Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005314

Physical Location & Seq

Genomic Coordinates Reverse (-)

45781290 .. 45782238

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G560700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTCAGTTCTGAATGTTCACAGTACTGGATCCTTCCATTAATAGTTGGCACTGGTAGTTCAGTTTCTTGCTCTAGCGATATTACAATAATGTATTCTCCAACGCCTGTGTGTAAAACCTATGATATCGTCGATGTTGGGCTGTTTGTCTTTTGTATGGCGGACGAGGAACCTGTTGATCAAAAGAAGTACCTTGAAGAGTCTTGCAAGCCAAAGTGTGTCAAACCACTACTCGAGTATCAGGCATGTGTTAAGAGAATCCAAGGTGATGAAAGCGGGCACAAGCATTGTACTGGGCAATATTTCGACTACTGGTCTTGTGTTGACAAATGCGTTGCACCAAAGCTTTTCCCAAAACTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_hinge

Protein Analysis

122

Amino Acids

13.64

Weight (kDa)

5.62

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15120 AT2G01090 AT2G01090 AT2G01090 AT2G01090
fragaria_vesca	FvH4_5g30500 FvH4_7g02900 FvH4_7g02900
malus_domestica	MD05G1023300.v1.1
prunus_persica	Prupe.1G560700_v2.0.a1 Prupe.8G028000_v2.0.a1 Prupe.8G028000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225181
rosa_laevigata	RLG00000001830
rosa_multiflora	Rmu_sc0002766.1_g000019
rosa_roxburghii	Rroxscaffold_3G00233930 Rroxscaffold_3G00234030
rosa_rugosa	Rorug01G0040300 Rorug07G0227900 Rorug07G0228400
rosa_samantha	Rh1BG048500 Rh1CG058800 Rh1DG062700 Rh7AG375600 Rh7CG394100 Rh7DG374200
rosa_wichuraiana	Rw1G004910 Rw7G031550 Rw7G031580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	161, 276
AclWI	GGATC	2 cut(s)	25, 38
AfaI	GTAC	3 cut(s)	26, 191, 292
AgsI	TTSAA	1 cut(s)	197
AhdI	GACNNNNNGTC	1 cut(s)	313
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
AlwI	GGATC	2 cut(s)	25, 38
Ama87I	CYCGRG	1 cut(s)	233
AseI	ATTAAT	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	282
BaeI	ACNNNNGTAYC	2 cut(s)	221, 254
BamHI	GGATCC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	1 cut(s)	75
BmcAI	AGTACT	1 cut(s)	26
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	32, 171
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	262
Bse1I	ACTGG	4 cut(s)	32, 58, 298, 317
BseDI	CCNNGG	1 cut(s)	262
BseNI	ACTGG	4 cut(s)	32, 58, 298, 317
BseSI	GKGCMC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	30, 178
BspACI	CCGC	2 cut(s)	161, 276
BspLI	GGNNCC	2 cut(s)	32, 171
BspPI	GGATC	2 cut(s)	25, 38
BsrI	ACTGG	4 cut(s)	32, 58, 298, 317
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	30, 178
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	209, 278
BstKTI	GATC	2 cut(s)	33, 181
BstMBI	GATC	2 cut(s)	30, 178
BstNSI	RCATGY	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	209, 278
Csp6I	GTAC	3 cut(s)	25, 190, 291
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	3 cut(s)	142, 211, 346
CviKI_1	RGCY	3 cut(s)	142, 211, 346
CviQI	GTAC	3 cut(s)	25, 190, 291
DpnI	GATC	2 cut(s)	32, 180
DpnII	GATC	2 cut(s)	30, 178
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	192
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	249
FaiI	YATR	3 cut(s)	123, 158, 247
FatI	CATG	1 cut(s)	245
FauI	CCCGC	1 cut(s)	269
FbaI	TGATCA	1 cut(s)	178
FspBI	CTAG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	2 cut(s)	200, 258
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	20, 325
Hpy188I	TCNGA	1 cut(s)	13
Hpy8I	GTNNAC	2 cut(s)	20, 325
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	207, 338
Hsp92II	CATG	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	30, 178
LpnPI	CCDG	7 cut(s)	13, 39, 120, 186, 227, 279, 298
MaeI	CTAG	1 cut(s)	75
MalI	GATC	2 cut(s)	32, 180
MboI	GATC	2 cut(s)	30, 178
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	1 cut(s)	160
MseI	TTAA	2 cut(s)	41, 252
NdeII	GATC	2 cut(s)	30, 178
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	2 cut(s)	32, 171
NspI	RCATGY	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	32, 171
PspXI	VCTCGAGB	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	3 cut(s)	26, 191, 292
RsaNI	GTAC	3 cut(s)	25, 190, 291
SaqAI	TTAA	2 cut(s)	41, 252
Sau3AI	GATC	2 cut(s)	30, 178
ScaI	AGTACT	1 cut(s)	26
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	5 cut(s)	122, 175, 195, 268, 348
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	2 cut(s)	161, 276
SspI	AATATT	1 cut(s)	302
SspMI	CTAG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	132, 234, 306
TatI	WGTACW	2 cut(s)	24, 290
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	41, 252
Tru9I	TTAA	2 cut(s)	41, 252
TscAI	CASTG	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	58
VspI	ATTAAT	1 cut(s)	41
XceI	RCATGY	1 cut(s)	249
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	1 cut(s)	75
ZrmI	AGTACT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.