Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Forward (+)

8685514 .. 8692810

Gene Structure 7297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1063900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAGTTCAGACAGCAGGAGCCGGAGCAGGAGCAGGAGCAGGAGCCCTTTGGATCGGAAGATCCGTTCTGATCGCTTTTCCTACCGTGATGCACCTTACAGGAGAGATGGAGGACGTCGGGGTTTCAGCCGAGACAATCTGTGCAAGAACTGCAAACGGCCAGGTCATTTTGCTAGAGAATGCCCGAATGTTGCAATTTGTCACAATTGTGGTCTTCCTGGGCACATTGCTTCAGAGTGTACAACAAAGTCACTATGTTGGAATTGCCGGGAACCGGGTCACATGGCTAGTAACTGCCCAAATGAAGGCATTTGCCACACCTGTGGTAAGGCTGGACATCGCGCCAGAGACTGCACAGCTCCCCCAATGCCACCTGGGGACTTGAGGTTGTGCAACAACTGCTACAAGCAGGGTCATATTGCAGCTGACTGCACAAATGAGAAGGCATGTAACAACTGTAGGAAGACAGGTCACCTGGCACGTGATTGCCCGAATGAACCCATCTGCAACTTATGCAATGTATCTGGCCACGTGGCTAGACAGTGCCCTAGGGCCAATGCTTTGGGAGAGCGTGGAGGTGGAGGAGGTGGTGGTGGTGGTGGAATGGGTGGACGCGGAGGCAGTTACCGTGACGTTGTATGTAGGAACTGCCAGCAACTTGGCCATATGAGCAGGGATTGCATGGGCCCCTTGATGATATGTCACAACTGTGGGGGACGAGGGCACCTGGCATACGAGTGCCCTTCTGGAAGATTCATGGACCGCTACCCCAGGAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

261

Amino Acids

28.45

Weight (kDa)

9.27

Isoelectric Point (pI)

