Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Forward (+)

5226838 .. 5229875

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAGTTCAGACAGCAGGAGCCGGAGCAGGAGCAGGAGCAGGAGCCCTTTGGATCGGAAGATCCGTTCTGATCGCTTTTCCTACCGTGATGCACCTTACAGGAGAGATGGAGGACGTCGGGGTTTCAGCCGAGACAATCTGTGCAAGAACTGCAAACGGCCAGGTCATTTTGCTAGAGAATGCCCGAATGTTGCCATTTGTCACAATTGTGGTCTTCCTGGGCACATTGCTTCAGAGTGTACAACAAAGTCACTATGTTGGAATTGCCGGGAACCGGGTCACATGGCTAGTAACTGCCCAAATGAAGGCATTTGCCACACCTGTGGTAAGGCTGGACATCGCGCCAGAGACTGCACAGCTCCCCCAATGCCACCTGGGGACTTGAGGTTGTGCAACAACTGCTACAAGCAGGGTCATATTGCAGCTGACTGCACAAATGAGAAGGCATGTAACAACTGTAGGAAGACAGGTCACCTGGCACGTGATTGCCCGAATGAACCCATCTGCAACTTATGCAATGTATCTGGCCACGTGGCTAGACAGTGCCCTAGAGCCAATGCTTTGGGAGAGCGTGGAGGTGGAGGAGGTGGTGGTGGTGGTGGTGGAATGGGTGGACGCGGAGGCAGTTACCGTGACGTTGTATGTAGGAACTGCCAGCAACTTGGCCATATGAGCAGGGATTGCATGGGCCCCTTGATGATATGTCACAACTGTGGGGGACGAGGGCACCTGGCATACGAGTGCCCTTCTGGAAGATTCATGGACCGCTACCCCAGGAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

262

Amino Acids

28.51

Weight (kDa)

9.27

Isoelectric Point (pI)

