Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Forward (+)

6843166 .. 6847450

Gene Structure 4285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1040200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAGTTCAGACAGCAGGAGCCGGAGTCGGAGCAGGAGCCCTTCAGATCGGAAGATCCGTTCTGATCGTTTTTCCTACCGTGATGCACCTTACAGGAGAGATGGAGGACGTCGGGGTTTCAGCCGAGACAATCTGTGCAAGAACTGCAAACGGCCAGGCCATTTTGCTAGAGAATGCCCCAATGTTGCAATTTGTCATAATTGTGGTCTTCCTGGGCACATTGCTTCAGAGTGTACAACAAAGTCACTATGTTGGAACTGCCGGGAACCTGGTCACATGGCCAGTAACTGCCCAAATGAAGGCATCTGCCACACTTGTAGTAAGACTGGACATCGCGCCAGGGACTGCACAGCTCCCCCAATGCCACCTGGGGACTTGAGGTTGTGCAACAACTGCTACAAGCAGGGTCATATTGCAGCTGACTGCACAAATGATAAGGCATGTAACAACTGTAGGAAGACGGGTCACCTGGCACGTGATTGCCCGAATGAACCCATCTGCAACTTATGCAATGTATCTGGGCATGTGGCGAGACAGTGCCCCAGAGCCAATGTTTTGGGAGAGCGGGGAGGTGGAGGAGGTGGAGGAGGTGGAGGTGGTGGAATGGGGGGACGCGGAGGCAGTTACCGTGACGTTGTATGTAGGAACTGCCAGCAACTTGGCCACATGAGCAGGGATTGCATGGGCCCCTTGATGATCTGTCACAACTGTGGGGGACGAGGACACTTGGCATACGAGTGCCCTTCGGGAAGATTCATGGATCGCTACCCCAGGAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

261

Amino Acids

28.37

Weight (kDa)

9.22

Isoelectric Point (pI)

