Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002926

Physical Location & Seq

Genomic Coordinates Forward (+)

9198261 .. 9203308

Gene Structure 5048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10323.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGATATTGGGTGTGGTTGTAATGTGGGTGTGGCTGTGATGTGGACAGGGAGGAGGCAGTGGTGGTGGTGGTGGTGGTGTTTTTCCCTCAAATCAGTGGAGCTAGGTCATAATAAGAAATTAAACATAAGTATGGACAGCAGGAGCCTCAGCAGGAGCAGGAGCAGGAGCAGAAGCAGGAGCAGGAGCCCTACGGATCGTAAGATGCGTACTGATCGCTTTTCCTATCGCGATGCACCTTACAGGAGAGATGGTGGTCGTCGGGGTGGTGGTTTCAGCCGAGACAATCTATGCAAGAATTGCAAAAGACCTGGCCATTTTGCTAGAGAATGCCCTAATGTTGCAATTTGTCACAACTGTAGTCTTCCCGGGCACATTGCCTCAGAGTGTACCACAAAGTCACTATGTTGGAATTGCCGCGAACCTGGTCACATGGCTAGCAACTGTCCAAATGAGGGCATCTGCCACACCTGTGGCAAGGCTGGACACCGTGCTAGAGACTGCACTGCTGCCCCAATGCCGCCTGGGGACTTGAGGTTGTGCAACAATTGCTACAAGCAGGGTCATATTGCAGTTGACTGCACAAATGAGAAGGCATGCAACAACTGTCGGAAGACAGGTCACCTGGCTCGTGATTGCCCAAATGAACCAATCTGTAACAATTGCAATGTATCTGGGCATGTGGCCAGGCAGTGCCCCAGAGCCAATGGTTTGGCAGAGAGGGGAGGTGGTGGTGGTGGTGGTGGTGCAGTTCGCAGCGGGGGTGGCGGTGGCGGCTACCACCGTGACATTGTATGTAGAAACTGCCAGCAACTTGGGCATATGAGCAGGGATTGCATGGGCCCCTTGATGATCTGTCATAACTGTGGGGGGAGAGGACACCTCGCATACGAGTGCCCTTCTGGTAGGTTCATGGATCGCTACCCCAGGAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-CCHC_3 zf-CCHC_4

Protein Analysis

313

Amino Acids

34.57

Weight (kDa)

9.39

Isoelectric Point (pI)

