RLG00000001830

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005314
Physical Location & Seq
Reverse (-)
21411242 .. 21413266
2025 bp
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UTR
Exon/CDS
Intron
RLM00000001830

Sequence Viewer

Length: 318 bp
ATGGATGGAGATTATGCAAATCCATATAGTAACTTTGAAATGGATGTTCAGCTCTTCGTCTTTAAATTAGTTTACCTTAGTTATCAGGTGAAATTTGTTCTTGTTATCAGGGCGGACGACGAACCTGTTGATCAGAAGAAGTACCTTGAAGAGTCTTGCAAGCCAAAATGTGTGAAACCATTTCTCCAGTATCAGGCATGTATTCAGAGGATCCAAGGTGATGAAAGCGGCCACAAGCATTGTACTGGACAATATTTTGATCACTGGTCTTGTGTGGACAAATGTGTTGCGCCAAAGCTCTTTGAAAAACTGAAGTGA

Protein Analysis

106

Amino Acids

12.35

Weight (kDa)

6.27

Isoelectric Point (pI)

27.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_hinge PF02320 44 - 105 1.5e-20 Ubiquinol-cytochrome C reductase hinge protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 113, 228
AclWI GGATC 2 cut(s) 205, 218
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 2 cut(s) 143, 244
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 3 cut(s) 38, 149, 305
AluBI AGCT 2 cut(s) 52, 298
AluI AGCT 2 cut(s) 52, 298
AlwI GGATC 2 cut(s) 205, 218
AoxI GGCC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 100, 230
BamHI GGATCC 1 cut(s) 210
BclI TGATCA 2 cut(s) 130, 259
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 187, 250, 269
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 2 cut(s) 10, 49
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 3 cut(s) 187, 250, 269
BshFI GGCC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 193
BsnI GGCC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 130, 210, 259
BspACI CCGC 2 cut(s) 113, 228
BspANI GGCC 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 212
BspPI GGATC 2 cut(s) 205, 218
BspQI GCTCTTC 1 cut(s) 59
BsrI ACTGG 3 cut(s) 187, 250, 269
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 130, 210, 259
BssT1I CCWWGG 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 59, 144
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 10, 49
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 133, 213, 262
BstMBI GATC 3 cut(s) 130, 210, 259
BstNSI RCATGY 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 2 cut(s) 10, 49
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 161
CfoI GCGC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 142, 243
CspCI CAANNNNNGTGG 2 cut(s) 221, 256
CviAII CATG 1 cut(s) 198
CviJI RGCY 4 cut(s) 52, 163, 231, 298
CviKI_1 RGCY 4 cut(s) 52, 163, 231, 298
CviQI GTAC 2 cut(s) 142, 243
DdeI CTNAG 1 cut(s) 77
DpnI GATC 3 cut(s) 132, 212, 261
DpnII GATC 3 cut(s) 130, 210, 259
DraI TTTAAA 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 59, 144
EarI CTCTTC 2 cut(s) 59, 144
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 1 cut(s) 201
FaiI YATR 4 cut(s) 15, 25, 27, 199
FatI CATG 1 cut(s) 197
FbaI TGATCA 2 cut(s) 130, 259
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 2 cut(s) 17, 56
Fsp4HI GCNGC 1 cut(s) 229
GlaI GCGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 231
HhaI GCGC 1 cut(s) 292
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 1 cut(s) 152
HphI GGTGA 2 cut(s) 100, 230
Hpy166II GTNNAC 2 cut(s) 73, 277
Hpy188I TCNGA 2 cut(s) 135, 207
Hpy8I GTNNAC 2 cut(s) 73, 277
Hpy99I CGWCG 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 17, 159
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 1 cut(s) 290
Ksp22I TGATCA 2 cut(s) 130, 259
Kzo9I GATC 3 cut(s) 130, 210, 259
LguI GCTCTTC 1 cut(s) 59
LpnPI CCDG 7 cut(s) 71, 94, 138, 179, 200, 231, 250
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 132, 212, 261
MboI GATC 3 cut(s) 130, 210, 259
MboII GAAGA 3 cut(s) 46, 148, 161
MflI RGATCY 1 cut(s) 210
MluCI AATT 2 cut(s) 65, 92
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 1 cut(s) 201
MseI TTAA 1 cut(s) 63
NdeII GATC 3 cut(s) 130, 210, 259
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 212
NspI RCATGY 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 230
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 210
RsaI GTAC 2 cut(s) 143, 244
RsaNI GTAC 2 cut(s) 142, 243
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 3 cut(s) 130, 210, 259
SchI GAGTC 1 cut(s) 161
SetI ASST 7 cut(s) 54, 78, 90, 127, 147, 220, 300
Sse9I AATT 2 cut(s) 65, 92
SsiI CCGC 2 cut(s) 113, 228
SspI AATATT 1 cut(s) 254
StyI CCWWGG 1 cut(s) 214
TasI AATT 2 cut(s) 65, 92
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 269
XapI RAATTY 1 cut(s) 92
XceI RCATGY 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.