73.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	45 - 61	4.5e-06	Zinc knuckle
zf-CCHC	PF00098	84 - 99	2.5e-06	Zinc knuckle
zf-CCHC	PF00098	147 - 163	4.2e-06	Zinc knuckle
zf-CCHC	PF00098	213 - 227	1.1e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	565
AccII	CGCG	2 cut(s)	336, 615
AciI	CCGC	2 cut(s)	565, 615
AclWI	GGATC	2 cut(s)	49, 768
AcoI	YGGCCR	3 cut(s)	152, 279, 661
AcuI	CTGAAG	2 cut(s)	27, 210
AcvI	CACGTG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	2 cut(s)	235, 779
AfiI	CCNNNNNNNGG	1 cut(s)	299
AjnI	CCWGG	7 cut(s)	154, 211, 268, 338, 367, 468, 770
AleI	CACNNNNGTG	1 cut(s)	708
AloI	GAACNNNNNNTCC	2 cut(s)	43, 75
AluBI	AGCT	2 cut(s)	353, 419
AluI	AGCT	2 cut(s)	353, 419
Alw26I	GTCTC	2 cut(s)	120, 526
AlwI	GGATC	2 cut(s)	49, 768
AlwNI	CAGNNNCTG	2 cut(s)	288, 345
AoxI	GGCC	5 cut(s)	152, 157, 279, 661, 685
ApaI	GGGCCC	1 cut(s)	689
ApeKI	GCWGC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	685, 686
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	458
BaeGI	GKGCMC	4 cut(s)	219, 542, 689, 743
BalI	TGGCCA	2 cut(s)	281, 663
BanII	GRGCYC	2 cut(s)	41, 689
BbrPI	CACGTG	1 cut(s)	476
BbsI	GAAGAC	2 cut(s)	200, 464
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	2 cut(s)	95, 503
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	7 cut(s)	156, 213, 270, 340, 369, 470, 772
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	120, 526
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	451
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	8 cut(s)	156, 213, 263, 270, 340, 369, 470, 772
BmgT120I	GGNCC	2 cut(s)	685, 686
BmiI	GGNNCC	5 cut(s)	20, 38, 267, 687, 688
BmrFI	CCNGG	8 cut(s)	156, 213, 263, 270, 340, 369, 470, 772
BmsI	GCATC	2 cut(s)	73, 312
BpiI	GAAGAC	2 cut(s)	200, 464
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	109
BsaJI	CCNNGG	4 cut(s)	212, 339, 368, 770
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	282, 331
Bse3DI	GCAATG	2 cut(s)	219, 517
BseBI	CCWGG	7 cut(s)	156, 213, 270, 340, 369, 470, 772
BseDI	CCNNGG	4 cut(s)	212, 339, 368, 770
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMI	GCAATG	2 cut(s)	219, 517
BseNI	ACTGG	2 cut(s)	282, 331
BseRI	GAGGAG	2 cut(s)	591, 600
BseSI	GKGCMC	4 cut(s)	219, 542, 689, 743
BseXI	GCAGC	1 cut(s)	428
BsgI	GTGCAG	2 cut(s)	331, 409
Bsh1236I	CGCG	2 cut(s)	336, 615
BshFI	GGCC	5 cut(s)	154, 159, 281, 663, 687
BsiSI	CCGG	2 cut(s)	22, 262
BslFI	GGGAC	4 cut(s)	356, 386, 624, 729
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	120, 526
BsmFI	GGGAC	4 cut(s)	356, 386, 624, 729
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	5 cut(s)	154, 159, 281, 663, 687
Bsp120I	GGGCCC	1 cut(s)	685
Bsp1286I	GDGCHC	5 cut(s)	41, 219, 542, 689, 743
Bsp1407I	TGTACA	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	46, 54, 64, 696, 760
BspACI	CCGC	2 cut(s)	565, 615
BspANI	GGCC	5 cut(s)	154, 159, 281, 663, 687
BspFNI	CGCG	2 cut(s)	336, 615
BspLI	GGNNCC	5 cut(s)	20, 38, 267, 687, 688
BspPI	GGATC	2 cut(s)	49, 768
BsrBI	CCGCTC	1 cut(s)	565
BsrDI	GCAATG	2 cut(s)	219, 517
BsrGI	TGTACA	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	282, 331
BssECI	CCNNGG	4 cut(s)	212, 339, 368, 770
BssMI	GATC	5 cut(s)	46, 54, 64, 696, 760
BssNI	GRCGYC	1 cut(s)	109
Bst2UI	CCWGG	7 cut(s)	156, 213, 270, 340, 369, 470, 772
Bst4CI	ACNGT	5 cut(s)	80, 452, 537, 629, 710
BstACI	GRCGYC	1 cut(s)	109
BstAPI	GCANNNNNTGC	4 cut(s)	144, 393, 507, 678
BstAUI	TGTACA	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	653
BstEII	GGTNACC	1 cut(s)	464
BstFNI	CGCG	2 cut(s)	336, 615
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	49, 57, 67, 699, 763
BstMAI	GTCTC	2 cut(s)	120, 526
BstMBI	GATC	5 cut(s)	46, 54, 64, 696, 760
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 393, 507, 669, 678
BstNI	CCWGG	7 cut(s)	156, 213, 270, 340, 369, 470, 772
BstNSI	RCATGY	2 cut(s)	444, 527
BstPI	GGTNACC	1 cut(s)	464
BstSCI	CCNGG	8 cut(s)	154, 211, 261, 268, 338, 367, 468, 770
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	4 cut(s)	219, 542, 689, 743
BstUI	CGCG	2 cut(s)	336, 615
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	2 cut(s)	200, 464
BstX2I	RGATCY	1 cut(s)	54
BstXI	CCANNNNNNTGG	2 cut(s)	556, 659
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	5 cut(s)	154, 159, 281, 663, 687
BtgZI	GCGATG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	1 cut(s)	653
CaiI	CAGNNNCTG	2 cut(s)	288, 345
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	685, 686
CseI	GACGC	1 cut(s)	621
CsiI	ACCWGGT	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	234, 778
CviAII	CATG	6 cut(s)	277, 441, 524, 667, 682, 757
CviQI	GTAC	2 cut(s)	234, 778
DpnI	GATC	5 cut(s)	48, 56, 66, 698, 762
DpnII	GATC	5 cut(s)	46, 54, 64, 696, 760
