Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Forward (+)

24635800 .. 24638204

Gene Structure 2405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGTTCAGACAGCAGGAGCCTAAGCAGGAGCAGGAGCAGGAGCCCTAAGGATCGTAAGATCCGTTCTGATCGCTTTTCCTATCGTGATGCACCTTACAGAAGAGATGGTCGTCGGGGTGGTGGTTTCAGCCGAGACAATCTCTGCAAGAACTGCAAAAGACCTGGCCATTTTGCTAGAGAATGCCCTAATGTTGCAATTTGTCACAATTGTGGTCTTCCCGGGCACATTGCTTCGGAGTGTACCACAAAGTCACTATGTTGGAATTGCCGTGAACCTGGTCACATGGCCAGTAACTGCCCGAATGAAGGCATCTGCCACACCTGTGGCAAGGCTGGACACCGTGCTAGAGACTGCACTGCTGCCCCAATGCCACCTGGGGACTTAAGGTTGTGCAACAACTGCTACAAGCAGGGCCATATTGCAGTCGACTGCACAAATGAGAAGGCATGCAACAACTGTAGGAAGACAGGTCACCTGGCGCGTGATTGCCCAAATGAACCCATCTGTAACATGTGCAATGTATCCGGGCATGTGGCCAGGCAGTGCCCCAGAGCCAATGTTTTGGCAGAGAGGGGAGGAGGTGGTGGTGGTGGTGGTGGTGGAGTTCGCGGCAGTAGTGGCGGTGGCTACCATCGTGACATTGTATGTAGGAACTGCCAGCAACTTGGGCATATGAGCAGGGATTGCATGGGCCCCTTGATGATCTGTCATAACTGTGGGGGGCGAGGACACCTGGCATATGAGTGCCCTTCTGGTAGGTTCATGGATCGCTACCCCAGGAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

263

Amino Acids

28.75

Weight (kDa)

9.26

Isoelectric Point (pI)