71.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	97 - 113	5.6e-06	Zinc knuckle
zf-CCHC	PF00098	136 - 151	3.1e-06	Zinc knuckle
zf-CCHC	PF00098	199 - 215	5.3e-06	Zinc knuckle
zf-CCHC	PF00098	265 - 279	1.3e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75560 AT1G75560
fragaria_vesca	FvH4_2g10323 FvH4_2g10323 FvH4_7g21972
malus_domestica	MD00G1040200.v1.1 MD01G1124300.v1.1 MD10G1063900.v1.1
prunus_persica	Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.2G231800_v2.0.a1 Prupe.8G085500_v2.0.a1
pyrus_communis	pycom01g15080 pycom05g04680 pycom10g04940
rosa_chinensis	RchiOBHm_Chr1g0366331 RchiOBHm_Chr6g0267601
rosa_roxburghii	Rroxscaffold_4G00289990 Rroxscaffold_4G00290250 Rroxscaffold_7G00200570
rosa_rugosa	Rorug01G0329000 Rorug06G0033800
rosa_samantha	Rh1AG337200 Rh1BG298700 Rh1CG314000 Rh1DG330200 Rh6AG155500 Rh6BG156800 Rh6CG152400 Rh6DG142000
rosa_wichuraiana	Rw1G029890 Rw6G013360 Rw6G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	231, 420
AciI	CCGC	5 cut(s)	418, 521, 759, 768, 774
AclWI	GGATC	2 cut(s)	204, 924
AcoI	YGGCCR	2 cut(s)	313, 684
AfaI	GTAC	3 cut(s)	211, 391, 935
AfiI	CCNNNNNNNGG	1 cut(s)	455
AjnI	CCWGG	6 cut(s)	310, 424, 523, 624, 686, 926
AleI	CACNNNNGTG	1 cut(s)	471
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	276, 492
AlwI	GGATC	2 cut(s)	204, 924
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	3 cut(s)	313, 684, 841
ApaI	GGGCCC	1 cut(s)	845
ApeKI	GCWGC	2 cut(s)	509, 756
AspS9I	GGNCC	2 cut(s)	841, 842
AsuC2I	CCSGG	2 cut(s)	369, 370
AsuHPI	GGTGA	1 cut(s)	614
AsuNHI	GCTAGC	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	368
BaeGI	GKGCMC	4 cut(s)	375, 698, 845, 899
BalI	TGGCCA	2 cut(s)	315, 686
BanII	GRGCYC	2 cut(s)	191, 845
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	2 cut(s)	356, 620
BbvCI	CCTCAGC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	496, 768
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	6 cut(s)	312, 426, 525, 626, 688, 928
BcnI	CCSGG	2 cut(s)	369, 370
BcoDI	GTCTC	2 cut(s)	276, 492
BfaI	CTAG	4 cut(s)	104, 324, 438, 495
BfmI	CTRYAG	1 cut(s)	358
BisI	GCNGC	5 cut(s)	418, 510, 521, 757, 775
BlsI	GCNGC	5 cut(s)	419, 511, 522, 758, 776
Bme1390I	CCNGG	8 cut(s)	312, 369, 370, 426, 525, 626, 688, 928
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	841, 842
BmiI	GGNNCC	4 cut(s)	146, 188, 843, 844
BmrFI	CCNGG	8 cut(s)	312, 369, 370, 426, 525, 626, 688, 928
BmsI	GCATC	3 cut(s)	195, 223, 468
BmtI	GCTAGC	1 cut(s)	441
BpiI	GAAGAC	2 cut(s)	356, 620
BplI	GAGNNNNNCTC	2 cut(s)	867, 899
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	553
BpuMI	CCSGG	2 cut(s)	369, 370
BsaJI	CCNNGG	3 cut(s)	368, 524, 926
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	375, 673
BseBI	CCWGG	6 cut(s)	312, 426, 525, 626, 688, 928
BseDI	CCNNGG	3 cut(s)	368, 524, 926
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	2 cut(s)	375, 673
BseMII	CTCAG	2 cut(s)	163, 396
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	4 cut(s)	375, 698, 845, 899
BseXI	GCAGC	2 cut(s)	496, 768
BsgI	GTGCAG	3 cut(s)	487, 565, 768
Bsh1236I	CGCG	2 cut(s)	231, 420
BshFI	GGCC	3 cut(s)	315, 686, 843
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	276, 492
BsmFI	GGGAC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	315, 686, 843
