Rw7G031550

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005314
Physical Location & Seq
Forward (+)
45311907 .. 45319526
7620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031550.1

Sequence Viewer

Length: 405 bp
ATGCACTACGTACTCATAACAAAAATGGCCCGTCTTGTTGTATTAGAGGTTAGATTGTCCGCTCTACTGTTTTCTTTGCCCAAGTCCACGATTTCTCAGGTAGCTTGGAGGCTCCTTCGTACCGAGTTTTGTGTCTTCTCAGCTTCTATCGGTATCTTTGCTAATATACTCCAAATAGAGTATAACTTGAGTATTCAGGCGGATGAGGAACCTGTTGATCAGAAGAAGTACCTTGAAGACTCCTGCAAGCCGAAATGTGTCAAACCATTTCTCCAATATCAGGCATGTGTGAAGAGGATCGAAGGTGACGAAAGCGGCCACAAGCATTGTACTGGACAATATTTTGACTACTGGTCTTGTGTAGACAAATGTGTTGCACCAAAGCTCTTTACTAAGCTGAAGTGA

Protein Analysis

134

Amino Acids

15.44

Weight (kDa)

8.66

Isoelectric Point (pI)

57.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_hinge PF02320 73 - 134 1.2e-21 Ubiquinol-cytochrome C reductase hinge protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 363
AciI CCGC 3 cut(s) 60, 200, 315
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 316
AfaI GTAC 4 cut(s) 12, 121, 230, 331
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 1 cut(s) 236
AhdI GACNNNNNGTC 1 cut(s) 352
AluBI AGCT 4 cut(s) 104, 143, 385, 397
AluI AGCT 4 cut(s) 104, 143, 385, 397
AlwI GGATC 1 cut(s) 305
AoxI GGCC 2 cut(s) 27, 316
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 317
BbsI GAAGAC 2 cut(s) 127, 243
BclI TGATCA 1 cut(s) 217
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
BmeRI GACNNNNNGTC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 113, 210
BpiI GAAGAC 2 cut(s) 127, 243
BpuEI CTTGAG 1 cut(s) 208
BsaAI YACGTR 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 337, 356
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 110, 153
BseNI ACTGG 2 cut(s) 337, 356
BshFI GGCC 2 cut(s) 29, 318
BslI CCNNNNNNNGG 1 cut(s) 280
BsnI GGCC 2 cut(s) 29, 318
Bsp143I GATC 2 cut(s) 217, 297
BspACI CCGC 3 cut(s) 60, 200, 315
BspANI GGCC 2 cut(s) 29, 318
BspCNI CTCAG 2 cut(s) 109, 152
BspLI GGNNCC 2 cut(s) 113, 210
BspPI GGATC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 2 cut(s) 337, 356
BssMI GATC 2 cut(s) 217, 297
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 3 cut(s) 96, 139, 393
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 2 cut(s) 220, 300
BstMBI GATC 2 cut(s) 217, 297
BstNSI RCATGY 1 cut(s) 288
BstSNI TACGTA 1 cut(s) 10
BstV2I GAAGAC 2 cut(s) 127, 243
BsuRI GGCC 2 cut(s) 29, 318
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 4 cut(s) 11, 120, 229, 330
CspCI CAANNNNNGTGG 2 cut(s) 308, 343
CviAII CATG 1 cut(s) 285
CviJI RGCY 8 cut(s) 29, 104, 112, 143, 250, 318, 385, 397
CviKI_1 RGCY 8 cut(s) 29, 104, 112, 143, 250, 318, 385, 397
CviQI GTAC 4 cut(s) 11, 120, 229, 330
DdeI CTNAG 3 cut(s) 96, 139, 393
DpnI GATC 2 cut(s) 219, 299
DpnII GATC 2 cut(s) 217, 297
DriI GACNNNNNGTC 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 287
Eam1105I GACNNNNNGTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 215
Eco105I TACGTA 1 cut(s) 10
FaeI CATG 1 cut(s) 288
FaiI YATR 4 cut(s) 17, 167, 183, 286
FatI CATG 1 cut(s) 284
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 316
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 316
GluI GCNGC 1 cut(s) 316
HaeIII GGCC 2 cut(s) 29, 318
Hin1II CATG 1 cut(s) 288
HinfI GANTC 1 cut(s) 239
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 87, 364
Hpy188I TCNGA 1 cut(s) 222
Hpy8I GTNNAC 2 cut(s) 87, 364
HpyAV CCTTC 2 cut(s) 125, 296
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 4, 246, 377
HpyF3I CTNAG 3 cut(s) 96, 139, 393
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 217, 297
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 7 cut(s) 83, 182, 225, 256, 266, 318, 337
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 219, 299
MbiI CCGCTC 1 cut(s) 62
MboI GATC 2 cut(s) 217, 297
MboII GAAGA 4 cut(s) 127, 235, 248, 304
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 4 cut(s) 40, 102, 199, 288
NdeII GATC 2 cut(s) 217, 297
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 2 cut(s) 113, 210
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PkrI GCNGC 1 cut(s) 317
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 113, 210
PspPI GGNCC 1 cut(s) 28
RsaI GTAC 4 cut(s) 12, 121, 230, 331
RsaNI GTAC 4 cut(s) 11, 120, 229, 330
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 2 cut(s) 217, 297
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
SnaBI TACGTA 1 cut(s) 10
SsiI CCGC 3 cut(s) 60, 200, 315
SspI AATATT 1 cut(s) 341
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 300
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 318
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
XceI RCATGY 1 cut(s) 288
XmiI GTMKAC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.