 cut(s)	500
BisI	GCNGC	5 cut(s)	97, 210, 580, 593, 703
BlsI	GCNGC	5 cut(s)	98, 211, 581, 594, 704
Bme1390I	CCNGG	7 cut(s)	141, 198, 255, 320, 390, 447, 597
BmgT120I	GGNCC	2 cut(s)	514, 557
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	7 cut(s)	141, 198, 255, 320, 390, 447, 597
BmsI	GCATC	2 cut(s)	64, 349
BpuMI	CCSGG	1 cut(s)	390
Bsa29I	ATCGAT	1 cut(s)	623
BsaAI	YACGTR	3 cut(s)	511, 576, 710
BsaBI	GATNNNNATC	1 cut(s)	629
BsaJI	CCNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	2 cut(s)	204, 520
Bse8I	GATNNNNATC	1 cut(s)	629
BseBI	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	350
BseJI	GATNNNNATC	1 cut(s)	629
BseMI	GCAATG	2 cut(s)	204, 520
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	221, 579
Bsh1236I	CGCG	3 cut(s)	327, 567, 702
Bsh1285I	CGRYCG	1 cut(s)	700
BshFI	GGCC	7 cut(s)	139, 201, 315, 515, 558, 600, 705
BshVI	ATCGAT	1 cut(s)	623
BsiEI	CGRYCG	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	389
BsmI	GAATGC	2 cut(s)	221, 677
BsnI	GGCC	7 cut(s)	139, 201, 315, 515, 558, 600, 705
Bsp68I	TCGCGA	1 cut(s)	327
BspACI	CCGC	6 cut(s)	97, 517, 565, 580, 588, 702
BspANI	GGCC	7 cut(s)	139, 201, 315, 515, 558, 600, 705
BspDI	ATCGAT	1 cut(s)	623
BspFNI	CGCG	3 cut(s)	327, 567, 702
BspLI	GGNNCC	1 cut(s)	252
BspMI	ACCTGC	1 cut(s)	500
BsrDI	GCAATG	2 cut(s)	204, 520
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	140
BssSI	CACGAG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
Bst4CI	ACNGT	5 cut(s)	71, 175, 188, 437, 698
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstBAI	YACGTR	3 cut(s)	511, 576, 710
BstC8I	GCNNGC	4 cut(s)	325, 427, 517, 590
BstEII	GGTNACC	1 cut(s)	656
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	3 cut(s)	327, 567, 702
BstHHI	GCGC	1 cut(s)	527
BstMCI	CGRYCG	1 cut(s)	700
BstMWI	GCNNNNNNNGC	8 cut(s)	21, 57, 378, 492, 564, 585, 606, 615
BstNI	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
BstPI	GGTNACC	1 cut(s)	656
BstSCI	CCNGG	7 cut(s)	139, 196, 253, 318, 388, 445, 595
BstSNI	TACGTA	1 cut(s)	710
BstUI	CGCG	3 cut(s)	327, 567, 702
BstV1I	GCAGC	2 cut(s)	221, 579
Bsu15I	ATCGAT	1 cut(s)	623
BsuRI	GGCC	7 cut(s)	139, 201, 315, 515, 558, 600, 705
BsuTUI	ATCGAT	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	350
BtuMI	TCGCGA	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	4 cut(s)	325, 427, 517, 590
CfoI	GCGC	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	514, 557
ClaI	ATCGAT	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	694
CspCI	CAANNNNNGTGG	6 cut(s)	169, 204, 625, 628, 660, 663
CviQI	GTAC	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	137
Eco105I	TACGTA	1 cut(s)	710
Eco72I	CACGTG	2 cut(s)	511, 576
Eco91I	GGTNACC	1 cut(s)	656
EcoO109I	RGGNCCY	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	656
EcoRII	CCWGG	6 cut(s)	139, 196, 253, 318, 445, 595
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FauI	CCCGC	2 cut(s)	524, 581
