Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005314

Physical Location & Seq

Genomic Coordinates Reverse (-)

20263918 .. 20267504

Gene Structure 3587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCGGACGATGAACCTGTTGATCCGAAGAAGTACCTTGAAGAGTCTTGCAAACCAAAATGTGTGAAACCATTTCTCCAGTATCAGGCATGTATTCAGAGGATCCAAGGTGATGAAAGCGGCCACAAGCATTGTACTGGACAATATTTTGATCACTGGTCTTGTGTGGACAAATGTGTTGCACCAAAGCTCTTTGAAAAACTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_hinge

Protein Analysis

69

Amino Acids

8.02

Weight (kDa)

6.8

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_hinge	PF02320	8 - 69	8e-22	Ubiquinol-cytochrome C reductase hinge protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15120 AT2G01090 AT2G01090 AT2G01090 AT2G01090
fragaria_vesca	FvH4_5g30500 FvH4_7g02900 FvH4_7g02900
malus_domestica	MD05G1023300.v1.1
prunus_persica	Prupe.1G560700_v2.0.a1 Prupe.8G028000_v2.0.a1 Prupe.8G028000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225181
rosa_laevigata	RLG00000001830
rosa_multiflora	Rmu_sc0002766.1_g000019
rosa_roxburghii	Rroxscaffold_3G00233930 Rroxscaffold_3G00234030
rosa_rugosa	Rorug01G0040300 Rorug07G0227900 Rorug07G0228400
rosa_samantha	Rh1BG048500 Rh1CG058800 Rh1DG062700 Rh7AG375600 Rh7CG394100 Rh7DG374200
rosa_wichuraiana	Rw1G004910 Rw7G031550 Rw7G031580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 120
AclWI	GGATC	3 cut(s)	17, 97, 110
AcoI	YGGCCR	1 cut(s)	121
AfaI	GTAC	2 cut(s)	35, 136
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	41, 197
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
AlwI	GGATC	3 cut(s)	17, 97, 110
AoxI	GGCC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	151
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	3 cut(s)	79, 142, 161
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseNI	ACTGG	3 cut(s)	79, 142, 161
BshFI	GGCC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	22, 102, 151
BspACI	CCGC	2 cut(s)	5, 120
BspANI	GGCC	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	3 cut(s)	17, 97, 110
BsrI	ACTGG	3 cut(s)	79, 142, 161
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	3 cut(s)	22, 102, 151
BssT1I	CCWWGG	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	36
BstKTI	GATC	3 cut(s)	25, 105, 154
BstMBI	GATC	3 cut(s)	22, 102, 151
BstNSI	RCATGY	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	34, 135
CspCI	CAANNNNNGTGG	2 cut(s)	113, 148
CviAII	CATG	1 cut(s)	90
CviJI	RGCY	2 cut(s)	123, 190
CviKI_1	RGCY	2 cut(s)	123, 190
CviQI	GTAC	2 cut(s)	34, 135
DpnI	GATC	3 cut(s)	24, 104, 153
DpnII	GATC	3 cut(s)	22, 102, 151
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	93
FaiI	YATR	1 cut(s)	91
FatI	CATG	1 cut(s)	89
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	93
HinfI	GANTC	1 cut(s)	44
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	27, 99
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	51, 182
Hsp92II	CATG	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	22, 102, 151
LpnPI	CCDG	5 cut(s)	30, 71, 92, 123, 142
MalI	GATC	3 cut(s)	24, 104, 153
MboI	GATC	3 cut(s)	22, 102, 151
MboII	GAAGA	2 cut(s)	40, 53
MflI	RGATCY	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	1 cut(s)	93
NdeII	GATC	3 cut(s)	22, 102, 151
NlaIII	CATG	1 cut(s)	93
NlaIV	GGNNCC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	2 cut(s)	35, 136
RsaNI	GTAC	2 cut(s)	34, 135
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	3 cut(s)	22, 102, 151
SchI	GAGTC	1 cut(s)	53
SetI	ASST	4 cut(s)	19, 39, 112, 192
SsiI	CCGC	2 cut(s)	5, 120
SspI	AATATT	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	106
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	123
TscAI	CASTG	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	27, 129
TspRI	CASTG	1 cut(s)	161
XceI	RCATGY	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.