Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Reverse (-)

47931620 .. 47936351

Gene Structure 4732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGTTCAGACAGCAGGAGCCTAAGCAGGAGCAGGAGCAGGAGCCCTAAGGATCGTAAGATCCGTTCTGATCGCTTTTCCTATCGTGATGCACCTTACAGGAGAGACGGTCGTCGGGGTGGTGGTTTCAGCCGAGACAATCTCTGCAAGAACTGCAAAAGACCTGGCCATTTTGCTAGAGAATGCCCTAATGTTGCAATTTGTCACAATTGTGGTCTTCCCGGGCACATTGCTTCGGAGTGTACCACAAAGTCACTATGTTGGAATTGCCGTGAACCTGGTCACATGGCCAGTAACTGCCCGAATGAAGGCATCTGCCACACCTGTGGCAAGGCTGGACACCGTGCTAGAGACTGCACTGCTGCCCCAATGCCACCTGGGGACTTAAGGTTGTGCAACAACTGCTACAAGCAGGGTCATATTGCAGTCGACTGCACAAATGAGAAGGCATGCAACAACTGTAGGAAGACAGGTCACCTGGCGCGTGATTGCCCAAATGAACCCATCTGTAACATGTGCAATGTATCTGGGCATGTGGCCAGGCAGTGCCCCAGAGCCAATGTTTTGGCAGAGAGGGGAGGAGGAGGTGGTGGTGGTGGTGGAGTTCGCAGCAGTAGCGGCGGTGGCTACCATCGTGACATTGTATGTAGGAACTGCCAGCAACTTGGGCATATGAGCAGGGATTGCATGGGCCCCTTGATGATCTGTCATAACTGTGGGGGCGTGGACACCTGGCATATGAGTGCCCTTCTGGTAGGTTCATGGATCGCTACCCCAGGAGGTACTGAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

264

Amino Acids

28.58

Weight (kDa)

9.04

Isoelectric Point (pI)

