Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005314

Physical Location & Seq

Genomic Coordinates Reverse (-)

48660887 .. 48679439

Gene Structure 18553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG375600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCACCTACAAAGAGGAAGATTTGGATTCGCTTCACAGGTTCACCTAGTCTATGTGAAAGGAGGTTAGATTGTCCGCTCTACTGTTTTCTTTGCCCCAAGTCCACGATTTCTCAGGTAGCTTGGAGGCTCCTTCGTACCGAGTTTTGTGTCTTCTCAGCTTCTATCGGTATCTTTGCTAATATACTCCAAATAGAGTATAACTTGAGTCTTCAGGCGGACGAGGAACCTGTTGATCAGAAGAAGTACCTTGAAGACTCCTGCAAGCCGAAATGTGTCAAACCATTTCTCCAATATCAGGCATGTGTTAAGAGGATCGAAGGTGACGAAAGCGGCCACAAGCATTGTACTGGACAATATTTTGACTACTGGTCTTGTGTAGACAAATGTCTAAAACAGTCTCCAATGCAGGTTGCACCAAAGCTCTTTACTAAGCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_hinge

Protein Analysis

147

Amino Acids

17.04

Weight (kDa)

8.86

Isoelectric Point (pI)

65.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_hinge	PF02320	79 - 147	3.4e-16	Ubiquinol-cytochrome C reductase hinge protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15120 AT2G01090 AT2G01090 AT2G01090 AT2G01090
fragaria_vesca	FvH4_5g30500 FvH4_7g02900 FvH4_7g02900
malus_domestica	MD05G1023300.v1.1
prunus_persica	Prupe.1G560700_v2.0.a1 Prupe.8G028000_v2.0.a1 Prupe.8G028000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225181
rosa_laevigata	RLG00000001830
rosa_multiflora	Rmu_sc0002766.1_g000019
rosa_roxburghii	Rroxscaffold_3G00233930 Rroxscaffold_3G00234030
rosa_rugosa	Rorug01G0040300 Rorug07G0227900 Rorug07G0228400
rosa_samantha	Rh1BG048500 Rh1CG058800 Rh1DG062700 Rh7AG375600 Rh7CG394100 Rh7DG374200
rosa_wichuraiana	Rw1G004910 Rw7G031550 Rw7G031580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	3 cut(s)	77, 218, 333
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	3 cut(s)	139, 248, 349
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	254
AhdI	GACNNNNNGTC	1 cut(s)	370
AluBI	AGCT	4 cut(s)	122, 161, 424, 436
AluI	AGCT	4 cut(s)	122, 161, 424, 436
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	36, 335
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	3 cut(s)	145, 203, 261
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmiI	GGNNCC	3 cut(s)	6, 131, 228
BoxI	GACNNNNGTC	1 cut(s)	387
BpiI	GAAGAC	3 cut(s)	145, 203, 261
BpuEI	CTTGAG	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	355, 374
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	128, 171
BseNI	ACTGG	2 cut(s)	355, 374
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	235, 315
BspACI	CCGC	3 cut(s)	77, 218, 333
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	2 cut(s)	127, 170
BspLI	GGNNCC	3 cut(s)	6, 131, 228
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	355, 374
BssMI	GATC	2 cut(s)	235, 315
Bst4CI	ACNGT	2 cut(s)	86, 399
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	114, 157, 432
BstKTI	GATC	2 cut(s)	238, 318
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	2 cut(s)	235, 315
BstNSI	RCATGY	1 cut(s)	306
BstPAI	GACNNNNGTC	1 cut(s)	387
BstV2I	GAAGAC	3 cut(s)	145, 203, 261
BsuRI	GGCC	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	138, 247, 348
CspCI	CAANNNNNGTGG	2 cut(s)	326, 361
CviAII	CATG	1 cut(s)	303
CviJI	RGCY	7 cut(s)	122, 130, 161, 268, 336, 424, 436
CviKI_1	RGCY	7 cut(s)	122, 130, 161, 268, 336, 424, 436
CviQI	GTAC	3 cut(s)	138, 247, 348
DdeI	CTNAG	3 cut(s)	114, 157, 432
DpnI	GATC	2 cut(s)	237, 317
DpnII	GATC	2 cut(s)	235, 315
DriI	GACNNNNNGTC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	334
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EciI	GGCGGA	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	197
FaeI	CATG	1 cut(s)	306
FaiI	YATR	4 cut(s)	55, 185, 201, 304
FatI	CATG	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	334
HaeIII	GGCC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	306
HinfI	GANTC	3 cut(s)	28, 208, 257
HphI	GGTGA	2 cut(s)	36, 335
Hpy166II	GTNNAC	3 cut(s)	44, 105, 382
Hpy188I	TCNGA	1 cut(s)	240
Hpy8I	GTNNAC	3 cut(s)	44, 105, 382
HpyAV	CCTTC	2 cut(s)	143, 314
HpyCH4III	ACNGT	2 cut(s)	86, 399
HpyCH4V	TGCA	3 cut(s)	264, 409, 416
HpyF3I	CTNAG	3 cut(s)	114, 157, 432
Hsp92II	CATG	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	235, 315
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	9 cut(s)	24, 101, 200, 243, 274, 284, 336, 355, 395
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	237, 317
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	2 cut(s)	235, 315
MboII	GAAGA	5 cut(s)	31, 145, 203, 253, 266
MlyI	GAGTC	2 cut(s)	217, 251
MnlI	CCTC	5 cut(s)	9, 57, 120, 217, 306
MseI	TTAA	1 cut(s)	309
NdeII	GATC	2 cut(s)	235, 315
NlaIII	CATG	1 cut(s)	306
NlaIV	GGNNCC	3 cut(s)	6, 131, 228
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	2 cut(s)	216, 251
PpsI	GAGTC	2 cut(s)	216, 251
PshAI	GACNNNNGTC	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	6, 131, 228
RsaI	GTAC	3 cut(s)	139, 248, 349
RsaNI	GTAC	3 cut(s)	138, 247, 348
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	2 cut(s)	235, 315
SchI	GAGTC	2 cut(s)	217, 251
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
SsiI	CCGC	3 cut(s)	77, 218, 333
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	86, 399
TaqI	TCGA	1 cut(s)	318
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
XceI	RCATGY	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.