74.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	47 - 63	4.5e-06	Zinc knuckle
zf-CCHC	PF00098	86 - 101	2.5e-06	Zinc knuckle
zf-CCHC	PF00098	149 - 165	4.2e-06	Zinc knuckle
zf-CCHC	PF00098	213 - 227	1.1e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	723
AccII	CGCG	2 cut(s)	342, 615
AciI	CCGC	2 cut(s)	615, 763
AclWI	GGATC	2 cut(s)	55, 60
AcoI	YGGCCR	3 cut(s)	158, 526, 661
AcuI	CTGAAG	1 cut(s)	216
AcvI	CACGTG	2 cut(s)	482, 532
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	2 cut(s)	241, 779
AfiI	CCNNNNNNNGG	2 cut(s)	274, 305
AjnI	CCWGG	6 cut(s)	160, 217, 373, 474, 726, 770
AleI	CACNNNNGTG	3 cut(s)	207, 321, 708
AloI	GAACNNNNNNTCC	2 cut(s)	49, 81
AluBI	AGCT	2 cut(s)	359, 425
AluI	AGCT	2 cut(s)	359, 425
Alw26I	GTCTC	2 cut(s)	126, 342
AlwI	GGATC	2 cut(s)	55, 60
AlwNI	CAGNNNCTG	1 cut(s)	351
AoxI	GGCC	5 cut(s)	158, 526, 552, 661, 685
ApaI	GGGCCC	1 cut(s)	689
ApeKI	GCWGC	1 cut(s)	422
AspA2I	CCTAGG	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	4 cut(s)	552, 685, 686, 760
AsuC2I	CCSGG	2 cut(s)	269, 276
AsuHPI	GGTGA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	760
AvrII	CCTAGG	1 cut(s)	548
BaeGI	GKGCMC	5 cut(s)	225, 548, 689, 726, 743
BalI	TGGCCA	2 cut(s)	528, 663
BanI	GGYRCC	1 cut(s)	723
BanII	GRGCYC	2 cut(s)	47, 689
BbrPI	CACGTG	2 cut(s)	482, 532
BbsI	GAAGAC	2 cut(s)	206, 470
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	2 cut(s)	101, 509
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	6 cut(s)	162, 219, 375, 476, 728, 772
BcnI	CCSGG	2 cut(s)	269, 276
BcoDI	GTCTC	2 cut(s)	126, 342
BfaI	CTAG	4 cut(s)	174, 288, 537, 549
BfmI	CTRYAG	1 cut(s)	457
BisI	GCNGC	1 cut(s)	423
BlnI	CCTAGG	1 cut(s)	548
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	8 cut(s)	162, 219, 269, 276, 375, 476, 728, 772
Bme18I	GGWCC	1 cut(s)	760
BmgT120I	GGNCC	4 cut(s)	552, 685, 686, 760
BmiI	GGNNCC	6 cut(s)	20, 44, 273, 687, 688, 725
BmrFI	CCNGG	8 cut(s)	162, 219, 269, 276, 375, 476, 728, 772
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	206, 470
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	2 cut(s)	269, 276
BsaAI	YACGTR	2 cut(s)	482, 532
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	4 cut(s)	218, 374, 548, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 305
Bse3DI	GCAATG	2 cut(s)	225, 523
BseBI	CCWGG	6 cut(s)	162, 219, 375, 476, 728, 772
BseDI	CCNNGG	4 cut(s)	218, 374, 548, 770
BseLI	CCNNNNNNNGG	2 cut(s)	274, 305
BseMI	GCAATG	2 cut(s)	225, 523
BseRI	GAGGAG	1 cut(s)	597
BseSI	GKGCMC	5 cut(s)	225, 548, 689, 726, 743
BseXI	GCAGC	1 cut(s)	434
BsgI	GTGCAG	2 cut(s)	337, 415
Bsh1236I	CGCG	2 cut(s)	342, 615
BshFI	GGCC	5 cut(s)	160, 528, 554, 663, 687
BshNI	GGYRCC	1 cut(s)	723
BsiSI	CCGG	3 cut(s)	22, 268, 275
BslFI	GGGAC	2 cut(s)	392, 729
BslI	CCNNNNNNNGG	2 cut(s)	274, 305
BsmAI	GTCTC	2 cut(s)	126, 342
BsmFI	GGGAC	2 cut(s)	392, 729
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	5 cut(s)	160, 528, 554, 663, 687
Bsp120I	GGGCCC	1 cut(s)	685
Bsp1286I	GDGCHC	6 cut(s)	47, 225, 548, 689, 726, 743
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	52, 60, 70
BspACI	CCGC	2 cut(s)	615, 763
BspANI	GGCC	5 cut(s)	160, 528, 554, 663, 687
BspFNI	CGCG	2 cut(s)	342, 615
BspLI	GGNNCC	6 cut(s)	20, 44, 273, 687, 688, 725
