Rh7DG374200

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005314
Physical Location & Seq
Forward (+)
50852621 .. 50854776
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG374200.1

Sequence Viewer

Length: 366 bp
ATGTATTTTGATAGCAATCTAAGTTCATCACAATGGTCATATGGATGGAGATTATGCAAATCCATCAACTTTGAAGTGGATGTTCAGCTCTTCGTCTTCAAATTAGTTTACCTTGAAGCCTACCCTAGTTATCAGGTGAAATTTGTTTTTGTTATCAGGGCGGACGATGAACCTGTTGATCAGAAGAAGTACCTTGAAGAGTCTTGCAAACCAAAATGTGTGAAACCATTTCTCCAGTATCAGGCATGTATTCAGAGGATCCAAGGTGATGAAAGCGGCCACAAGCATTGTACTGGACAATATTTTGATCACTGGTCTTGTGTGGACAAATGTGTTGCACCAAAGCTCTTTGAAAAACTGAAGTGA

Protein Analysis

121

Amino Acids

14.34

Weight (kDa)

7.54

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_hinge PF02320 60 - 121 2.2e-20 Ubiquinol-cytochrome C reductase hinge protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 161, 276
AclWI GGATC 2 cut(s) 253, 266
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 2 cut(s) 191, 292
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 5 cut(s) 74, 100, 116, 197, 353
AluBI AGCT 2 cut(s) 88, 346
AluI AGCT 2 cut(s) 88, 346
AlwI GGATC 2 cut(s) 253, 266
AoxI GGCC 1 cut(s) 277
ApoI RAATTY 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 148, 278
BamHI GGATCC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 88
BccI CCATC 2 cut(s) 39, 71
BclI TGATCA 2 cut(s) 178, 307
BfaI CTAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 3 cut(s) 235, 298, 317
Bse8I GATNNNNATC 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 2 cut(s) 50, 85
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 241
BseNI ACTGG 3 cut(s) 235, 298, 317
BshFI GGCC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 241
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 178, 258, 307
BspACI CCGC 2 cut(s) 161, 276
BspANI GGCC 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 260
BspPI GGATC 2 cut(s) 253, 266
BspQI GCTCTTC 1 cut(s) 95
BsrI ACTGG 3 cut(s) 235, 298, 317
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 3 cut(s) 178, 258, 307
BssT1I CCWWGG 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 95, 192
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 50, 85
BstKTI GATC 3 cut(s) 181, 261, 310
BstMBI GATC 3 cut(s) 178, 258, 307
BstNSI RCATGY 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 2 cut(s) 50, 85
BtsIMutI CAGTG 1 cut(s) 310
Csp6I GTAC 2 cut(s) 190, 291
CspCI CAANNNNNGTGG 2 cut(s) 269, 304
CviAII CATG 1 cut(s) 246
CviJI RGCY 4 cut(s) 88, 119, 279, 346
CviKI_1 RGCY 4 cut(s) 88, 119, 279, 346
CviQI GTAC 2 cut(s) 190, 291
DdeI CTNAG 1 cut(s) 20
DpnI GATC 3 cut(s) 180, 260, 309
DpnII GATC 3 cut(s) 178, 258, 307
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 95, 192
EarI CTCTTC 2 cut(s) 95, 192
EciI GGCGGA 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 1 cut(s) 249
FaiI YATR 4 cut(s) 40, 42, 55, 247
FatI CATG 1 cut(s) 245
FauNDI CATATG 1 cut(s) 40
FbaI TGATCA 2 cut(s) 178, 307
Fnu4HI GCNGC 1 cut(s) 277
FokI GGATG 2 cut(s) 57, 92
Fsp4HI GCNGC 1 cut(s) 277
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 1 cut(s) 249
HinfI GANTC 1 cut(s) 200
HphI GGTGA 2 cut(s) 148, 278
Hpy166II GTNNAC 2 cut(s) 109, 325
Hpy188I TCNGA 2 cut(s) 183, 255
Hpy8I GTNNAC 2 cut(s) 109, 325
HpyCH4V TGCA 3 cut(s) 57, 207, 338
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 1 cut(s) 249
Ksp22I TGATCA 2 cut(s) 178, 307
Kzo9I GATC 3 cut(s) 178, 258, 307
LguI GCTCTTC 1 cut(s) 95
LpnPI CCDG 7 cut(s) 119, 142, 186, 227, 248, 279, 298
MaeI CTAG 1 cut(s) 126
MalI GATC 3 cut(s) 180, 260, 309
MboI GATC 3 cut(s) 178, 258, 307
MboII GAAGA 4 cut(s) 82, 88, 196, 209
MflI RGATCY 1 cut(s) 258
MluCI AATT 2 cut(s) 101, 140
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 1 cut(s) 249
MslI CAYNNNNRTG 2 cut(s) 31, 43
NdeI CATATG 1 cut(s) 40
NdeII GATC 3 cut(s) 178, 258, 307
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 1 cut(s) 260
NspI RCATGY 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 278
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 258
RsaI GTAC 2 cut(s) 191, 292
RsaNI GTAC 2 cut(s) 190, 291
RseI CAYNNNNRTG 2 cut(s) 31, 43
SapI GCTCTTC 1 cut(s) 95
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 3 cut(s) 178, 258, 307
SchI GAGTC 1 cut(s) 209
SetI ASST 7 cut(s) 90, 114, 138, 175, 195, 268, 348
SmiMI CAYNNNNRTG 2 cut(s) 31, 43
Sse9I AATT 2 cut(s) 101, 140
SsiI CCGC 2 cut(s) 161, 276
SspI AATATT 1 cut(s) 302
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 262
TasI AATT 2 cut(s) 101, 140
TatI WGTACW 1 cut(s) 290
TauI GCSGC 1 cut(s) 279
TscAI CASTG 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 15, 183, 285
TspRI CASTG 1 cut(s) 317
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 249
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.