75.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	726
AccII	CGCG	2 cut(s)	342, 618
AciI	CCGC	2 cut(s)	618, 766
AclWI	GGATC	2 cut(s)	55, 60
AcoI	YGGCCR	3 cut(s)	158, 526, 664
AcuI	CTGAAG	1 cut(s)	216
AcvI	CACGTG	2 cut(s)	482, 532
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	2 cut(s)	241, 782
AfiI	CCNNNNNNNGG	2 cut(s)	274, 305
AjnI	CCWGG	6 cut(s)	160, 217, 373, 474, 729, 773
AleI	CACNNNNGTG	3 cut(s)	207, 321, 711
AloI	GAACNNNNNNTCC	2 cut(s)	49, 81
AluBI	AGCT	2 cut(s)	359, 425
AluI	AGCT	2 cut(s)	359, 425
Alw26I	GTCTC	2 cut(s)	126, 342
AlwI	GGATC	2 cut(s)	55, 60
AlwNI	CAGNNNCTG	1 cut(s)	351
AoxI	GGCC	4 cut(s)	158, 526, 664, 688
ApaI	GGGCCC	1 cut(s)	692
ApeKI	GCWGC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	3 cut(s)	688, 689, 763
AsuC2I	CCSGG	2 cut(s)	269, 276
AsuHPI	GGTGA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	763
BaeGI	GKGCMC	5 cut(s)	225, 548, 692, 729, 746
BalI	TGGCCA	2 cut(s)	528, 666
BanI	GGYRCC	1 cut(s)	726
BanII	GRGCYC	2 cut(s)	47, 692
BbrPI	CACGTG	2 cut(s)	482, 532
BbsI	GAAGAC	2 cut(s)	206, 470
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	2 cut(s)	101, 509
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	6 cut(s)	162, 219, 375, 476, 731, 775
BcnI	CCSGG	2 cut(s)	269, 276
BcoDI	GTCTC	2 cut(s)	126, 342
BfaI	CTAG	4 cut(s)	174, 288, 537, 549
BfmI	CTRYAG	1 cut(s)	457
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	8 cut(s)	162, 219, 269, 276, 375, 476, 731, 775
Bme18I	GGWCC	1 cut(s)	763
BmgT120I	GGNCC	3 cut(s)	688, 689, 763
BmiI	GGNNCC	6 cut(s)	20, 44, 273, 690, 691, 728
BmrFI	CCNGG	8 cut(s)	162, 219, 269, 276, 375, 476, 731, 775
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	206, 470
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	2 cut(s)	269, 276
BsaAI	YACGTR	2 cut(s)	482, 532
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	3 cut(s)	218, 374, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 305
Bse3DI	GCAATG	2 cut(s)	225, 523
BseBI	CCWGG	6 cut(s)	162, 219, 375, 476, 731, 775
BseDI	CCNNGG	3 cut(s)	218, 374, 773
BseLI	CCNNNNNNNGG	2 cut(s)	274, 305
BseMI	GCAATG	2 cut(s)	225, 523
BseRI	GAGGAG	1 cut(s)	597
BseSI	GKGCMC	5 cut(s)	225, 548, 692, 729, 746
BseXI	GCAGC	1 cut(s)	434
BsgI	GTGCAG	2 cut(s)	337, 415
Bsh1236I	CGCG	2 cut(s)	342, 618
BshFI	GGCC	4 cut(s)	160, 528, 666, 690
BshNI	GGYRCC	1 cut(s)	726
BsiSI	CCGG	3 cut(s)	22, 268, 275
BslFI	GGGAC	2 cut(s)	392, 732
BslI	CCNNNNNNNGG	2 cut(s)	274, 305
BsmAI	GTCTC	2 cut(s)	126, 342
BsmFI	GGGAC	2 cut(s)	392, 732
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	4 cut(s)	160, 528, 666, 690
Bsp120I	GGGCCC	1 cut(s)	688
Bsp1286I	GDGCHC	6 cut(s)	47, 225, 548, 692, 729, 746
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	52, 60, 70
BspACI	CCGC	2 cut(s)	618, 766
BspANI	GGCC	4 cut(s)	160, 528, 666, 690
BspFNI	CGCG	2 cut(s)	342, 618
BspLI	GGNNCC	6 cut(s)	20, 44, 273, 690, 691, 728
BspPI	GGATC	2 cut(s)	55, 60
BspT107I	GGYRCC	1 cut(s)	726
BsrDI	GCAATG	2 cut(s)	225, 523
BsrGI	TGTACA	1 cut(s)	239
BssECI	CCNNGG	3 cut(s)	218, 374, 773
BssMI	GATC	3 cut(s)	52, 60, 70
BssNI	GRCGYC	1 cut(s)	115
Bst2UI	CCWGG	6 cut(s)	162, 219, 375, 476, 731, 775
Bst4CI	ACNGT	5 cut(s)	86, 458, 543, 632, 713
BstACI	GRCGYC	1 cut(s)	115
BstAPI	GCANNNNNTGC	4 cut(s)	150, 399, 513, 681
BstAUI	TGTACA	1 cut(s)	239
BstBAI	YACGTR	2 cut(s)	482, 532
BstC8I	GCNNGC	1 cut(s)	656
BstEII	GGTNACC	1 cut(s)	470
BstFNI	CGCG	2 cut(s)	342, 618
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	3 cut(s)	55, 63, 73
BstMAI	GTCTC	2 cut(s)	126, 342
BstMBI	GATC	3 cut(s)	52, 60, 70
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 399, 513, 672, 681
BstNI	CCWGG	6 cut(s)	162, 219, 375, 476, 731, 775
BstNSI	RCATGY	1 cut(s)	450
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	8 cut(s)	160, 217, 267, 274, 373, 474, 729, 773
BstSFI	CTRYAG	1 cut(s)	457
BstSLI	GKGCMC	5 cut(s)	225, 548, 692, 729, 746
BstUI	CGCG	2 cut(s)	342, 618
BstV1I	GCAGC	1 cut(s)	434
BstV2I	GAAGAC	2 cut(s)	206, 470
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	3 cut(s)	323, 562, 662
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	160, 528, 666, 690
BtgZI	GCGATG	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	1 cut(s)	656
CaiI	CAGNNNCTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	688, 689, 763
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	2 cut(s)	240, 781
CviAII	CATG	4 cut(s)	283, 447, 685, 760
CviQI	GTAC	2 cut(s)	240, 781
DpnI	GATC	3 cut(s)	54, 62, 72
DpnII	GATC	3 cut(s)	52, 60, 70
EaeI	YGGCCR	3 cut(s)	158, 526, 664
Eco24I	GRGCYC	2 cut(s)	47, 692