BspPI	GGATC	2 cut(s)	55, 60
BspT107I	GGYRCC	1 cut(s)	723
BsrDI	GCAATG	2 cut(s)	225, 523
BsrGI	TGTACA	1 cut(s)	239
BssECI	CCNNGG	4 cut(s)	218, 374, 548, 770
BssMI	GATC	3 cut(s)	52, 60, 70
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	548
Bst2UI	CCWGG	6 cut(s)	162, 219, 375, 476, 728, 772
Bst4CI	ACNGT	5 cut(s)	86, 458, 543, 629, 710
BstACI	GRCGYC	1 cut(s)	115
BstAPI	GCANNNNNTGC	4 cut(s)	150, 399, 513, 678
BstAUI	TGTACA	1 cut(s)	239
BstBAI	YACGTR	2 cut(s)	482, 532
BstC8I	GCNNGC	1 cut(s)	653
BstEII	GGTNACC	1 cut(s)	470
BstFNI	CGCG	2 cut(s)	342, 615
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	3 cut(s)	55, 63, 73
BstMAI	GTCTC	2 cut(s)	126, 342
BstMBI	GATC	3 cut(s)	52, 60, 70
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 399, 513, 669, 678
BstNI	CCWGG	6 cut(s)	162, 219, 375, 476, 728, 772
BstNSI	RCATGY	1 cut(s)	450
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	8 cut(s)	160, 217, 267, 274, 373, 474, 726, 770
BstSFI	CTRYAG	1 cut(s)	457
BstSLI	GKGCMC	5 cut(s)	225, 548, 689, 726, 743
BstUI	CGCG	2 cut(s)	342, 615
BstV1I	GCAGC	1 cut(s)	434
BstV2I	GAAGAC	2 cut(s)	206, 470
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	3 cut(s)	323, 562, 659
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	5 cut(s)	160, 528, 554, 663, 687
BtgZI	GCGATG	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	1 cut(s)	653
CaiI	CAGNNNCTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	4 cut(s)	552, 685, 686, 760
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	240, 778
CviAII	CATG	4 cut(s)	283, 447, 682, 757
CviQI	GTAC	2 cut(s)	240, 778
DpnI	GATC	3 cut(s)	54, 62, 72
DpnII	GATC	3 cut(s)	52, 60, 70
EaeI	YGGCCR	3 cut(s)	158, 526, 661
Eco130I	CCWWGG	1 cut(s)	548
Eco24I	GRGCYC	2 cut(s)	47, 689
Eco47I	GGWCC	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	216
Eco72I	CACGTG	2 cut(s)	482, 532
Eco91I	GGTNACC	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	686
EcoO65I	GGTNACC	1 cut(s)	470
EcoRII	CCWGG	6 cut(s)	160, 217, 373, 474, 726, 770
EcoT14I	CCWWGG	1 cut(s)	548
EcoT38I	GRGCYC	2 cut(s)	47, 689
ErhI	CCWWGG	1 cut(s)	548
FaeI	CATG	4 cut(s)	286, 450, 685, 760
FaqI	GGGAC	2 cut(s)	392, 729
FatI	CATG	4 cut(s)	282, 446, 681, 756
FauNDI	CATATG	1 cut(s)	666
Fnu4HI	GCNGC	1 cut(s)	423
FriOI	GRGCYC	2 cut(s)	47, 689
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	4 cut(s)	174, 288, 537, 549
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	5 cut(s)	160, 528, 554, 663, 687
HapII	CCGG	3 cut(s)	22, 268, 275
HgaI	GACGC	1 cut(s)	621
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	286, 450, 685, 760
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HinfI	GANTC	1 cut(s)	753
HpaII	CCGG	3 cut(s)	22, 268, 275
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	240, 611
Hpy188I	TCNGA	4 cut(s)	10, 57, 70, 235
Hpy188III	TCNNGA	1 cut(s)	747
Hpy8I	GTNNAC	2 cut(s)	240, 611
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	3 cut(s)	299, 436, 753
HpyCH4III	ACNGT	5 cut(s)	86, 458, 543, 629, 710
HpyCH4IV	ACGT	4 cut(s)	115, 481, 531, 633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 399, 513, 669, 678
HpySE526I	ACGT	4 cut(s)	115, 481, 531, 633
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	286, 450, 685, 760