BsoBI	CYCGRG	1 cut(s)	368
Bsp120I	GGGCCC	1 cut(s)	841
Bsp1286I	GDGCHC	5 cut(s)	191, 375, 698, 845, 899
Bsp143I	GATC	4 cut(s)	196, 214, 852, 916
Bsp68I	TCGCGA	1 cut(s)	231
BspACI	CCGC	5 cut(s)	418, 521, 759, 768, 774
BspANI	GGCC	3 cut(s)	315, 686, 843
BspCNI	CTCAG	2 cut(s)	162, 395
BspFNI	CGCG	2 cut(s)	231, 420
BspLI	GGNNCC	4 cut(s)	146, 188, 843, 844
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	2 cut(s)	204, 924
BsrDI	GCAATG	2 cut(s)	375, 673
BssECI	CCNNGG	3 cut(s)	368, 524, 926
BssMI	GATC	4 cut(s)	196, 214, 852, 916
BssSI	CACGAG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	6 cut(s)	312, 426, 525, 626, 688, 928
Bst4CI	ACNGT	6 cut(s)	359, 446, 491, 608, 785, 866
BstAPI	GCANNNNNTGC	3 cut(s)	300, 549, 834
BstC8I	GCNNGC	3 cut(s)	439, 598, 809
BstDEI	CTNAG	2 cut(s)	149, 382
BstEII	GGTNACC	1 cut(s)	620
BstFNI	CGCG	2 cut(s)	231, 420
BstKTI	GATC	4 cut(s)	199, 217, 855, 919
BstMAI	GTCTC	2 cut(s)	276, 492
BstMBI	GATC	4 cut(s)	196, 214, 852, 916
BstMWI	GCNNNNNNNGC	6 cut(s)	300, 549, 765, 774, 817, 834
BstNI	CCWGG	6 cut(s)	312, 426, 525, 626, 688, 928
BstNSI	RCATGY	2 cut(s)	600, 683
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	8 cut(s)	310, 367, 368, 424, 523, 624, 686, 926
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	4 cut(s)	375, 698, 845, 899
BstUI	CGCG	2 cut(s)	231, 420
BstV1I	GCAGC	2 cut(s)	496, 768
BstV2I	GAAGAC	2 cut(s)	356, 620
BstXI	CCANNNNNNTGG	3 cut(s)	473, 712, 815
BsuRI	GGCC	3 cut(s)	315, 686, 843
BtgZI	GCGATG	1 cut(s)	246
BtsI	GCAGTG	3 cut(s)	65, 504, 698
BtsIMutI	CAGTG	4 cut(s)	65, 102, 504, 698
BtuMI	TCGCGA	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	439, 598, 809
Cfr13I	GGNCC	2 cut(s)	841, 842
Cfr9I	CCCGGG	1 cut(s)	368
CsiI	ACCWGGT	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	210, 390, 934
CviAII	CATG	5 cut(s)	433, 597, 680, 838, 913
CviQI	GTAC	3 cut(s)	210, 390, 934
DdeI	CTNAG	2 cut(s)	149, 382
DpnI	GATC	4 cut(s)	198, 216, 854, 918
DpnII	GATC	4 cut(s)	196, 214, 852, 916
EaeI	YGGCCR	2 cut(s)	313, 684
Eco24I	GRGCYC	2 cut(s)	191, 845
Eco88I	CYCGRG	1 cut(s)	368
Eco91I	GGTNACC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	842
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	6 cut(s)	310, 424, 523, 624, 686, 926
EcoT38I	GRGCYC	2 cut(s)	191, 845
FaeI	CATG	5 cut(s)	436, 600, 683, 841, 916
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	5 cut(s)	432, 596, 679, 837, 912
FauI	CCCGC	1 cut(s)	752
FauNDI	CATATG	1 cut(s)	822
Fnu4HI	GCNGC	5 cut(s)	418, 510, 521, 757, 775
FriOI	GRGCYC	2 cut(s)	191, 845
Fsp4HI	GCNGC	5 cut(s)	418, 510, 521, 757, 775
FspBI	CTAG	4 cut(s)	104, 324, 438, 495
GluI	GCNGC	5 cut(s)	418, 510, 521, 757, 775
HaeIII	GGCC	3 cut(s)	315, 686, 843
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	5 cut(s)	436, 600, 683, 841, 916
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	3 cut(s)	45, 390, 577
Hpy188I	TCNGA	2 cut(s)	385, 612
Hpy188III	TCNNGA	2 cut(s)	230, 632
Hpy8I	GTNNAC	3 cut(s)	45, 390, 577
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	586, 909
HpyCH4III	ACNGT	6 cut(s)	359, 446, 491, 608, 785, 866
HpyF10VI	GCNNNNNNNGC	6 cut(s)	300, 549, 765, 774, 817, 834
HpyF3I	CTNAG	2 cut(s)	149, 382
Hsp92II	CATG	5 cut(s)	436, 600, 683, 841, 916
Kzo9I	GATC	4 cut(s)	196, 214, 852, 916
