Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Reverse (-)

17465494 .. 17467128

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21972.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGCCAAAGCCCGTCACGATCCAGGAGGTTCCGCAGCAGTGAACGTGCATCTTACCGTGATGCCCCATATCCTAGGGAGCGCCGTGTGAATAGGAATGATTTTCTTTGCAACAAGTGTAAACGACCAGGGCACTTTGCTAGAGATTGTCCAAATTTGACTGTCTGCAACAACTGTGGACTTCCTGGCCACATTGCTGCTGAGTGCAACTCGACTGCTACGTGCTGGAACTGCAAGGAGCCTGGGCATCTTGCAAACCAATGCTCTAACGATCCAGTCTGCCATATGTGCGGTAAGATGGGTCACCTCGCTCGTGATTGCTCAAACCCATCTCTTCCATCCCATGATGCAAGGCTCTGCAACAACTGCTACAAGCCAGGCCACATTGCGGTCGCCTGCACCAACGAGAAAGCCTGCAACAACTGCCGCAAGCCAGGCCACCTTGCACGCGACTGCCCCAACGAGCCCGTCTGCAACATCTGCAATATTTCAGGCCACGTGGCCCGTCACTGCCCCAAGTCAGGCCCGGAATCAAACATGGGAGGAGGCCCTTTCCGTGACATCATCTGCCGCAACTGTGGGCAGCCAGGGCATGTCAGCCGCGAGTGTGTGTCCCTCGTCATCTGCCACAACTGCGGGGGAAGGGGTCACCAGGCTTACGAGTGCCCTTCTGTCCTGATGCATGACCGCGGCATGCGTAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

236

Amino Acids

25.98

Weight (kDa)

8.91

Isoelectric Point (pI)