72.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	48 - 64	4.6e-06	Zinc knuckle
zf-CCHC	PF00098	87 - 102	2.5e-06	Zinc knuckle
zf-CCHC	PF00098	150 - 166	4.3e-06	Zinc knuckle
zf-CCHC	PF00098	215 - 229	1e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	1 cut(s)	484
AciI	CCGC	2 cut(s)	618, 621
AclWI	GGATC	3 cut(s)	55, 60, 773
AcoI	YGGCCR	3 cut(s)	166, 288, 537
AfaI	GTAC	3 cut(s)	244, 784, 791
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflII	CTTAAG	1 cut(s)	385
AflIII	ACRYGT	1 cut(s)	513
AjnI	CCWGG	7 cut(s)	163, 277, 376, 477, 539, 731, 775
AleI	CACNNNNGTG	2 cut(s)	210, 324
Alw26I	GTCTC	3 cut(s)	99, 129, 345
AlwI	GGATC	3 cut(s)	55, 60, 773
AlwNI	CAGNNNCTG	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	4 cut(s)	166, 288, 537, 691
ApaI	GGGCCC	1 cut(s)	695
ApeKI	GCWGC	2 cut(s)	362, 609
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	2 cut(s)	691, 692
AsuC2I	CCSGG	2 cut(s)	222, 223
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	4 cut(s)	228, 551, 695, 748
BalI	TGGCCA	3 cut(s)	168, 290, 539
BanII	GRGCYC	2 cut(s)	47, 695
BbsI	GAAGAC	2 cut(s)	209, 473
BbvI	GCAGC	2 cut(s)	349, 621
BccI	CCATC	2 cut(s)	512, 639
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 733, 777
BcnI	CCSGG	2 cut(s)	222, 223
BcoDI	GTCTC	3 cut(s)	99, 129, 345
BfaI	CTAG	2 cut(s)	177, 348
BfmI	CTRYAG	1 cut(s)	460
BfrI	CTTAAG	1 cut(s)	385
BisI	GCNGC	3 cut(s)	363, 610, 619
BlsI	GCNGC	3 cut(s)	364, 611, 620
BmcAI	AGTACT	1 cut(s)	791
Bme1390I	CCNGG	9 cut(s)	165, 222, 223, 279, 378, 479, 541, 733, 777
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	691, 692
BmiI	GGNNCC	4 cut(s)	20, 44, 693, 694
BmrFI	CCNGG	9 cut(s)	165, 222, 223, 279, 378, 479, 541, 733, 777
BmsI	GCATC	2 cut(s)	79, 321
BoxI	GACNNNNGTC	1 cut(s)	111
BpiI	GAAGAC	2 cut(s)	209, 473
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	2 cut(s)	222, 223
BsaJI	CCNNGG	3 cut(s)	221, 377, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	291
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	2 cut(s)	228, 526
BseBI	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 733, 777
BseDI	CCNNGG	3 cut(s)	221, 377, 775
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	2 cut(s)	228, 526
BseMII	CTCAG	1 cut(s)	777
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	594, 597
BseSI	GKGCMC	4 cut(s)	228, 551, 695, 748
BseXI	GCAGC	2 cut(s)	349, 621
BsgI	GTGCAG	2 cut(s)	340, 418
Bsh1236I	CGCG	1 cut(s)	484
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	4 cut(s)	168, 290, 539, 693
BsiEI	CGRYCG	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	3 cut(s)	99, 129, 345
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	168, 290, 539, 693
BsoBI	CYCGRG	1 cut(s)	221
Bsp120I	GGGCCC	1 cut(s)	691
Bsp1286I	GDGCHC	5 cut(s)	47, 228, 551, 695, 748
Bsp143I	GATC	5 cut(s)	52, 60, 70, 702, 765
BspACI	CCGC	2 cut(s)	618, 621
BspANI	GGCC	4 cut(s)	168, 290, 539, 693
BspCNI	CTCAG	1 cut(s)	778
BspFNI	CGCG	1 cut(s)	484
BspLI	GGNNCC	4 cut(s)	20, 44, 693, 694
BspPI	GGATC	3 cut(s)	55, 60, 773
BspTI	CTTAAG	1 cut(s)	385
BsrDI	GCAATG	2 cut(s)	228, 526
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	221, 377, 775
BssMI	GATC	5 cut(s)	52, 60, 70, 702, 765
Bst2UI	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 733, 777
Bst4CI	ACNGT	4 cut(s)	110, 344, 461, 716
BstAFI	CTTAAG	1 cut(s)	385
BstAPI	GCANNNNNTGC	3 cut(s)	153, 402, 684
BstC8I	GCNNGC	2 cut(s)	451, 659
BstDEI	CTNAG	3 cut(s)	23, 48, 786
BstEII	GGTNACC	1 cut(s)	473
BstFNI	CGCG	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	5 cut(s)	55, 63, 73, 705, 768
BstMAI	GTCTC	3 cut(s)	99, 129, 345
BstMBI	GATC	5 cut(s)	52, 60, 70, 702, 765
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	7 cut(s)	153, 402, 615, 618, 624, 667, 684
BstNI	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 733, 777
BstNSI	RCATGY	3 cut(s)	453, 517, 536
BstPAI	GACNNNNGTC	1 cut(s)	111
BstPI	GGTNACC	1 cut(s)	473
BstSCI	CCNGG	9 cut(s)	163, 220, 221, 277, 376, 477, 539, 731, 775
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	4 cut(s)	228, 551, 695, 748
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	2 cut(s)	349, 621
BstV2I	GAAGAC	2 cut(s)	209, 473
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	3 cut(s)	326, 565, 665
BstYI	RGATCY	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	4 cut(s)	168, 290, 539, 693
BtsI	GCAGTG	2 cut(s)	357, 551
BtsIMutI	CAGTG	2 cut(s)	357, 551
Cac8I	GCNNGC	2 cut(s)	451, 659
CaiI	CAGNNNCTG	1 cut(s)	297
CfoI	GCGC	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	691, 692
Cfr9I	CCCGGG	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	243, 783, 790
CviAII	CATG	6 cut(s)	286, 450, 514, 533, 688, 762
CviQI	GTAC	3 cut(s)	243, 783, 790
DdeI	CTNAG	3 cut(s)	23, 48, 786
DpnI	GATC	5 cut(s)	54, 62, 72, 704, 767
DpnII	GATC	5 cut(s)	52, 60, 70, 702, 765
