Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Reverse (-)

57576874 .. 57578402

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGCCAAAGCCCCTCACGAGCCAGGAGGTTTCGCAGCAGTGAACGTGCATCTTACCGTGATGCCCCATATCCCAGGGAGCGCCGTGTTAATAGGAATGATTTTCTTTGCAACAAATGTAAACGACCAGGGCATTTTGCCAGGGATTGCCCGAATATGACTGTCTGCAACAACTGTGGACTTCCTGGCCACATTGCTGCTGAATGCAACTCAACCGCTACTTGTTGGAACTGCAAGGAGCCTGGACATCTTGCAAGCCAATGCCCCAACGATCCAGTCTGCCATATGTGCGGCAAGATGGGTCACCTTGCTCGTGATTGCTCAAGCCCATCTCTTCCATCCCATGATGCGAGGCTATGCAACAACTGCTACAAGCCAGGTCACATTGCAGTCACTTGCACCAATGAGAAGGCATGCAACAACTGCCGCAAGCCAGGCCACCTCGCCCGCGACTGCCCCAACGAACCCATCTGCAACATCTGCAACATATCAGGCCATGTGGCCCGTCACTGCCCCAAGTCAGGATCAAACATGGGAGGAGGAGGAGGCCCTTTCCGCGACATCATCTGCCGTAACTGCGGCCAGCCAGGGCACGTCAGCCGCGAGTGTGTGTCCATTGTCATCTGCAACAACTGCGGCGGAAGGGGTCACCAAGCTTATGAGTGCCCTTCGGCCTTGATGTATGATCGCGGCGGGCGTAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

235

Amino Acids

25.77

Weight (kDa)

8.96

Isoelectric Point (pI)

