Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002766.1

Orthogroup ID

OG0005314

Physical Location & Seq

Genomic Coordinates Forward (+)

77783 .. 81971

Gene Structure 4189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002766.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ctgttttctttgcccaagtccgcgatttctcagcttctatcggtatctttgttaatggcggacgaggaacctgttgatcagaagaagtaccttgaagactcctgcaagccgaaatgtgtcaaaccatttctccaatatcaggcatgtgttaagaggatcgaaggtgacgaaagcggccacaagcattgtactggacaatattttgactactggtcttgtgtagacaaatgtgttgcaccaaagctctttactaagctgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_hinge

Protein Analysis

87

Amino Acids

9.93

Weight (kDa)

8.24

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15120 AT2G01090 AT2G01090 AT2G01090 AT2G01090
fragaria_vesca	FvH4_5g30500 FvH4_7g02900 FvH4_7g02900
malus_domestica	MD05G1023300.v1.1
prunus_persica	Prupe.1G560700_v2.0.a1 Prupe.8G028000_v2.0.a1 Prupe.8G028000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225181
rosa_laevigata	RLG00000001830
rosa_multiflora	Rmu_sc0002766.1_g000019
rosa_roxburghii	Rroxscaffold_3G00233930 Rroxscaffold_3G00234030
rosa_rugosa	Rorug01G0040300 Rorug07G0227900 Rorug07G0228400
rosa_samantha	Rh1BG048500 Rh1CG058800 Rh1DG062700 Rh7AG375600 Rh7CG394100 Rh7DG374200
rosa_wichuraiana	Rw1G004910 Rw7G031550 Rw7G031580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	23
AciI	CCGC	3 cut(s)	21, 59, 174
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	175
AfaI	GTAC	2 cut(s)	89, 190
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	95
AhdI	GACNNNNNGTC	1 cut(s)	211
AluBI	AGCT	3 cut(s)	34, 244, 256
AluI	AGCT	3 cut(s)	34, 244, 256
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	76
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	196, 215
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	196, 215
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	139
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	76, 156
BspACI	CCGC	3 cut(s)	21, 59, 174
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	196, 215
BssMI	GATC	2 cut(s)	76, 156
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	30, 252
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	79, 159
BstMBI	GATC	2 cut(s)	76, 156
BstNSI	RCATGY	1 cut(s)	147
BstUI	CGCG	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	88, 189
CspCI	CAANNNNNGTGG	2 cut(s)	167, 202
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	5 cut(s)	34, 109, 177, 244, 256
CviKI_1	RGCY	5 cut(s)	34, 109, 177, 244, 256
CviQI	GTAC	2 cut(s)	88, 189
DdeI	CTNAG	2 cut(s)	30, 252
DpnI	GATC	2 cut(s)	78, 158
DpnII	GATC	2 cut(s)	76, 156
DriI	GACNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	175
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EciI	GGCGGA	1 cut(s)	74
FaeI	CATG	1 cut(s)	147
FaiI	YATR	1 cut(s)	145
FatI	CATG	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	147
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	105, 236
HpyF3I	CTNAG	2 cut(s)	30, 252
Hsp92II	CATG	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	76, 156
LpnPI	CCDG	5 cut(s)	84, 115, 125, 177, 196
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	78, 158
MboI	GATC	2 cut(s)	76, 156
MboII	GAAGA	2 cut(s)	94, 107
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	2 cut(s)	58, 147
MseI	TTAA	2 cut(s)	53, 150
MvnI	CGCG	1 cut(s)	23
NdeII	GATC	2 cut(s)	76, 156
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	69
RsaI	GTAC	2 cut(s)	89, 190
RsaNI	GTAC	2 cut(s)	88, 189
SaqAI	TTAA	2 cut(s)	53, 150
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	76, 156
SchI	GAGTC	1 cut(s)	92
SetI	ASST	6 cut(s)	36, 73, 93, 166, 246, 258
SsiI	CCGC	3 cut(s)	21, 59, 174
SspI	AATATT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	159
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	53, 150
Tru9I	TTAA	2 cut(s)	53, 150
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
XceI	RCATGY	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.