Rw7G031580

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005314
Physical Location & Seq
Forward (+)
45362091 .. 45367538
5448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031580.1

Sequence Viewer

Length: 354 bp
ATGAGTGGATCAATAAGGTTCTATTGTGCTAGGGTTTCTGATAGGAAGATGAGAAGAAGGAAGACCTGTTTTATAGAACAGAAATTGGAAAAGTGGTTTGGAGGCTCCTTCGTGCTGAGTTTTGTGACTTCTCTACTTCTCCTTTGGGCGGACGACGAACCTGTTGATCAGAAGAAGTACCTTGAAGAGTCTTGCAAGCCAAAATGTGTGAAACCATTTCTCCAGTATCAGGCATGTATTCAGAGGATCCAAGGTGATGAAAGCGGCCACAAGCATTGTACTGGACAATATTTTGATCACTGGTCTTGTGTGGACAAATGTGTTGCACCAAAGCTCTTTGAAAAACTGAAGTGA

Protein Analysis

117

Amino Acids

13.78

Weight (kDa)

9.04

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_hinge PF02320 56 - 117 2e-20 Ubiquinol-cytochrome C reductase hinge protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 149, 264
AclWI GGATC 3 cut(s) 16, 241, 254
AcoI YGGCCR 1 cut(s) 265
AfaI GTAC 2 cut(s) 179, 280
AfiI CCNNNNNNNGG 2 cut(s) 148, 229
AgsI TTSAA 2 cut(s) 185, 341
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
AlwI GGATC 3 cut(s) 16, 241, 254
AoxI GGCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 68
BclI TGATCA 2 cut(s) 166, 295
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
BmiI GGNNCC 2 cut(s) 106, 248
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 229
Bse1I ACTGG 3 cut(s) 223, 286, 305
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 148, 229
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 3 cut(s) 223, 286, 305
BshFI GGCC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 148, 229
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 4 cut(s) 8, 166, 246, 295
BspACI CCGC 2 cut(s) 149, 264
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 106, 248
BspPI GGATC 3 cut(s) 16, 241, 254
BsrI ACTGG 3 cut(s) 223, 286, 305
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 4 cut(s) 8, 166, 246, 295
BssT1I CCWWGG 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 1 cut(s) 116
BstKTI GATC 4 cut(s) 11, 169, 249, 298
BstMBI GATC 4 cut(s) 8, 166, 246, 295
BstNSI RCATGY 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
BsuRI GGCC 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 178, 279
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 1 cut(s) 234
CviJI RGCY 4 cut(s) 105, 199, 267, 334
CviKI_1 RGCY 4 cut(s) 105, 199, 267, 334
CviQI GTAC 2 cut(s) 178, 279
DdeI CTNAG 1 cut(s) 116
DpnI GATC 4 cut(s) 10, 168, 248, 297
DpnII GATC 4 cut(s) 8, 166, 246, 295
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 237
FaiI YATR 2 cut(s) 74, 235
FatI CATG 1 cut(s) 233
FbaI TGATCA 2 cut(s) 166, 295
Fnu4HI GCNGC 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 265
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 267
Hin1II CATG 1 cut(s) 237
HinfI GANTC 1 cut(s) 188
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 3 cut(s) 40, 171, 243
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 51, 118
HpyCH4V TGCA 2 cut(s) 195, 326
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 1 cut(s) 237
Ksp22I TGATCA 2 cut(s) 166, 295
Kzo9I GATC 4 cut(s) 8, 166, 246, 295
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 6 cut(s) 79, 174, 215, 236, 267, 286
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 124
MalI GATC 4 cut(s) 10, 168, 248, 297
MboI GATC 4 cut(s) 8, 166, 246, 295
MboII GAAGA 5 cut(s) 58, 66, 73, 184, 197
MflI RGATCY 1 cut(s) 246
MluCI AATT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 2 cut(s) 95, 237
NdeII GATC 4 cut(s) 8, 166, 246, 295
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 2 cut(s) 106, 248
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 237
PkrI GCNGC 1 cut(s) 266
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 106, 248
PsuI RGATCY 1 cut(s) 246
RsaI GTAC 2 cut(s) 179, 280
RsaNI GTAC 2 cut(s) 178, 279
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 4 cut(s) 8, 166, 246, 295
SchI GAGTC 1 cut(s) 197
SetI ASST 6 cut(s) 20, 68, 163, 183, 256, 336
Sse9I AATT 1 cut(s) 83
SsiI CCGC 2 cut(s) 149, 264
SspI AATATT 1 cut(s) 290
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 250
TasI AATT 1 cut(s) 83
TatI WGTACW 1 cut(s) 278
TauI GCSGC 1 cut(s) 267
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 1 cut(s) 305
XceI RCATGY 1 cut(s) 237
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.