72.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	48 - 64	4.6e-06	Zinc knuckle
zf-CCHC	PF00098	87 - 102	2.5e-06	Zinc knuckle
zf-CCHC	PF00098	150 - 166	4.3e-06	Zinc knuckle
zf-CCHC	PF00098	216 - 230	1e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	2 cut(s)	484, 612
AciI	CCGC	2 cut(s)	612, 624
AclWI	GGATC	3 cut(s)	55, 60, 777
AcoI	YGGCCR	3 cut(s)	166, 288, 537
AfaI	GTAC	2 cut(s)	244, 788
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflII	CTTAAG	1 cut(s)	385
AflIII	ACRYGT	1 cut(s)	513
AjnI	CCWGG	7 cut(s)	163, 277, 376, 477, 539, 735, 779
AleI	CACNNNNGTG	2 cut(s)	210, 324
Alw26I	GTCTC	2 cut(s)	129, 345
AlwI	GGATC	3 cut(s)	55, 60, 777
AlwNI	CAGNNNCTG	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	5 cut(s)	166, 288, 415, 537, 694
ApaI	GGGCCC	1 cut(s)	698
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	3 cut(s)	415, 694, 695
AsuC2I	CCSGG	3 cut(s)	222, 223, 529
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	4 cut(s)	228, 551, 698, 752
BalI	TGGCCA	3 cut(s)	168, 290, 539
BanII	GRGCYC	2 cut(s)	47, 698
BbsI	GAAGAC	2 cut(s)	209, 473
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	3 cut(s)	101, 512, 642
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 737, 781
BciVI	GTATCC	1 cut(s)	535
BcnI	CCSGG	3 cut(s)	222, 223, 529
BcoDI	GTCTC	2 cut(s)	129, 345
BfaI	CTAG	2 cut(s)	177, 348
BfmI	CTRYAG	1 cut(s)	460
BfrI	CTTAAG	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	363, 613
BlsI	GCNGC	2 cut(s)	364, 614
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	415, 694, 695
BmiI	GGNNCC	4 cut(s)	20, 44, 696, 697
BmsI	GCATC	2 cut(s)	79, 321
BpiI	GAAGAC	2 cut(s)	209, 473
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	3 cut(s)	222, 223, 529
BsaJI	CCNNGG	3 cut(s)	221, 377, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	291
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	2 cut(s)	228, 526
BseBI	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 737, 781
BseDI	CCNNGG	3 cut(s)	221, 377, 779
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	2 cut(s)	228, 526
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	594
BseSI	GKGCMC	4 cut(s)	228, 551, 698, 752
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	2 cut(s)	340, 418
Bsh1236I	CGCG	2 cut(s)	484, 612
BshFI	GGCC	5 cut(s)	168, 290, 417, 539, 696
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	222, 528
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	129, 345
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	5 cut(s)	168, 290, 417, 539, 696
BsoBI	CYCGRG	1 cut(s)	221
Bsp120I	GGGCCC	1 cut(s)	694
Bsp1286I	GDGCHC	5 cut(s)	47, 228, 551, 698, 752
Bsp143I	GATC	5 cut(s)	52, 60, 70, 705, 769
BspACI	CCGC	2 cut(s)	612, 624
BspANI	GGCC	5 cut(s)	168, 290, 417, 539, 696
BspFNI	CGCG	2 cut(s)	484, 612
BspLI	GGNNCC	4 cut(s)	20, 44, 696, 697
BspPI	GGATC	3 cut(s)	55, 60, 777
BspTI	CTTAAG	1 cut(s)	385
BsrDI	GCAATG	2 cut(s)	228, 526
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	221, 377, 779
BssMI	GATC	5 cut(s)	52, 60, 70, 705, 769
Bst2UI	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 737, 781
Bst4CI	ACNGT	3 cut(s)	344, 461, 719
Bst6I	CTCTTC	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	385
BstAPI	GCANNNNNTGC	3 cut(s)	153, 402, 687
BstC8I	GCNNGC	2 cut(s)	451, 662
BstDEI	CTNAG	2 cut(s)	23, 48
BstEII	GGTNACC	1 cut(s)	473
BstFNI	CGCG	2 cut(s)	484, 612
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	5 cut(s)	55, 63, 73, 708, 772
BstMAI	GTCTC	2 cut(s)	129, 345
BstMBI	GATC	5 cut(s)	52, 60, 70, 705, 769
BstMWI	GCNNNNNNNGC	5 cut(s)	153, 402, 621, 670, 687
BstNI	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 737, 781
BstNSI	RCATGY	3 cut(s)	453, 517, 536
BstPI	GGTNACC	1 cut(s)	473
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	4 cut(s)	228, 551, 698, 752
BstUI	CGCG	2 cut(s)	484, 612
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	2 cut(s)	209, 473
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	3 cut(s)	326, 565, 668
BstYI	RGATCY	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	5 cut(s)	168, 290, 417, 539, 696
BtsI	GCAGTG	2 cut(s)	357, 551
BtsIMutI	CAGTG	2 cut(s)	357, 551
Cac8I	GCNNGC	2 cut(s)	451, 662
CaiI	CAGNNNCTG	1 cut(s)	297
CfoI	GCGC	1 cut(s)	484
Cfr13I	GGNCC	3 cut(s)	415, 694, 695
Cfr9I	CCCGGG	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	243, 787
CviAII	CATG	6 cut(s)	286, 450, 514, 533, 691, 766
CviQI	GTAC	2 cut(s)	243, 787
DdeI	CTNAG	2 cut(s)	23, 48
DpnI	GATC	5 cut(s)	54, 62, 72, 707, 771
DpnII	GATC	5 cut(s)	52, 60, 70, 705, 769
