Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005314

Physical Location & Seq

Genomic Coordinates Forward (+)

79779 .. 81710

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGCCAGAAGAAGATGTTGTTGATCAGAAAAGATACTTTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTACTTGAATATCAGGCGTGTGTCAAGAGGATCCAAGATGATGAGTCTGGCCACAAACATTGCACTGGGCAATATTTTGATTACTGGCATTGTGTTGACAAATGTGTAAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005758 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016021 GO:0016043 GO:0016310 GO:0016491 GO:0016679 GO:0016681 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0034399 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044877 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0051259 GO:0051291 GO:0055086 GO:0055114 GO:0065003 GO:0070013 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko00190 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04260 ko04714 ko04920 ko04932 ko05010 ko05012 ko05016 map00061 map00071 map00190 map01100 map01212 map02024 map03320 map04146 map04216 map04260 map04714 map04920 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_hinge

Protein Analysis

62

Amino Acids

7.37

Weight (kDa)

5.48

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_hinge	PF02320	8 - 61	1.2e-17	Ubiquinol-cytochrome C reductase hinge protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15120 AT2G01090 AT2G01090 AT2G01090 AT2G01090
fragaria_vesca	FvH4_5g30500 FvH4_7g02900 FvH4_7g02900
malus_domestica	MD05G1023300.v1.1
prunus_persica	Prupe.1G560700_v2.0.a1 Prupe.8G028000_v2.0.a1 Prupe.8G028000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225181
rosa_laevigata	RLG00000001830
rosa_multiflora	Rmu_sc0002766.1_g000019
rosa_roxburghii	Rroxscaffold_3G00233930 Rroxscaffold_3G00234030
rosa_rugosa	Rorug01G0040300 Rorug07G0227900 Rorug07G0228400
rosa_samantha	Rh1BG048500 Rh1CG058800 Rh1DG062700 Rh7AG375600 Rh7CG394100 Rh7DG374200
rosa_wichuraiana	Rw1G004910 Rw7G031550 Rw7G031580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	97, 110
AcoI	YGGCCR	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	80
AlwI	GGATC	2 cut(s)	97, 110
AoxI	GGCC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	123
BamHI	GGATCC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
Bse1I	ACTGG	2 cut(s)	142, 161
Bse3DI	GCAATG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	142, 161
BshFI	GGCC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	22, 102
BspANI	GGCC	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	97, 110
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	142, 161
BssMI	GATC	2 cut(s)	22, 102
BstKTI	GATC	2 cut(s)	25, 105
BstMBI	GATC	2 cut(s)	22, 102
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	135
CspCI	CAANNNNNGTGG	2 cut(s)	113, 148
CviJI	RGCY	2 cut(s)	70, 123
CviKI_1	RGCY	2 cut(s)	70, 123
DpnI	GATC	2 cut(s)	24, 104
DpnII	GATC	2 cut(s)	22, 102
EaeI	YGGCCR	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	44, 116
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	51, 135
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	22, 102
LpnPI	CCDG	5 cut(s)	18, 71, 105, 123, 142
MalI	GATC	2 cut(s)	24, 104
MboI	GATC	2 cut(s)	22, 102
MboII	GAAGA	2 cut(s)	20, 23
MflI	RGATCY	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	123
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	34, 93
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	123
NdeII	GATC	2 cut(s)	22, 102
NlaIV	GGNNCC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	22, 102
SchI	GAGTC	1 cut(s)	125
SspI	AATATT	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	44
TscAI	CASTG	1 cut(s)	142
TspRI	CASTG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.