Rorug07G0228400

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
20907833 .. 20908261
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0228400.1

Sequence Viewer

Length: 429 bp
ATGAGAGCTAGAGAAGAAATGAGAGCTAGTGTAGTCAACATGAGTGGACACTCCTCATCAGCAGCAGTTCTGTTAGCAATGATGGTGGTGACGATGACTTTGTTCATCACCAAAACTGATTGCTTCAGCATCAACCGGACAGTCACCGTCTCCTCAACTTGGTGCGATGGCCTCAACGACGACCTGTCGTGCCTAATTGGACAGACCGATTTGGATTCGGACGAGTTCATGCTGGACTCCGAATTCAGTAGAAGAATCTTGGCTGGTGGACCTATAACCTTCACTGGTGACACTGGAAATGGTGGAAAGGCTGTGTCGTGTGACCGAAAGGGGTTTCCTCCGTGCCACACTGACGTGGCAAACAAAAAACCCCCACCACCAAACTGCGACAAGGAGCCTACCCTTCGCGGTTGCTACCGCTATCCCTAA

Protein Analysis

142

Amino Acids

15.45

Weight (kDa)

5.62

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 408
AciI CCGC 2 cut(s) 408, 418
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 159
AhdI GACNNNNNGTC 1 cut(s) 184
AjiI CACGTC 1 cut(s) 355
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 2 cut(s) 8, 26
AluI AGCT 2 cut(s) 8, 26
Alw26I GTCTC 1 cut(s) 154
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 4 cut(s) 100, 100, 136, 299
AvaII GGWCC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 74
BccI CCATC 2 cut(s) 76, 161
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 2 cut(s) 9, 27
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 269
BmeRI GACNNNNNGTC 1 cut(s) 184
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 396
BmsI GCATC 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 289, 298
Bse3DI GCAATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 289, 298
BseRI GAGGAG 2 cut(s) 43, 142
BseXI GCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 1 cut(s) 171
BspACI CCGC 2 cut(s) 408, 418
BspANI GGCC 1 cut(s) 171
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 2 cut(s) 289, 298
Bst4CI ACNGT 2 cut(s) 142, 148
BstFNI CGCG 1 cut(s) 408
BstMAI GTCTC 1 cut(s) 154
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 355
BtsIMutI CAGTG 3 cut(s) 282, 291, 348
Cfr13I GGNCC 1 cut(s) 269
CspCI CAANNNNNGTGG 4 cut(s) 25, 60, 66, 101
CviAII CATG 2 cut(s) 40, 229
CviJI RGCY 6 cut(s) 8, 26, 171, 263, 311, 397
CviKI_1 RGCY 6 cut(s) 8, 26, 171, 263, 311, 397
DriI GACNNNNNGTC 1 cut(s) 184
Eam1105I GACNNNNNGTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 242
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 2 cut(s) 43, 232
FaiI YATR 3 cut(s) 41, 230, 275
FatI CATG 2 cut(s) 39, 228
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 9, 27
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 136
Hin1II CATG 2 cut(s) 43, 232
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 3 cut(s) 215, 236, 255
HpaII CCGG 1 cut(s) 136
HphI GGTGA 4 cut(s) 100, 100, 136, 299
Hpy166II GTNNAC 3 cut(s) 37, 47, 269
Hpy188I TCNGA 2 cut(s) 220, 241
Hpy8I GTNNAC 3 cut(s) 37, 47, 269
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 289, 413
HpyCH4III ACNGT 2 cut(s) 142, 148
HpyCH4IV ACGT 1 cut(s) 354
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 2 cut(s) 43, 232
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 6 cut(s) 149, 197, 218, 249, 270, 279
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 138
MaeI CTAG 2 cut(s) 9, 27
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 4 cut(s) 88, 142, 287, 320
MboII GAAGA 2 cut(s) 26, 264
MluCI AATT 2 cut(s) 195, 242
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 4 cut(s) 64, 163, 182, 348
MslI CAYNNNNRTG 1 cut(s) 353
MspI CCGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 408
NlaIII CATG 2 cut(s) 43, 232
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 4 cut(s) 88, 142, 287, 320
OliI CACNNNNGTG 1 cut(s) 353
PfeI GAWTC 2 cut(s) 215, 255
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 230
SetI ASST 6 cut(s) 10, 28, 186, 274, 281, 357
SfaNI GCATC 1 cut(s) 138
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 353
Sse9I AATT 2 cut(s) 195, 242
SsiI CCGC 2 cut(s) 408, 418
SspMI CTAG 2 cut(s) 9, 27
TaaI ACNGT 2 cut(s) 142, 148
TaiI ACGT 1 cut(s) 357
TaqII GACCGA 2 cut(s) 221, 339
TasI AATT 2 cut(s) 195, 242
TfiI GAWTC 2 cut(s) 215, 255
TscAI CASTG 3 cut(s) 289, 298, 355
TseFI GTSAC 4 cut(s) 88, 142, 287, 320
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 4 cut(s) 88, 142, 287, 320
TspDTI ATGAA 2 cut(s) 94, 217
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 3 cut(s) 289, 298, 355
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 242
XspI CTAG 2 cut(s) 9, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.