HspAI	GCGC	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	52, 60, 70
LmnI	GCTCC	6 cut(s)	18, 24, 30, 36, 42, 364
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	4 cut(s)	174, 288, 537, 549
MaeII	ACGT	4 cut(s)	115, 481, 531, 633
MaeIII	GTNAC	9 cut(s)	200, 249, 278, 290, 449, 470, 623, 629, 701
MalI	GATC	3 cut(s)	54, 62, 72
MboI	GATC	3 cut(s)	52, 60, 70
MboII	GAAGA	4 cut(s)	70, 206, 475, 762
MfeI	CAATTG	1 cut(s)	205
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	6 cut(s)	47, 225, 548, 689, 726, 743
MlsI	TGGCCA	2 cut(s)	528, 663
MluCI	AATT	3 cut(s)	195, 205, 262
MluNI	TGGCCA	2 cut(s)	528, 663
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	8 cut(s)	104, 378, 569, 575, 578, 611, 713, 768
Mox20I	TGGCCA	2 cut(s)	528, 663
MscI	TGGCCA	2 cut(s)	528, 663
MslI	CAYNNNNRTG	4 cut(s)	207, 321, 708, 736
Msp20I	TGGCCA	2 cut(s)	528, 663
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	22, 268, 275
MspR9I	CCNGG	8 cut(s)	162, 219, 269, 276, 375, 476, 728, 772
MunI	CAATTG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	6 cut(s)	162, 219, 375, 476, 728, 772
MvnI	CGCG	2 cut(s)	342, 615
MwoI	GCNNNNNNNGC	5 cut(s)	150, 399, 513, 669, 678
NciI	CCSGG	2 cut(s)	269, 276
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	3 cut(s)	52, 60, 70
NlaIII	CATG	4 cut(s)	286, 450, 685, 760
NlaIV	GGNNCC	6 cut(s)	20, 44, 273, 687, 688, 725
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	6 cut(s)	200, 249, 278, 470, 629, 701
NspI	RCATGY	1 cut(s)	450
OliI	CACNNNNGTG	3 cut(s)	207, 321, 708
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	753
PkrI	GCNGC	1 cut(s)	424
PmaCI	CACGTG	2 cut(s)	482, 532
PmlI	CACGTG	2 cut(s)	482, 532
Ppu21I	YACGTR	2 cut(s)	482, 532
Psp6I	CCWGG	6 cut(s)	160, 217, 373, 474, 726, 770
PspCI	CACGTG	2 cut(s)	482, 532
PspEI	GGTNACC	1 cut(s)	470
PspGI	CCWGG	6 cut(s)	160, 217, 373, 474, 726, 770
PspN4I	GGNNCC	6 cut(s)	20, 44, 273, 687, 688, 725
PspOMI	GGGCCC	1 cut(s)	685
PspPI	GGNCC	4 cut(s)	552, 685, 686, 760
PstNI	CAGNNNCTG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	241, 779
RsaNI	GTAC	2 cut(s)	240, 778
RseI	CAYNNNNRTG	4 cut(s)	207, 321, 708, 736
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	52, 60, 70
Sau96I	GGNCC	4 cut(s)	552, 685, 686, 760
ScrFI	CCNGG	8 cut(s)	162, 219, 269, 276, 375, 476, 728, 772
SduI	GDGCHC	6 cut(s)	47, 225, 548, 689, 726, 743
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	760
SmiMI	CAYNNNNRTG	4 cut(s)	207, 321, 708, 736
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	3 cut(s)	195, 205, 262
SsiI	CCGC	2 cut(s)	615, 763
SspMI	CTAG	4 cut(s)	174, 288, 537, 549
StyD4I	CCNGG	8 cut(s)	160, 217, 267, 274, 373, 474, 726, 770
StyI	CCWWGG	1 cut(s)	548
TaaI	ACNGT	5 cut(s)	86, 458, 543, 629, 710
TaiI	ACGT	4 cut(s)	118, 484, 534, 636
TasI	AATT	3 cut(s)	195, 205, 262
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	753
TscAI	CASTG	1 cut(s)	548
TseFI	GTSAC	6 cut(s)	200, 249, 278, 470, 629, 701
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	6 cut(s)	200, 249, 278, 470, 629, 701
TspDTI	ATGAA	3 cut(s)	318, 510, 745
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	760
XceI	RCATGY	1 cut(s)	450
XmaJI	CCTAGG	1 cut(s)	548
XspI	CTAG	4 cut(s)	174, 288, 537, 549
ZraI	GACGTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.