EaeI	YGGCCR	3 cut(s)	166, 288, 537
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	47, 698
Eco81I	CCTNAGG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	695
EcoO65I	GGTNACC	1 cut(s)	473
EcoRII	CCWGG	7 cut(s)	163, 277, 376, 477, 539, 735, 779
EcoT38I	GRGCYC	2 cut(s)	47, 698
FaeI	CATG	6 cut(s)	289, 453, 517, 536, 694, 769
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	6 cut(s)	285, 449, 513, 532, 690, 765
FauNDI	CATATG	2 cut(s)	675, 742
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	363, 613
FriOI	GRGCYC	2 cut(s)	47, 698
Fsp4HI	GCNGC	2 cut(s)	363, 613
FspBI	CTAG	2 cut(s)	177, 348
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	2 cut(s)	363, 613
HaeIII	GGCC	5 cut(s)	168, 290, 417, 539, 696
HapII	CCGG	2 cut(s)	222, 528
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	6 cut(s)	289, 453, 517, 536, 694, 769
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	222, 528
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	3 cut(s)	243, 275, 430
Hpy188I	TCNGA	3 cut(s)	10, 70, 238
Hpy188III	TCNNGA	2 cut(s)	86, 638
Hpy8I	GTNNAC	3 cut(s)	243, 275, 430
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	3 cut(s)	302, 439, 762
HpyCH4III	ACNGT	3 cut(s)	344, 461, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	153, 402, 621, 670, 687
HpyF3I	CTNAG	2 cut(s)	23, 48
Hsp92II	CATG	6 cut(s)	289, 453, 517, 536, 694, 769
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	5 cut(s)	52, 60, 70, 705, 769
LmnI	GCTCC	4 cut(s)	18, 30, 36, 42
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	2 cut(s)	79, 321
MabI	ACCWGGT	1 cut(s)	277
MaeI	CTAG	2 cut(s)	177, 348
MaeIII	GTNAC	7 cut(s)	203, 252, 281, 293, 473, 509, 638
MalI	GATC	5 cut(s)	54, 62, 72, 707, 771
MboI	GATC	5 cut(s)	52, 60, 70, 705, 769
MboII	GAAGA	3 cut(s)	114, 209, 478
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	5 cut(s)	47, 228, 551, 698, 752
MlsI	TGGCCA	3 cut(s)	168, 290, 539
MluCI	AATT	3 cut(s)	198, 208, 265
MluNI	TGGCCA	3 cut(s)	168, 290, 539
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	5 cut(s)	567, 572, 575, 722, 777
Mox20I	TGGCCA	3 cut(s)	168, 290, 539
MscI	TGGCCA	3 cut(s)	168, 290, 539
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	4 cut(s)	210, 324, 717, 745
Msp20I	TGGCCA	3 cut(s)	168, 290, 539
MspCI	CTTAAG	1 cut(s)	385
MspI	CCGG	2 cut(s)	222, 528
MunI	CAATTG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	7 cut(s)	165, 279, 378, 479, 541, 737, 781
MvnI	CGCG	2 cut(s)	484, 612
MwoI	GCNNNNNNNGC	5 cut(s)	153, 402, 621, 670, 687
NciI	CCSGG	3 cut(s)	222, 223, 529
NdeI	CATATG	2 cut(s)	675, 742
NdeII	GATC	5 cut(s)	52, 60, 70, 705, 769
NlaIII	CATG	6 cut(s)	289, 453, 517, 536, 694, 769
NlaIV	GGNNCC	4 cut(s)	20, 44, 696, 697
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	5 cut(s)	203, 252, 281, 473, 638
NspI	RCATGY	3 cut(s)	453, 517, 536
OliI	CACNNNNGTG	2 cut(s)	210, 324
PaeI	GCATGC	1 cut(s)	453
PciI	ACATGT	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	364, 614
PscI	ACATGT	1 cut(s)	513
Psp6I	CCWGG	7 cut(s)	163, 277, 376, 477, 539, 735, 779
PspEI	GGTNACC	1 cut(s)	473
PspGI	CCWGG	7 cut(s)	163, 277, 376, 477, 539, 735, 779
PspN4I	GGNNCC	4 cut(s)	20, 44, 696, 697
PspOMI	GGGCCC	1 cut(s)	694
PspPI	GGNCC	3 cut(s)	415, 694, 695
PsrI	GAACNNNNNNTAC	2 cut(s)	49, 81
PstNI	CAGNNNCTG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	2 cut(s)	244, 788
RsaNI	GTAC	2 cut(s)	243, 787
RseI	CAYNNNNRTG	4 cut(s)	210, 324, 717, 745
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	2 cut(s)	363, 613
Sau3AI	GATC	5 cut(s)	52, 60, 70, 705, 769
Sau96I	GGNCC	3 cut(s)	415, 694, 695
SduI	GDGCHC	5 cut(s)	47, 228, 551, 698, 752
SexAI	ACCWGGT	1 cut(s)	277
SfaNI	GCATC	2 cut(s)	79, 321
SfcI	CTRYAG	1 cut(s)	460
SmaI	CCCGGG	1 cut(s)	223
SmiMI	CAYNNNNRTG	4 cut(s)	210, 324, 717, 745
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	3 cut(s)	198, 208, 265
SsiI	CCGC	2 cut(s)	612, 624
SspMI	CTAG	2 cut(s)	177, 348
TaaI	ACNGT	3 cut(s)	344, 461, 719
TaqI	TCGA	1 cut(s)	429
TasI	AATT	3 cut(s)	198, 208, 265
TauI	GCSGC	1 cut(s)	615
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	2 cut(s)	364, 551
TseFI	GTSAC	5 cut(s)	203, 252, 281, 473, 638
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	5 cut(s)	203, 252, 281, 473, 638
TspDTI	ATGAA	3 cut(s)	321, 513, 754
TspGWI	ACGGA	1 cut(s)	53
TspMI	CCCGGG	1 cut(s)	221
TspRI	CASTG	2 cut(s)	364, 551
Vha464I	CTTAAG	1 cut(s)	385
XceI	RCATGY	3 cut(s)	453, 517, 536
XmaI	CCCGGG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	177, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.