74.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	37 - 52	2.9e-06	Zinc knuckle
zf-CCHC	PF00098	138 - 154	2.1e-06	Zinc knuckle
zf-CCHC	PF00098	189 - 203	8.9e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	450, 603, 690
AciI	CCGC	9 cut(s)	34, 291, 389, 427, 571, 601, 636, 688, 690
AclWI	GGATC	2 cut(s)	15, 266
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	154
AcvI	CACGTG	1 cut(s)	499
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	2 cut(s)	388, 521
AjnI	CCWGG	8 cut(s)	23, 127, 184, 241, 376, 433, 586, 651
AlwI	GGATC	2 cut(s)	15, 266
AoxI	GGCC	7 cut(s)	187, 379, 436, 493, 501, 523, 547
ApeKI	GCWGC	3 cut(s)	36, 197, 583
ApoI	RAATTY	1 cut(s)	154
AspA2I	CCTAGG	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	502, 524, 548
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	296, 641
AvrII	CCTAGG	1 cut(s)	74
BaeGI	GKGCMC	2 cut(s)	135, 668
BalI	TGGCCA	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	468
BauI	CACGAG	1 cut(s)	312
BbrPI	CACGTG	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	48, 184, 595
BccI	CCATC	3 cut(s)	292, 337, 346
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	8 cut(s)	25, 129, 186, 243, 378, 435, 588, 653
BcnI	CCSGG	1 cut(s)	527
BfaI	CTAG	2 cut(s)	75, 141
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	7 cut(s)	37, 198, 427, 571, 584, 601, 691
BlnI	CCTAGG	1 cut(s)	74
BlsI	GCNGC	7 cut(s)	38, 199, 428, 572, 585, 602, 692
Bme1390I	CCNGG	9 cut(s)	25, 129, 186, 243, 378, 435, 527, 588, 653
BmgT120I	GGNCC	3 cut(s)	502, 524, 548
BmiI	GGNNCC	2 cut(s)	32, 240
BmrFI	CCNGG	9 cut(s)	25, 129, 186, 243, 378, 435, 527, 588, 653
BmsI	GCATC	5 cut(s)	52, 59, 256, 337, 669
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpuMI	CCSGG	1 cut(s)	527
BsaAI	YACGTR	2 cut(s)	222, 499
BsaJI	CCNNGG	5 cut(s)	74, 128, 242, 587, 688
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 521
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	2 cut(s)	192, 384
BseBI	CCWGG	8 cut(s)	25, 129, 186, 243, 378, 435, 588, 653
BseDI	CCNNGG	5 cut(s)	74, 128, 242, 587, 688
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	388, 521
BseMI	GCAATG	2 cut(s)	192, 384
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	2 cut(s)	135, 668
BseXI	GCAGC	3 cut(s)	48, 184, 595
BsgI	GTGCAG	1 cut(s)	382
Bsh1236I	CGCG	3 cut(s)	450, 603, 690
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	7 cut(s)	189, 381, 438, 495, 503, 525, 549
BsiEI	CGRYCG	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	388, 521
BsmFI	GGGAC	1 cut(s)	598
BsnI	GGCC	7 cut(s)	189, 381, 438, 495, 503, 525, 549
Bsp1286I	GDGCHC	3 cut(s)	135, 468, 668
Bsp143I	GATC	2 cut(s)	20, 271
BspACI	CCGC	9 cut(s)	34, 291, 389, 427, 571, 601, 636, 688, 690
BspANI	GGCC	7 cut(s)	189, 381, 438, 495, 503, 525, 549
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	3 cut(s)	450, 603, 690
BspLI	GGNNCC	2 cut(s)	32, 240
BspPI	GGATC	2 cut(s)	15, 266
BsrDI	GCAATG	2 cut(s)	192, 384
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	5 cut(s)	74, 128, 242, 587, 688
BssMI	GATC	2 cut(s)	20, 271
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	8 cut(s)	25, 129, 186, 243, 378, 435, 588, 653
Bst4CI	ACNGT	4 cut(s)	59, 163, 176, 578
Bst6I	CTCTTC	1 cut(s)	339
BstAPI	GCANNNNNTGC	3 cut(s)	366, 423, 480
BstBAI	YACGTR	2 cut(s)	222, 499
BstC8I	GCNNGC	5 cut(s)	397, 415, 431, 448, 695
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	688
BstEII	GGTNACC	2 cut(s)	302, 647
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	3 cut(s)	450, 603, 690
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	23, 274
BstMBI	GATC	2 cut(s)	20, 271
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	8 cut(s)	231, 288, 366, 423, 435, 480, 589, 633
BstNI	CCWGG	8 cut(s)	25, 129, 186, 243, 378, 435, 588, 653
BstNSI	RCATGY	2 cut(s)	596, 697
BstPI	GGTNACC	2 cut(s)	302, 647
BstSCI	CCNGG	9 cut(s)	23, 127, 184, 241, 376, 433, 525, 586, 651
BstSLI	GKGCMC	2 cut(s)	135, 668
BstUI	CGCG	3 cut(s)	450, 603, 690
BstV1I	GCAGC	3 cut(s)	48, 184, 595
BsuRI	GGCC	7 cut(s)	189, 381, 438, 495, 503, 525, 549
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	2 cut(s)	46, 508
BtsIMutI	CAGTG	2 cut(s)	46, 508
Cac8I	GCNNGC	5 cut(s)	397, 415, 431, 448, 695
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	502, 524, 548
Cfr42I	CCGCGG	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	703
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	5 cut(s)	344, 538, 593, 683, 694
CviQI	GTAC	1 cut(s)	703
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	22, 273
DpnII	GATC	2 cut(s)	20, 271
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	468