Fnu4HI	GCNGC	5 cut(s)	97, 210, 580, 593, 703
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	5 cut(s)	97, 210, 580, 593, 703
FspBI	CTAG	4 cut(s)	32, 87, 342, 539
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	5 cut(s)	97, 210, 580, 593, 703
HaeIII	GGCC	7 cut(s)	139, 201, 315, 515, 558, 600, 705
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	527
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	663
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	3 cut(s)	92, 134, 191
Hpy188I	TCNGA	2 cut(s)	441, 554
Hpy188III	TCNNGA	2 cut(s)	326, 461
Hpy8I	GTNNAC	3 cut(s)	92, 134, 191
HpyAV	CCTTC	3 cut(s)	357, 415, 687
HpyCH4III	ACNGT	5 cut(s)	71, 175, 188, 437, 698
HpyCH4IV	ACGT	3 cut(s)	510, 575, 709
HpyF10VI	GCNNNNNNNGC	8 cut(s)	21, 57, 378, 492, 564, 585, 606, 615
HpySE526I	ACGT	3 cut(s)	510, 575, 709
HspAI	GCGC	1 cut(s)	525
LmnI	GCTCC	2 cut(s)	82, 250
Lsp1109I	GCAGC	2 cut(s)	221, 579
LweI	GCATC	2 cut(s)	64, 349
MaeI	CTAG	4 cut(s)	32, 87, 342, 539
MaeII	ACGT	3 cut(s)	510, 575, 709
MaeIII	GTNAC	3 cut(s)	461, 506, 656
MfeI	CAATTG	2 cut(s)	406, 640
MluCI	AATT	2 cut(s)	406, 640
MmeI	TCCRAC	2 cut(s)	218, 419
MnlI	CCTC	1 cut(s)	548
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	7 cut(s)	141, 198, 255, 320, 390, 447, 597
MunI	CAATTG	2 cut(s)	406, 640
Mva1269I	GAATGC	2 cut(s)	221, 677
MvaI	CCWGG	6 cut(s)	141, 198, 255, 320, 447, 597
MvnI	CGCG	3 cut(s)	327, 567, 702
MwoI	GCNNNNNNNGC	8 cut(s)	21, 57, 378, 492, 564, 585, 606, 615
NciI	CCSGG	1 cut(s)	390
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	635
NmuCI	GTSAC	3 cut(s)	461, 506, 656
NruI	TCGCGA	1 cut(s)	327
PaqCI	CACCTGC	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	706
PctI	GAATGC	2 cut(s)	221, 677
PkrI	GCNGC	5 cut(s)	98, 211, 581, 594, 704
PmaCI	CACGTG	2 cut(s)	511, 576
PmlI	CACGTG	2 cut(s)	511, 576
Ppu21I	YACGTR	3 cut(s)	511, 576, 710
Psp6I	CCWGG	6 cut(s)	139, 196, 253, 318, 445, 595
PspCI	CACGTG	2 cut(s)	511, 576
PspEI	GGTNACC	1 cut(s)	656
PspGI	CCWGG	6 cut(s)	139, 196, 253, 318, 445, 595
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	514, 557
RruI	TCGCGA	1 cut(s)	327
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
SatI	GCNGC	5 cut(s)	97, 210, 580, 593, 703
Sau96I	GGNCC	2 cut(s)	514, 557
ScrFI	CCNGG	7 cut(s)	141, 198, 255, 320, 390, 447, 597
SfaNI	GCATC	2 cut(s)	64, 349
SnaBI	TACGTA	1 cut(s)	710
Sse9I	AATT	2 cut(s)	406, 640
SsiI	CCGC	6 cut(s)	97, 517, 565, 580, 588, 702
SspMI	CTAG	4 cut(s)	32, 87, 342, 539
StyD4I	CCNGG	7 cut(s)	139, 196, 253, 318, 388, 445, 595
TaaI	ACNGT	5 cut(s)	71, 175, 188, 437, 698
TaiI	ACGT	3 cut(s)	513, 578, 712
TaqI	TCGA	2 cut(s)	335, 623
TasI	AATT	2 cut(s)	406, 640
TauI	GCSGC	3 cut(s)	99, 582, 705
TseFI	GTSAC	3 cut(s)	461, 506, 656
TseI	GCWGC	2 cut(s)	209, 592
Tsp45I	GTSAC	3 cut(s)	461, 506, 656
TspDTI	ATGAA	2 cut(s)	339, 684
XspI	CTAG	4 cut(s)	32, 87, 342, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.