Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Forward (+)

10773051 .. 10776560

Gene Structure 3510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGCCAAAGCCCCTCACGAGCCAGGAGGTTTCGCAGCAGCGAACGTTCATCTTACCGTGATGCCCCATATCCCAGGGAGCGCCGTGTTAATAGGAATGATTTTCTTTGCAACAAATGTAAACGACCAGGGCATTTTGCCAGGGATTGCCCGAATATGACTGTCTGCAACAACTGTGGACTTCCTGGCCACATTGCTGCTGAATGCAACTCGACCACTACTTGTTGGAACTGCAAGGAGCCTGGACATCTTGCAAGCCAATGCCCCAACGATCCAGTCTGCCATATGTGCGGCAAGATGGGTCACCTTGCTCGTGATTGCTCAAGCCCATCTCTTCCATCCCATGATGCGAGGCTATGCAACAACTGCTACAAGCCAGGTCACATTGCAGTCACTTGCACCAACGAGAAGGCATGCAACAACTGCCGCAAGCCAGGCCACCTCGCCCGCGACTGCCCCAATGAACCCATCTGCAACATCTGCAACATATCAGGCCACGTGGCCCGTCACTGCCCCAAGTCAGGATCAAACATGGGAGGAGGAGGAGGAGGAGGAGCAGGCCCTTTCCGTGACATCATCTGCCGTAACTGCGGCCAGCCAGGGCACGTCAGCCGCGAGTGTGTGTCCATTGTCATCTGCAACAACTGCGGCGGAAGGGGTCACCAAGCTTATGAGTGCCCTTCCGCCTTGATGTATGATCGCGGCGTCCGTAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

239

Amino Acids

26.1

Weight (kDa)

8.96

Isoelectric Point (pI)