EaeI	YGGCCR	3 cut(s)	152, 279, 661
Eco24I	GRGCYC	2 cut(s)	41, 689
Eco57I	CTGAAG	2 cut(s)	27, 210
Eco72I	CACGTG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	686
EcoO65I	GGTNACC	1 cut(s)	464
EcoRII	CCWGG	7 cut(s)	154, 211, 268, 338, 367, 468, 770
EcoT38I	GRGCYC	2 cut(s)	41, 689
FaeI	CATG	6 cut(s)	280, 444, 527, 670, 685, 760
FaqI	GGGAC	4 cut(s)	356, 386, 624, 729
FatI	CATG	6 cut(s)	276, 440, 523, 666, 681, 756
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	1 cut(s)	417
FriOI	GRGCYC	2 cut(s)	41, 689
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	5 cut(s)	154, 159, 281, 663, 687
HapII	CCGG	2 cut(s)	22, 262
HgaI	GACGC	1 cut(s)	621
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	6 cut(s)	280, 444, 527, 670, 685, 760
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	2 cut(s)	25, 753
HpaII	CCGG	2 cut(s)	22, 262
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	6 cut(s)	10, 30, 46, 51, 64, 229
Hpy188III	TCNNGA	1 cut(s)	747
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	3 cut(s)	51, 293, 753
HpyCH4III	ACNGT	5 cut(s)	80, 452, 537, 629, 710
HpyCH4IV	ACGT	3 cut(s)	109, 475, 633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 393, 507, 669, 678
HpySE526I	ACGT	3 cut(s)	109, 475, 633
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	6 cut(s)	280, 444, 527, 670, 685, 760
HspAI	GCGC	1 cut(s)	336
Kzo9I	GATC	5 cut(s)	46, 54, 64, 696, 760
LmnI	GCTCC	4 cut(s)	18, 30, 36, 358
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	2 cut(s)	73, 312
MabI	ACCWGGT	1 cut(s)	268
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	3 cut(s)	109, 475, 633
MaeIII	GTNAC	8 cut(s)	243, 272, 284, 443, 464, 623, 629, 701
MalI	GATC	5 cut(s)	48, 56, 66, 698, 762
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	5 cut(s)	46, 54, 64, 696, 760
MboII	GAAGA	4 cut(s)	64, 200, 469, 762
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	5 cut(s)	41, 219, 542, 689, 743
MlsI	TGGCCA	2 cut(s)	281, 663
MluCI	AATT	2 cut(s)	189, 199
MluNI	TGGCCA	2 cut(s)	281, 663
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	2 cut(s)	8, 233
Mox20I	TGGCCA	2 cut(s)	281, 663
MscI	TGGCCA	2 cut(s)	281, 663
MslI	CAYNNNNRTG	3 cut(s)	201, 708, 736
Msp20I	TGGCCA	2 cut(s)	281, 663
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	22, 262
MspR9I	CCNGG	8 cut(s)	156, 213, 263, 270, 340, 369, 470, 772
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	7 cut(s)	156, 213, 270, 340, 369, 470, 772
MvnI	CGCG	2 cut(s)	336, 615
MwoI	GCNNNNNNNGC	5 cut(s)	144, 393, 507, 669, 678
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	5 cut(s)	46, 54, 64, 696, 760
NlaIII	CATG	6 cut(s)	280, 444, 527, 670, 685, 760
NlaIV	GGNNCC	5 cut(s)	20, 38, 267, 687, 688
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	5 cut(s)	243, 272, 464, 629, 701
NspI	RCATGY	2 cut(s)	444, 527
OliI	CACNNNNGTG	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	753
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	1 cut(s)	33
PmaCI	CACGTG	1 cut(s)	476
PmlI	CACGTG	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	33
Ppu21I	YACGTR	1 cut(s)	476
Psp6I	CCWGG	7 cut(s)	154, 211, 268, 338, 367, 468, 770
PspCI	CACGTG	1 cut(s)	476
PspEI	GGTNACC	1 cut(s)	464
PspGI	CCWGG	7 cut(s)	154, 211, 268, 338, 367, 468, 770
PspN4I	GGNNCC	5 cut(s)	20, 38, 267, 687, 688
PspOMI	GGGCCC	1 cut(s)	685
PspPI	GGNCC	2 cut(s)	685, 686
PstNI	CAGNNNCTG	2 cut(s)	288, 345
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	235, 779
RsaNI	GTAC	2 cut(s)	234, 778
RseI	CAYNNNNRTG	3 cut(s)	201, 708, 736
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	5 cut(s)	46, 54, 64, 696, 760
Sau96I	GGNCC	2 cut(s)	685, 686
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	8 cut(s)	156, 213, 263, 270, 340, 369, 470, 772
SduI	GDGCHC	5 cut(s)	41, 219, 542, 689, 743
SexAI	ACCWGGT	1 cut(s)	268
SfaNI	GCATC	2 cut(s)	73, 312
SfcI	CTRYAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	3 cut(s)	201, 708, 736
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	2 cut(s)	189, 199
SsiI	CCGC	2 cut(s)	565, 615
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	8 cut(s)	154, 211, 261, 268, 338, 367, 468, 770
TaaI	ACNGT	5 cut(s)	80, 452, 537, 629, 710
TaiI	ACGT	3 cut(s)	112, 478, 636
TasI	AATT	2 cut(s)	189, 199
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	753
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	5 cut(s)	243, 272, 464, 629, 701
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	5 cut(s)	243, 272, 464, 629, 701
TspDTI	ATGAA	3 cut(s)	312, 504, 745
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	542
XceI	RCATGY	2 cut(s)	444, 527
XspI	CTAG	1 cut(s)	168
ZraI	GACGTC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.