Eco47I	GGWCC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	216
Eco72I	CACGTG	2 cut(s)	482, 532
Eco91I	GGTNACC	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	689
EcoO65I	GGTNACC	1 cut(s)	470
EcoRII	CCWGG	6 cut(s)	160, 217, 373, 474, 729, 773
EcoT38I	GRGCYC	2 cut(s)	47, 692
FaeI	CATG	4 cut(s)	286, 450, 688, 763
FaqI	GGGAC	2 cut(s)	392, 732
FatI	CATG	4 cut(s)	282, 446, 684, 759
FauNDI	CATATG	1 cut(s)	669
Fnu4HI	GCNGC	1 cut(s)	423
FriOI	GRGCYC	2 cut(s)	47, 692
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	4 cut(s)	174, 288, 537, 549
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	4 cut(s)	160, 528, 666, 690
HapII	CCGG	3 cut(s)	22, 268, 275
HgaI	GACGC	1 cut(s)	624
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	286, 450, 688, 763
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HinfI	GANTC	1 cut(s)	756
HpaII	CCGG	3 cut(s)	22, 268, 275
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	240, 614
Hpy188I	TCNGA	4 cut(s)	10, 57, 70, 235
Hpy188III	TCNNGA	1 cut(s)	750
Hpy8I	GTNNAC	2 cut(s)	240, 614
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	3 cut(s)	299, 436, 756
HpyCH4III	ACNGT	5 cut(s)	86, 458, 543, 632, 713
HpyCH4IV	ACGT	4 cut(s)	115, 481, 531, 636
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 399, 513, 672, 681
HpySE526I	ACGT	4 cut(s)	115, 481, 531, 636
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	286, 450, 688, 763
HspAI	GCGC	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	52, 60, 70
LmnI	GCTCC	6 cut(s)	18, 24, 30, 36, 42, 364
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	4 cut(s)	174, 288, 537, 549
MaeII	ACGT	4 cut(s)	115, 481, 531, 636
MaeIII	GTNAC	9 cut(s)	200, 249, 278, 290, 449, 470, 626, 632, 704
MalI	GATC	3 cut(s)	54, 62, 72
MboI	GATC	3 cut(s)	52, 60, 70
MboII	GAAGA	4 cut(s)	70, 206, 475, 765
MfeI	CAATTG	1 cut(s)	205
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	6 cut(s)	47, 225, 548, 692, 729, 746
MlsI	TGGCCA	2 cut(s)	528, 666
MluCI	AATT	2 cut(s)	205, 262
MluNI	TGGCCA	2 cut(s)	528, 666
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	8 cut(s)	104, 378, 569, 575, 578, 614, 716, 771
Mox20I	TGGCCA	2 cut(s)	528, 666
MscI	TGGCCA	2 cut(s)	528, 666
MslI	CAYNNNNRTG	4 cut(s)	207, 321, 711, 739
Msp20I	TGGCCA	2 cut(s)	528, 666
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	22, 268, 275
MspR9I	CCNGG	8 cut(s)	162, 219, 269, 276, 375, 476, 731, 775
MunI	CAATTG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	6 cut(s)	162, 219, 375, 476, 731, 775
MvnI	CGCG	2 cut(s)	342, 618
MwoI	GCNNNNNNNGC	5 cut(s)	150, 399, 513, 672, 681
NciI	CCSGG	2 cut(s)	269, 276
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	3 cut(s)	52, 60, 70
NlaIII	CATG	4 cut(s)	286, 450, 688, 763
NlaIV	GGNNCC	6 cut(s)	20, 44, 273, 690, 691, 728
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	6 cut(s)	200, 249, 278, 470, 632, 704
NspI	RCATGY	1 cut(s)	450
OliI	CACNNNNGTG	3 cut(s)	207, 321, 711
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	756
PkrI	GCNGC	1 cut(s)	424
PmaCI	CACGTG	2 cut(s)	482, 532
PmlI	CACGTG	2 cut(s)	482, 532
Ppu21I	YACGTR	2 cut(s)	482, 532
Psp6I	CCWGG	6 cut(s)	160, 217, 373, 474, 729, 773
PspCI	CACGTG	2 cut(s)	482, 532
PspEI	GGTNACC	1 cut(s)	470
PspGI	CCWGG	6 cut(s)	160, 217, 373, 474, 729, 773
PspN4I	GGNNCC	6 cut(s)	20, 44, 273, 690, 691, 728
PspOMI	GGGCCC	1 cut(s)	688
PspPI	GGNCC	3 cut(s)	688, 689, 763
PstNI	CAGNNNCTG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	241, 782
RsaNI	GTAC	2 cut(s)	240, 781
RseI	CAYNNNNRTG	4 cut(s)	207, 321, 711, 739
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	52, 60, 70
Sau96I	GGNCC	3 cut(s)	688, 689, 763
ScrFI	CCNGG	8 cut(s)	162, 219, 269, 276, 375, 476, 731, 775
SduI	GDGCHC	6 cut(s)	47, 225, 548, 692, 729, 746
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	763
SmiMI	CAYNNNNRTG	4 cut(s)	207, 321, 711, 739
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	2 cut(s)	205, 262
SsiI	CCGC	2 cut(s)	618, 766
SspMI	CTAG	4 cut(s)	174, 288, 537, 549
StyD4I	CCNGG	8 cut(s)	160, 217, 267, 274, 373, 474, 729, 773
TaaI	ACNGT	5 cut(s)	86, 458, 543, 632, 713
TaiI	ACGT	4 cut(s)	118, 484, 534, 639
TasI	AATT	2 cut(s)	205, 262
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	756
TscAI	CASTG	1 cut(s)	548
TseFI	GTSAC	6 cut(s)	200, 249, 278, 470, 632, 704
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	6 cut(s)	200, 249, 278, 470, 632, 704
TspDTI	ATGAA	3 cut(s)	318, 510, 748
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	763
XceI	RCATGY	1 cut(s)	450
XspI	CTAG	4 cut(s)	174, 288, 537, 549
ZraI	GACGTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.