72.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	37 - 52	2.9e-06	Zinc knuckle
zf-CCHC	PF00098	74 - 90	2.8e-06	Zinc knuckle
zf-CCHC	PF00098	138 - 154	2.2e-06	Zinc knuckle
zf-CCHC	PF00098	193 - 207	9.1e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	450, 615, 702
AciI	CCGC	9 cut(s)	291, 427, 448, 591, 613, 648, 651, 684, 702
AclI	AACGTT	1 cut(s)	46
AclWI	GGATC	2 cut(s)	266, 532
AcoI	YGGCCR	2 cut(s)	187, 592
AcvI	CACGTG	1 cut(s)	499
AcyI	GRCGYC	1 cut(s)	705
AfiI	CCNNNNNNNGG	1 cut(s)	521
AjiI	CACGTC	1 cut(s)	607
AjnI	CCWGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 598
AluBI	AGCT	1 cut(s)	668
AluI	AGCT	1 cut(s)	668
AlwI	GGATC	2 cut(s)	266, 532
AoxI	GGCC	6 cut(s)	187, 436, 493, 501, 559, 592
ApeKI	GCWGC	3 cut(s)	36, 39, 197
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	502, 560
AsuHPI	GGTGA	2 cut(s)	296, 653
BaeGI	GKGCMC	2 cut(s)	606, 680
BalI	TGGCCA	1 cut(s)	189
BauI	CACGAG	2 cut(s)	18, 312
BbrPI	CACGTG	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	48, 51, 184
BccI	CCATC	4 cut(s)	292, 337, 346, 476
BceAI	ACGGC	2 cut(s)	69, 567
BciT130I	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 600
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	9 cut(s)	37, 40, 198, 292, 427, 592, 613, 649, 703
BlsI	GCNGC	9 cut(s)	38, 41, 199, 293, 428, 593, 614, 650, 704
Bme1390I	CCNGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 600
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	502, 560
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 600
BmsI	GCATC	2 cut(s)	52, 337
BpuEI	CTTGAG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	499
BsaHI	GRCGYC	1 cut(s)	705
BsaJI	CCNNGG	5 cut(s)	74, 75, 128, 141, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	2 cut(s)	192, 384
BseBI	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 600
BseDI	CCNNGG	5 cut(s)	74, 75, 128, 141, 599
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	2 cut(s)	192, 384
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	6 cut(s)	552, 555, 558, 561, 564, 567
BseSI	GKGCMC	2 cut(s)	606, 680
BseXI	GCAGC	3 cut(s)	48, 51, 184
Bsh1236I	CGCG	3 cut(s)	450, 615, 702
BshFI	GGCC	6 cut(s)	189, 438, 495, 503, 561, 594
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	6 cut(s)	189, 438, 495, 503, 561, 594
Bsp1286I	GDGCHC	2 cut(s)	606, 680
Bsp143I	GATC	3 cut(s)	271, 524, 697
BspACI	CCGC	9 cut(s)	291, 427, 448, 591, 613, 648, 651, 684, 702
BspANI	GGCC	6 cut(s)	189, 438, 495, 503, 561, 594
BspFNI	CGCG	3 cut(s)	450, 615, 702
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	266, 532
BsrDI	GCAATG	2 cut(s)	192, 384
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	5 cut(s)	74, 75, 128, 141, 599
BssMI	GATC	3 cut(s)	271, 524, 697
BssNI	GRCGYC	1 cut(s)	705
BssSI	CACGAG	2 cut(s)	18, 312
Bst2BI	CACGAG	2 cut(s)	18, 312
Bst2UI	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 600
Bst4CI	ACNGT	3 cut(s)	59, 163, 176
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	705
BstAPI	GCANNNNNTGC	4 cut(s)	366, 423, 480, 645
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	6 cut(s)	256, 415, 431, 448, 559, 596
BstEII	GGTNACC	2 cut(s)	302, 659
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	3 cut(s)	450, 615, 702
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	274, 527, 700
BstMBI	GATC	3 cut(s)	271, 524, 697
BstMWI	GCNNNNNNNGC	7 cut(s)	288, 366, 423, 435, 480, 588, 645
BstNI	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 600
BstNSI	RCATGY	1 cut(s)	417
BstPI	GGTNACC	2 cut(s)	302, 659
BstSCI	CCNGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 598
BstSLI	GKGCMC	2 cut(s)	606, 680
BstUI	CGCG	3 cut(s)	450, 615, 702
BstV1I	GCAGC	3 cut(s)	48, 51, 184
BsuRI	GGCC	6 cut(s)	189, 438, 495, 503, 561, 594
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	508
Cac8I	GCNNGC	6 cut(s)	256, 415, 431, 448, 559, 596
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	502, 560
CseI	GACGC	1 cut(s)	694
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	3 cut(s)	344, 414, 532
DpnI	GATC	3 cut(s)	273, 526, 699