70.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	37 - 52	2.9e-06	Zinc knuckle
zf-CCHC	PF00098	74 - 90	2.1e-06	Zinc knuckle
zf-CCHC	PF00098	138 - 154	2.1e-06	Zinc knuckle
zf-CCHC	PF00098	189 - 203	8.9e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	450, 558, 603, 690
AclWI	GGATC	2 cut(s)	266, 532
AcoI	YGGCCR	2 cut(s)	187, 580
AfiI	CCNNNNNNNGG	1 cut(s)	521
AjiI	CACGTC	1 cut(s)	595
AjnI	CCWGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 586
AluBI	AGCT	1 cut(s)	656
AluI	AGCT	1 cut(s)	656
AlwI	GGATC	2 cut(s)	266, 532
AoxI	GGCC	7 cut(s)	187, 436, 493, 501, 547, 580, 672
ApeKI	GCWGC	2 cut(s)	36, 197
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	502, 548
AsuHPI	GGTGA	2 cut(s)	296, 641
BaeGI	GKGCMC	2 cut(s)	594, 668
BalI	TGGCCA	1 cut(s)	189
BauI	CACGAG	2 cut(s)	18, 312
BbvI	GCAGC	2 cut(s)	48, 184
BccI	CCATC	4 cut(s)	292, 337, 346, 476
BceAI	ACGGC	2 cut(s)	69, 555
BciT130I	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 588
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	8 cut(s)	37, 198, 292, 427, 580, 601, 637, 691
BlsI	GCNGC	8 cut(s)	38, 199, 293, 428, 581, 602, 638, 692
Bme1390I	CCNGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 588
BmgBI	CACGTC	1 cut(s)	595
BmgT120I	GGNCC	2 cut(s)	502, 548
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 588
BmsI	GCATC	3 cut(s)	52, 59, 337
BpuEI	CTTGAG	1 cut(s)	307
BsaJI	CCNNGG	5 cut(s)	74, 75, 128, 141, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	2 cut(s)	192, 384
BseBI	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 588
BseDI	CCNNGG	5 cut(s)	74, 75, 128, 141, 587
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	2 cut(s)	192, 384
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	3 cut(s)	552, 555, 558
BseSI	GKGCMC	2 cut(s)	594, 668
BseXI	GCAGC	2 cut(s)	48, 184
Bsh1236I	CGCG	4 cut(s)	450, 558, 603, 690
BshFI	GGCC	7 cut(s)	189, 438, 495, 503, 549, 582, 674
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	7 cut(s)	189, 438, 495, 503, 549, 582, 674
Bsp1286I	GDGCHC	2 cut(s)	594, 668
Bsp143I	GATC	3 cut(s)	271, 524, 685
BspANI	GGCC	7 cut(s)	189, 438, 495, 503, 549, 582, 674
BspFNI	CGCG	4 cut(s)	450, 558, 603, 690
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	266, 532
BsrDI	GCAATG	2 cut(s)	192, 384
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	5 cut(s)	74, 75, 128, 141, 587
BssMI	GATC	3 cut(s)	271, 524, 685
BssSI	CACGAG	2 cut(s)	18, 312
Bst2BI	CACGAG	2 cut(s)	18, 312
Bst2UI	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 588
Bst4CI	ACNGT	3 cut(s)	59, 163, 176
Bst6I	CTCTTC	1 cut(s)	339
BstAPI	GCANNNNNTGC	4 cut(s)	366, 423, 480, 633
BstC8I	GCNNGC	6 cut(s)	256, 415, 431, 448, 584, 695
BstEII	GGTNACC	2 cut(s)	302, 647
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	4 cut(s)	450, 558, 603, 690
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	274, 527, 688
BstMBI	GATC	3 cut(s)	271, 524, 685
BstMWI	GCNNNNNNNGC	8 cut(s)	288, 366, 423, 435, 480, 555, 576, 633
BstNI	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 588
BstNSI	RCATGY	1 cut(s)	417
BstPI	GGTNACC	2 cut(s)	302, 647
BstSCI	CCNGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 586
BstSLI	GKGCMC	2 cut(s)	594, 668
BstUI	CGCG	4 cut(s)	450, 558, 603, 690
BstV1I	GCAGC	2 cut(s)	48, 184
BsuRI	GGCC	7 cut(s)	189, 438, 495, 503, 549, 582, 674
BtrI	CACGTC	1 cut(s)	595
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	2 cut(s)	46, 508
BtsIMutI	CAGTG	2 cut(s)	46, 508
Cac8I	GCNNGC	6 cut(s)	256, 415, 431, 448, 584, 695
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	502, 548
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	4 cut(s)	344, 414, 497, 532
DpnI	GATC	3 cut(s)	273, 526, 687
DpnII	GATC	3 cut(s)	271, 524, 685
EaeI	YGGCCR	2 cut(s)	187, 580
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	654
Eco91I	GGTNACC	2 cut(s)	302, 647
EcoO109I	RGGNCCY	1 cut(s)	548
EcoO65I	GGTNACC	2 cut(s)	302, 647
EcoRII	CCWGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 586
FaeI	CATG	4 cut(s)	347, 417, 500, 535
FatI	CATG	4 cut(s)	343, 413, 496, 531
FauI	CCCGC	2 cut(s)	455, 686
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	8 cut(s)	37, 198, 292, 427, 580, 601, 637, 691
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	8 cut(s)	37, 198, 292, 427, 580, 601, 637, 691
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	8 cut(s)	37, 198, 292, 427, 580, 601, 637, 691
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	7 cut(s)	189, 438, 495, 503, 549, 582, 674
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	347, 417, 500, 535
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	654
HphI	GGTGA	2 cut(s)	296, 641
Hpy166II	GTNNAC	3 cut(s)	44, 122, 179
Hpy188III	TCNNGA	3 cut(s)	18, 314, 522
Hpy8I	GTNNAC	3 cut(s)	44, 122, 179
HpyAV	CCTTC	3 cut(s)	403, 636, 678
HpyCH4III	ACNGT	3 cut(s)	59, 163, 176
HpyCH4IV	ACGT	2 cut(s)	46, 594
HpyF10VI	GCNNNNNNNGC	8 cut(s)	288, 366, 423, 435, 480, 555, 576, 633
HpySE526I	ACGT	2 cut(s)	46, 594
Hsp92II	CATG	4 cut(s)	347, 417, 500, 535
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	271, 524, 685
LmnI	GCTCC	2 cut(s)	79, 238
Lsp1109I	GCAGC	2 cut(s)	48, 184
LweI	GCATC	3 cut(s)	52, 59, 337
MaeII	ACGT	2 cut(s)	46, 594
MaeIII	GTNAC	6 cut(s)	302, 380, 391, 506, 572, 647
MalI	GATC	3 cut(s)	273, 526, 687
MboI	GATC	3 cut(s)	271, 524, 685
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	594, 668
MlsI	TGGCCA	1 cut(s)	189
MluNI	TGGCCA	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	8 cut(s)	21, 25, 345, 452, 530, 533, 536, 539
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	189
MspR9I	CCNGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 588
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 588
MvnI	CGCG	4 cut(s)	450, 558, 603, 690
MwoI	GCNNNNNNNGC	8 cut(s)	288, 366, 423, 435, 480, 555, 576, 633
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	3 cut(s)	271, 524, 685
NlaIII	CATG	4 cut(s)	347, 417, 500, 535
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	5 cut(s)	302, 380, 391, 506, 647
NspI	RCATGY	1 cut(s)	417
PaeI	GCATGC	1 cut(s)	417
PasI	CCCWGGG	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	2 cut(s)	600, 694
PctI	GAATGC	1 cut(s)	209
PkrI	GCNGC	8 cut(s)	38, 199, 293, 428, 581, 602, 638, 692
Psp6I	CCWGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 586
PspEI	GGTNACC	2 cut(s)	302, 647
PspGI	CCWGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 586
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	502, 548
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	8 cut(s)	37, 198, 292, 427, 580, 601, 637, 691
Sau3AI	GATC	3 cut(s)	271, 524, 685
Sau96I	GGNCC	2 cut(s)	502, 548
ScrFI	CCNGG	9 cut(s)	25, 76, 129, 142, 186, 243, 378, 435, 588
SduI	GDGCHC	2 cut(s)	594, 668
SetI	ASST	8 cut(s)	32, 49, 309, 382, 444, 597, 658, 704
SfaNI	GCATC	3 cut(s)	52, 59, 337
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SphI	GCATGC	1 cut(s)	417
StyD4I	CCNGG	9 cut(s)	23, 74, 127, 140, 184, 241, 376, 433, 586
TaaI	ACNGT	3 cut(s)	59, 163, 176
TaiI	ACGT	2 cut(s)	49, 597
TauI	GCSGC	6 cut(s)	294, 429, 582, 603, 639, 693
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	2 cut(s)	46, 515
TseFI	GTSAC	5 cut(s)	302, 380, 391, 506, 647
TseI	GCWGC	2 cut(s)	36, 197
Tsp45I	GTSAC	5 cut(s)	302, 380, 391, 506, 647
TspRI	CASTG	2 cut(s)	46, 515
XceI	RCATGY	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.