Eco72I	CACGTG	1 cut(s)	499
Eco91I	GGTNACC	2 cut(s)	302, 647
EcoO109I	RGGNCCY	1 cut(s)	548
EcoO65I	GGTNACC	2 cut(s)	302, 647
EcoRII	CCWGG	8 cut(s)	23, 127, 184, 241, 376, 433, 586, 651
EcoT14I	CCWWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	684
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	5 cut(s)	347, 541, 596, 686, 697
FaiI	YATR	8 cut(s)	70, 285, 287, 345, 539, 594, 684, 695
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	5 cut(s)	343, 537, 592, 682, 693
FauI	CCCGC	1 cut(s)	629
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	7 cut(s)	37, 198, 427, 571, 584, 601, 691
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	7 cut(s)	37, 198, 427, 571, 584, 601, 691
FspBI	CTAG	2 cut(s)	75, 141
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	7 cut(s)	37, 198, 427, 571, 584, 601, 691
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	7 cut(s)	189, 381, 438, 495, 503, 525, 549
HapII	CCGG	1 cut(s)	527
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	347, 541, 596, 686, 697
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	530
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	2 cut(s)	296, 641
Hpy166II	GTNNAC	3 cut(s)	44, 122, 179
Hpy188III	TCNNGA	3 cut(s)	18, 314, 676
Hpy8I	GTNNAC	3 cut(s)	44, 122, 179
HpyAV	CCTTC	2 cut(s)	636, 678
HpyCH4III	ACNGT	4 cut(s)	59, 163, 176, 578
HpyCH4IV	ACGT	3 cut(s)	46, 221, 498
HpyF10VI	GCNNNNNNNGC	8 cut(s)	231, 288, 366, 423, 435, 480, 589, 633
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	3 cut(s)	46, 221, 498
Hsp92II	CATG	5 cut(s)	347, 541, 596, 686, 697
HspAI	GCGC	1 cut(s)	82
KspI	CCGCGG	1 cut(s)	691
Kzo9I	GATC	2 cut(s)	20, 271
LmnI	GCTCC	2 cut(s)	79, 238
Lsp1109I	GCAGC	3 cut(s)	48, 184, 595
LweI	GCATC	5 cut(s)	52, 59, 256, 337, 669
MaeI	CTAG	2 cut(s)	75, 141
MaeII	ACGT	3 cut(s)	46, 221, 498
MaeIII	GTNAC	5 cut(s)	15, 302, 506, 557, 647
MalI	GATC	2 cut(s)	22, 273
MboI	GATC	2 cut(s)	20, 271
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	3 cut(s)	135, 468, 668
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	1 cut(s)	154
MluNI	TGGCCA	1 cut(s)	189
MnlI	CCTC	5 cut(s)	21, 317, 536, 539, 626
Mox20I	TGGCCA	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	690
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	9 cut(s)	25, 129, 186, 243, 378, 435, 527, 588, 653
MvaI	CCWGG	8 cut(s)	25, 129, 186, 243, 378, 435, 588, 653
MvnI	CGCG	3 cut(s)	450, 603, 690
MwoI	GCNNNNNNNGC	8 cut(s)	231, 288, 366, 423, 435, 480, 589, 633
NciI	CCSGG	1 cut(s)	527
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	2 cut(s)	20, 271
NlaIII	CATG	5 cut(s)	347, 541, 596, 686, 697
NlaIV	GGNNCC	2 cut(s)	32, 240
NmuCI	GTSAC	5 cut(s)	15, 302, 506, 557, 647
NsiI	ATGCAT	1 cut(s)	684
NspI	RCATGY	2 cut(s)	596, 697
PaeI	GCATGC	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	530
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	7 cut(s)	38, 199, 428, 572, 585, 602, 692
PmaCI	CACGTG	1 cut(s)	499
PmlI	CACGTG	1 cut(s)	499
Ppu21I	YACGTR	2 cut(s)	222, 499
Psp6I	CCWGG	8 cut(s)	23, 127, 184, 241, 376, 433, 586, 651
PspCI	CACGTG	1 cut(s)	499
PspEI	GGTNACC	2 cut(s)	302, 647
PspGI	CCWGG	8 cut(s)	23, 127, 184, 241, 376, 433, 586, 651
PspN4I	GGNNCC	2 cut(s)	32, 240
PspPI	GGNCC	3 cut(s)	502, 524, 548
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
SacII	CCGCGG	1 cut(s)	691
SatI	GCNGC	7 cut(s)	37, 198, 427, 571, 584, 601, 691
Sau3AI	GATC	2 cut(s)	20, 271
Sau96I	GGNCC	3 cut(s)	502, 524, 548
ScrFI	CCNGG	9 cut(s)	25, 129, 186, 243, 378, 435, 527, 588, 653
SduI	GDGCHC	3 cut(s)	135, 468, 668
SetI	ASST	7 cut(s)	32, 49, 224, 309, 444, 501, 704
SfaNI	GCATC	5 cut(s)	52, 59, 256, 337, 669
Sfr303I	CCGCGG	1 cut(s)	691
SgrBI	CCGCGG	1 cut(s)	691
SphI	GCATGC	1 cut(s)	697
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	9 cut(s)	34, 291, 389, 427, 571, 601, 636, 688, 690
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	2 cut(s)	75, 141
StyD4I	CCNGG	9 cut(s)	23, 127, 184, 241, 376, 433, 525, 586, 651
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	4 cut(s)	59, 163, 176, 578
TaiI	ACGT	3 cut(s)	49, 224, 501
TaqI	TCGA	1 cut(s)	212
TasI	AATT	1 cut(s)	154
TauI	GCSGC	4 cut(s)	429, 573, 603, 693
TfiI	GAWTC	1 cut(s)	530
TscAI	CASTG	2 cut(s)	46, 515
TseFI	GTSAC	5 cut(s)	15, 302, 506, 557, 647
TseI	GCWGC	3 cut(s)	36, 197, 583
Tsp45I	GTSAC	5 cut(s)	15, 302, 506, 557, 647
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	2 cut(s)	46, 515
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	2 cut(s)	596, 697
XmaJI	CCTAGG	1 cut(s)	74
XspI	CTAG	2 cut(s)	75, 141
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.