LmnI	GCTCC	7 cut(s)	100, 144, 156, 162, 168, 180, 186
Lsp1109I	GCAGC	2 cut(s)	496, 768
LweI	GCATC	3 cut(s)	195, 223, 468
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	4 cut(s)	104, 324, 438, 495
MaeIII	GTNAC	6 cut(s)	350, 399, 428, 620, 656, 785
MalI	GATC	4 cut(s)	198, 216, 854, 918
MboI	GATC	4 cut(s)	196, 214, 852, 916
MboII	GAAGA	2 cut(s)	356, 625
MfeI	CAATTG	2 cut(s)	547, 661
MhlI	GDGCHC	5 cut(s)	191, 375, 698, 845, 899
MlsI	TGGCCA	2 cut(s)	315, 686
MluCI	AATT	6 cut(s)	119, 298, 345, 412, 547, 661
MluNI	TGGCCA	2 cut(s)	315, 686
MmeI	TCCRAC	2 cut(s)	389, 590
Mox20I	TGGCCA	2 cut(s)	315, 686
MscI	TGGCCA	2 cut(s)	315, 686
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	4 cut(s)	131, 471, 864, 892
Msp20I	TGGCCA	2 cut(s)	315, 686
MspA1I	CMGCKG	1 cut(s)	759
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	8 cut(s)	312, 369, 370, 426, 525, 626, 688, 928
MunI	CAATTG	2 cut(s)	547, 661
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	6 cut(s)	312, 426, 525, 626, 688, 928
MvnI	CGCG	2 cut(s)	231, 420
MwoI	GCNNNNNNNGC	6 cut(s)	300, 549, 765, 774, 817, 834
NciI	CCSGG	2 cut(s)	369, 370
NdeI	CATATG	1 cut(s)	822
NdeII	GATC	4 cut(s)	196, 214, 852, 916
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	5 cut(s)	436, 600, 683, 841, 916
NlaIV	GGNNCC	4 cut(s)	146, 188, 843, 844
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	5 cut(s)	350, 399, 428, 620, 785
NruI	TCGCGA	1 cut(s)	231
NspI	RCATGY	2 cut(s)	600, 683
OliI	CACNNNNGTG	1 cut(s)	471
PaeI	GCATGC	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PctI	GAATGC	1 cut(s)	335
PkrI	GCNGC	5 cut(s)	419, 511, 522, 758, 776
Psp6I	CCWGG	6 cut(s)	310, 424, 523, 624, 686, 926
PspEI	GGTNACC	1 cut(s)	620
PspGI	CCWGG	6 cut(s)	310, 424, 523, 624, 686, 926
PspN4I	GGNNCC	4 cut(s)	146, 188, 843, 844
PspOMI	GGGCCC	1 cut(s)	841
PspPI	GGNCC	2 cut(s)	841, 842
RruI	TCGCGA	1 cut(s)	231
RsaI	GTAC	3 cut(s)	211, 391, 935
RsaNI	GTAC	3 cut(s)	210, 390, 934
RseI	CAYNNNNRTG	4 cut(s)	131, 471, 864, 892
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	5 cut(s)	418, 510, 521, 757, 775
Sau3AI	GATC	4 cut(s)	196, 214, 852, 916
Sau96I	GGNCC	2 cut(s)	841, 842
ScrFI	CCNGG	8 cut(s)	312, 369, 370, 426, 525, 626, 688, 928
SduI	GDGCHC	5 cut(s)	191, 375, 698, 845, 899
SexAI	ACCWGGT	1 cut(s)	424
SfaNI	GCATC	3 cut(s)	195, 223, 468
SfcI	CTRYAG	1 cut(s)	358
SmaI	CCCGGG	1 cut(s)	370
SmiMI	CAYNNNNRTG	4 cut(s)	131, 471, 864, 892
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
SphI	GCATGC	1 cut(s)	600
Sse9I	AATT	6 cut(s)	119, 298, 345, 412, 547, 661
SsiI	CCGC	5 cut(s)	418, 521, 759, 768, 774
SspMI	CTAG	4 cut(s)	104, 324, 438, 495
StyD4I	CCNGG	8 cut(s)	310, 367, 368, 424, 523, 624, 686, 926
TaaI	ACNGT	6 cut(s)	359, 446, 491, 608, 785, 866
TasI	AATT	6 cut(s)	119, 298, 345, 412, 547, 661
TauI	GCSGC	3 cut(s)	420, 523, 777
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	4 cut(s)	65, 102, 511, 698
TseFI	GTSAC	5 cut(s)	350, 399, 428, 620, 785
TseI	GCWGC	2 cut(s)	509, 756
Tsp45I	GTSAC	5 cut(s)	350, 399, 428, 620, 785
TspDTI	ATGAA	2 cut(s)	660, 901
TspGWI	ACGGA	1 cut(s)	209
TspMI	CCCGGG	1 cut(s)	368
TspRI	CASTG	4 cut(s)	65, 102, 511, 698
XceI	RCATGY	2 cut(s)	600, 683
XmaI	CCCGGG	1 cut(s)	368
XspI	CTAG	4 cut(s)	104, 324, 438, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.