Rroxscaffold_3G00234030

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005314
Physical Location & Seq
Reverse (-)
20334229 .. 20338631
4403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234030.1

Sequence Viewer

Length: 210 bp
ATGGCGGACGAGGAACCTGTTGATCAGAAGAAGTACCTTGAAGACTCCTGCAAGCCAAAATGTGTCAAACCATTTCTCCAATATCAGGCATGTGTTAAGAGGATCGAAGGTGACGAAAGCGGCCACAAGCATTGTACTGGACAATATTTTGACTACTGGTCTTGTGTAGACAAATGTGTTGCACCAAAGCTCTTTACTAAGCTGAAGTGA

Protein Analysis

69

Amino Acids

8.04

Weight (kDa)

7.57

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_hinge PF02320 8 - 69 1.7e-22 Ubiquinol-cytochrome C reductase hinge protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AciI CCGC 2 cut(s) 5, 120
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 121
AfaI GTAC 2 cut(s) 35, 136
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 1 cut(s) 41
AhdI GACNNNNNGTC 1 cut(s) 157
AluBI AGCT 2 cut(s) 190, 202
AluI AGCT 2 cut(s) 190, 202
AlwI GGATC 1 cut(s) 110
AoxI GGCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 48
BclI TGATCA 1 cut(s) 22
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BmeRI GACNNNNNGTC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 142, 161
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 142, 161
BshFI GGCC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 22, 102
BspACI CCGC 2 cut(s) 5, 120
BspANI GGCC 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 110
BsrI ACTGG 2 cut(s) 142, 161
BssMI GATC 2 cut(s) 22, 102
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 198
BstKTI GATC 2 cut(s) 25, 105
BstMBI GATC 2 cut(s) 22, 102
BstNSI RCATGY 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 34, 135
CspCI CAANNNNNGTGG 2 cut(s) 113, 148
CviAII CATG 1 cut(s) 90
CviJI RGCY 4 cut(s) 55, 123, 190, 202
CviKI_1 RGCY 4 cut(s) 55, 123, 190, 202
CviQI GTAC 2 cut(s) 34, 135
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 24, 104
DpnII GATC 2 cut(s) 22, 102
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 121
Eam1105I GACNNNNNGTC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 20
FaeI CATG 1 cut(s) 93
FaiI YATR 1 cut(s) 91
FatI CATG 1 cut(s) 89
FbaI TGATCA 1 cut(s) 22
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 1 cut(s) 93
HinfI GANTC 1 cut(s) 44
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 27
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 51, 182
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 22, 102
LpnPI CCDG 5 cut(s) 30, 61, 71, 123, 142
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 24, 104
MboI GATC 2 cut(s) 22, 102
MboII GAAGA 2 cut(s) 40, 53
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 2 cut(s) 4, 93
MseI TTAA 1 cut(s) 96
NdeII GATC 2 cut(s) 22, 102
NlaIII CATG 1 cut(s) 93
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 15
RsaI GTAC 2 cut(s) 35, 136
RsaNI GTAC 2 cut(s) 34, 135
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 22, 102
SchI GAGTC 1 cut(s) 38
SetI ASST 5 cut(s) 19, 39, 112, 192, 204
SsiI CCGC 2 cut(s) 5, 120
SspI AATATT 1 cut(s) 146
TaqI TCGA 1 cut(s) 105
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
XceI RCATGY 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.