EaeI	YGGCCR	3 cut(s)	166, 288, 537
Eco24I	GRGCYC	2 cut(s)	47, 695
Eco81I	CCTNAGG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	692
EcoO65I	GGTNACC	1 cut(s)	473
EcoRII	CCWGG	7 cut(s)	163, 277, 376, 477, 539, 731, 775
EcoT38I	GRGCYC	2 cut(s)	47, 695
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	6 cut(s)	289, 453, 517, 536, 691, 765
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	6 cut(s)	285, 449, 513, 532, 687, 761
FauNDI	CATATG	2 cut(s)	672, 738
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	363, 610, 619
FriOI	GRGCYC	2 cut(s)	47, 695
Fsp4HI	GCNGC	3 cut(s)	363, 610, 619
FspBI	CTAG	2 cut(s)	177, 348
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	3 cut(s)	363, 610, 619
HaeIII	GGCC	4 cut(s)	168, 290, 539, 693
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	6 cut(s)	289, 453, 517, 536, 691, 765
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	4 cut(s)	243, 275, 430, 727
Hpy188I	TCNGA	3 cut(s)	10, 70, 238
Hpy188III	TCNNGA	2 cut(s)	86, 635
Hpy8I	GTNNAC	4 cut(s)	243, 275, 430, 727
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	3 cut(s)	302, 439, 758
HpyCH4III	ACNGT	4 cut(s)	110, 344, 461, 716
HpyF10VI	GCNNNNNNNGC	7 cut(s)	153, 402, 615, 618, 624, 667, 684
HpyF3I	CTNAG	3 cut(s)	23, 48, 786
Hsp92II	CATG	6 cut(s)	289, 453, 517, 536, 691, 765
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	5 cut(s)	52, 60, 70, 702, 765
LmnI	GCTCC	4 cut(s)	18, 30, 36, 42
Lsp1109I	GCAGC	2 cut(s)	349, 621
LweI	GCATC	2 cut(s)	79, 321
MabI	ACCWGGT	1 cut(s)	277
MaeI	CTAG	2 cut(s)	177, 348
MaeIII	GTNAC	7 cut(s)	203, 252, 281, 293, 473, 509, 635
MalI	GATC	5 cut(s)	54, 62, 72, 704, 767
MboI	GATC	5 cut(s)	52, 60, 70, 702, 765
MboII	GAAGA	2 cut(s)	209, 478
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	5 cut(s)	47, 228, 551, 695, 748
MlsI	TGGCCA	3 cut(s)	168, 290, 539
MluCI	AATT	3 cut(s)	198, 208, 265
MluNI	TGGCCA	3 cut(s)	168, 290, 539
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	5 cut(s)	567, 572, 575, 578, 773
Mox20I	TGGCCA	3 cut(s)	168, 290, 539
MscI	TGGCCA	3 cut(s)	168, 290, 539
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	4 cut(s)	210, 324, 714, 741
Msp20I	TGGCCA	3 cut(s)	168, 290, 539
MspCI	CTTAAG	1 cut(s)	385
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	9 cut(s)	165, 222, 223, 279, 378, 479, 541, 733, 777
MunI	CAATTG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 733, 777
MvnI	CGCG	1 cut(s)	484
MwoI	GCNNNNNNNGC	7 cut(s)	153, 402, 615, 618, 624, 667, 684
NciI	CCSGG	2 cut(s)	222, 223
NdeI	CATATG	2 cut(s)	672, 738
NdeII	GATC	5 cut(s)	52, 60, 70, 702, 765
NlaIII	CATG	6 cut(s)	289, 453, 517, 536, 691, 765
NlaIV	GGNNCC	4 cut(s)	20, 44, 693, 694
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	5 cut(s)	203, 252, 281, 473, 635
NspI	RCATGY	3 cut(s)	453, 517, 536
OliI	CACNNNNGTG	2 cut(s)	210, 324
PaeI	GCATGC	1 cut(s)	453
PciI	ACATGT	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	364, 611, 620
PscI	ACATGT	1 cut(s)	513
PshAI	GACNNNNGTC	1 cut(s)	111
Psp6I	CCWGG	7 cut(s)	163, 277, 376, 477, 539, 731, 775
PspEI	GGTNACC	1 cut(s)	473
PspGI	CCWGG	7 cut(s)	163, 277, 376, 477, 539, 731, 775
PspN4I	GGNNCC	4 cut(s)	20, 44, 693, 694
PspOMI	GGGCCC	1 cut(s)	691
PspPI	GGNCC	2 cut(s)	691, 692
PsrI	GAACNNNNNNTAC	2 cut(s)	49, 81
PstNI	CAGNNNCTG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	3 cut(s)	244, 784, 791
RsaNI	GTAC	3 cut(s)	243, 783, 790
RseI	CAYNNNNRTG	4 cut(s)	210, 324, 714, 741
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	3 cut(s)	363, 610, 619
Sau3AI	GATC	5 cut(s)	52, 60, 70, 702, 765
Sau96I	GGNCC	2 cut(s)	691, 692
ScaI	AGTACT	1 cut(s)	791
ScrFI	CCNGG	9 cut(s)	165, 222, 223, 279, 378, 479, 541, 733, 777
SduI	GDGCHC	5 cut(s)	47, 228, 551, 695, 748
SexAI	ACCWGGT	1 cut(s)	277
SfaNI	GCATC	2 cut(s)	79, 321
SfcI	CTRYAG	1 cut(s)	460
SmaI	CCCGGG	1 cut(s)	223
SmiMI	CAYNNNNRTG	4 cut(s)	210, 324, 714, 741
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	3 cut(s)	198, 208, 265
SsiI	CCGC	2 cut(s)	618, 621
SspMI	CTAG	2 cut(s)	177, 348
StyD4I	CCNGG	9 cut(s)	163, 220, 221, 277, 376, 477, 539, 731, 775
TaaI	ACNGT	4 cut(s)	110, 344, 461, 716
TaqI	TCGA	1 cut(s)	429
TasI	AATT	3 cut(s)	198, 208, 265
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	1 cut(s)	621
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	2 cut(s)	364, 551
TseFI	GTSAC	5 cut(s)	203, 252, 281, 473, 635
TseI	GCWGC	2 cut(s)	362, 609
Tsp45I	GTSAC	5 cut(s)	203, 252, 281, 473, 635
TspDTI	ATGAA	3 cut(s)	321, 513, 750
TspGWI	ACGGA	1 cut(s)	53
TspMI	CCCGGG	1 cut(s)	221
TspRI	CASTG	2 cut(s)	364, 551
Vha464I	CTTAAG	1 cut(s)	385
XceI	RCATGY	3 cut(s)	453, 517, 536
XmaI	CCCGGG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	177, 348
ZrmI	AGTACT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.