Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005314

Physical Location & Seq

Genomic Coordinates Forward (+)

3208759 .. 3217208

Gene Structure 8450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGCGGACGAGGATGTTGATCAAAAAAAGTATCTTGAGGATTCTTGTCAACCTAAATGCGTGAAGCCTTTAATTGAATATCAGGCGTGTGTGAAGAGGATTGAAGGTGATGACAGTGGTTACAAGCATTGTACAGGCCAATACTTTGACTACATATCTTGTGTCGACAAATGTGTCGCGCCAAAGTTATTTGGAAAGCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_hinge

Protein Analysis

69

Amino Acids

7.79

Weight (kDa)

5.7

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_hinge	PF02320	7 - 68	2e-21	Ubiquinol-cytochrome C reductase hinge protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15120 AT2G01090 AT2G01090 AT2G01090 AT2G01090
fragaria_vesca	FvH4_5g30500 FvH4_7g02900 FvH4_7g02900
malus_domestica	MD05G1023300.v1.1
prunus_persica	Prupe.1G560700_v2.0.a1 Prupe.8G028000_v2.0.a1 Prupe.8G028000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225181
rosa_laevigata	RLG00000001830
rosa_multiflora	Rmu_sc0002766.1_g000019
rosa_roxburghii	Rroxscaffold_3G00233930 Rroxscaffold_3G00234030
rosa_rugosa	Rorug01G0040300 Rorug07G0227900 Rorug07G0228400
rosa_samantha	Rh1BG048500 Rh1CG058800 Rh1DG062700 Rh7AG375600 Rh7CG394100 Rh7DG374200
rosa_wichuraiana	Rw1G004910 Rw7G031550 Rw7G031580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	77, 104
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
AoxI	GGCC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	119
BclI	TGATCA	1 cut(s)	19
BpuEI	CTTGAG	2 cut(s)	56, 185
BsaBI	GATNNNNATC	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	18
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	138
Bsp1407I	TGTACA	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	131
BssMI	GATC	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstUI	CGCG	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	121
CfoI	GCGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	132
CviJI	RGCY	3 cut(s)	67, 138, 199
CviKI_1	RGCY	3 cut(s)	67, 138, 199
CviQI	GTAC	1 cut(s)	132
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	20
FaiI	YATR	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	2 cut(s)	50, 166
HindII	GTYRAC	2 cut(s)	50, 166
HinfI	GANTC	1 cut(s)	41
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	50, 166
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	50, 166
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	116
HspAI	GCGC	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	2 cut(s)	68, 120
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	106
MluCI	AATT	1 cut(s)	72
MnlI	CCTC	3 cut(s)	4, 31, 90
MseI	TTAA	1 cut(s)	71
MvnI	CGCG	1 cut(s)	179
NdeII	GATC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	71
Sau3AI	GATC	1 cut(s)	19
SetI	ASST	3 cut(s)	55, 109, 201
SmlI	CTYRAG	2 cut(s)	35, 200
SmoI	CTYRAG	2 cut(s)	35, 200
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	72
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	121
TspRI	CASTG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.