DpnII	GATC	3 cut(s)	271, 524, 697
EaeI	YGGCCR	2 cut(s)	187, 592
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	2 cut(s)	666, 673
Eco72I	CACGTG	1 cut(s)	499
Eco91I	GGTNACC	2 cut(s)	302, 659
EcoO109I	RGGNCCY	1 cut(s)	560
EcoO65I	GGTNACC	2 cut(s)	302, 659
EcoRII	CCWGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 598
FaeI	CATG	3 cut(s)	347, 417, 535
FatI	CATG	3 cut(s)	343, 413, 531
FauI	CCCGC	1 cut(s)	455
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	9 cut(s)	37, 40, 198, 292, 427, 592, 613, 649, 703
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	9 cut(s)	37, 40, 198, 292, 427, 592, 613, 649, 703
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	9 cut(s)	37, 40, 198, 292, 427, 592, 613, 649, 703
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	6 cut(s)	189, 438, 495, 503, 561, 594
HgaI	GACGC	1 cut(s)	694
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	705
Hin1II	CATG	3 cut(s)	347, 417, 535
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	666
HphI	GGTGA	2 cut(s)	296, 653
Hpy166II	GTNNAC	2 cut(s)	122, 179
Hpy188III	TCNNGA	3 cut(s)	18, 314, 522
Hpy8I	GTNNAC	2 cut(s)	122, 179
HpyAV	CCTTC	3 cut(s)	403, 648, 690
HpyCH4III	ACNGT	3 cut(s)	59, 163, 176
HpyCH4IV	ACGT	3 cut(s)	46, 498, 606
HpyF10VI	GCNNNNNNNGC	7 cut(s)	288, 366, 423, 435, 480, 588, 645
HpySE526I	ACGT	3 cut(s)	46, 498, 606
Hsp92I	GRCGYC	1 cut(s)	705
Hsp92II	CATG	3 cut(s)	347, 417, 535
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	271, 524, 697
LmnI	GCTCC	3 cut(s)	79, 238, 554
Lsp1109I	GCAGC	3 cut(s)	48, 51, 184
LweI	GCATC	2 cut(s)	52, 337
MaeII	ACGT	3 cut(s)	46, 498, 606
MaeIII	GTNAC	7 cut(s)	302, 380, 391, 506, 569, 584, 659
MalI	GATC	3 cut(s)	273, 526, 699
MboI	GATC	3 cut(s)	271, 524, 697
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	606, 680
MlsI	TGGCCA	1 cut(s)	189
MluNI	TGGCCA	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	206
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	189
MspR9I	CCNGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 600
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 600
MvnI	CGCG	3 cut(s)	450, 615, 702
MwoI	GCNNNNNNNGC	7 cut(s)	288, 366, 423, 435, 480, 588, 645
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	3 cut(s)	271, 524, 697
NlaIII	CATG	3 cut(s)	347, 417, 535
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	6 cut(s)	302, 380, 391, 506, 569, 659
NspI	RCATGY	1 cut(s)	417
PaeI	GCATGC	1 cut(s)	417
PasI	CCCWGGG	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	2 cut(s)	612, 706
PctI	GAATGC	1 cut(s)	209
PkrI	GCNGC	9 cut(s)	38, 41, 199, 293, 428, 593, 614, 650, 704
PmaCI	CACGTG	1 cut(s)	499
PmlI	CACGTG	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	499
Psp1406I	AACGTT	1 cut(s)	46
Psp6I	CCWGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 598
PspCI	CACGTG	1 cut(s)	499
PspEI	GGTNACC	2 cut(s)	302, 659
PspGI	CCWGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 598
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	502, 560
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	9 cut(s)	37, 40, 198, 292, 427, 592, 613, 649, 703
Sau3AI	GATC	3 cut(s)	271, 524, 697
Sau96I	GGNCC	2 cut(s)	502, 560
ScrFI	CCNGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 600
SduI	GDGCHC	2 cut(s)	606, 680
SetI	ASST	9 cut(s)	32, 49, 309, 382, 444, 501, 609, 670, 716
SfaNI	GCATC	2 cut(s)	52, 337
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SphI	GCATGC	1 cut(s)	417
SsiI	CCGC	9 cut(s)	291, 427, 448, 591, 613, 648, 651, 684, 702
StyD4I	CCNGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 598
TaaI	ACNGT	3 cut(s)	59, 163, 176
TaiI	ACGT	3 cut(s)	49, 501, 609
TaqI	TCGA	1 cut(s)	212
TauI	GCSGC	6 cut(s)	294, 429, 594, 615, 651, 705
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	6 cut(s)	302, 380, 391, 506, 569, 659
TseI	GCWGC	3 cut(s)	36, 39, 197
Tsp45I	GTSAC	6 cut(s)	302, 380, 391, 506, 569, 659
TspDTI	ATGAA	2 cut(s)	39, 477
TspGWI	ACGGA	2 cut(s)	557, 698
TspRI	CASTG	1 cut(s)	515
XceI	RCATGY	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.