Rw1G004910

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005314
Physical Location & Seq
Forward (+)
9392328 .. 9398568
6241 bp
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UTR
Exon/CDS
Intron
Rw1G004910.1

Sequence Viewer

Length: 216 bp
ATGTTAAGGGCGGACGAGGAGATTGCTGATCCAAAAAAGTATCTGGAGGATTCTTGTCAACCTAAATGTGTGAAGCCTTTAATTGAATATCAGGCATGTGTCAAGAGGATTGAAGGTGATGATAGTGGTTACAAGCATTGTACTGGCCAGTACTTTGACTACATATCTTGTGTTGACAAATGTGTCGCGCCAAAGTTATTTGGAAAGCTCAAGTAA

Protein Analysis

71

Amino Acids

8.12

Weight (kDa)

6.54

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_hinge PF02320 10 - 71 6.2e-22 Ubiquinol-cytochrome C reductase hinge protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 145
AfaI GTAC 2 cut(s) 142, 152
AgsI TTSAA 2 cut(s) 86, 113
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 128
BalI TGGCCA 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BmcAI AGTACT 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 148, 148
BseNI ACTGG 2 cut(s) 148, 148
BseRI GAGGAG 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 147
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 147
BspFNI CGCG 1 cut(s) 188
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 2 cut(s) 148, 148
BssMI GATC 1 cut(s) 28
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 99
BstUI CGCG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 147
CfoI GCGC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 141, 151
CviAII CATG 1 cut(s) 96
CviJI RGCY 3 cut(s) 76, 147, 208
CviKI_1 RGCY 3 cut(s) 76, 147, 208
CviQI GTAC 2 cut(s) 141, 151
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 145
EciI GGCGGA 1 cut(s) 26
FaeI CATG 1 cut(s) 99
FaiI YATR 2 cut(s) 97, 164
FatI CATG 1 cut(s) 95
GlaI GCGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 147
HhaI GCGC 1 cut(s) 190
Hin1II CATG 1 cut(s) 99
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 2 cut(s) 59, 175
HindII GTYRAC 2 cut(s) 59, 175
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 59, 175
Hpy188III TCNNGA 2 cut(s) 44, 103
Hpy8I GTNNAC 2 cut(s) 59, 175
HpyAV CCTTC 1 cut(s) 107
Hsp92II CATG 1 cut(s) 99
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 29, 77, 129, 161
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 1 cut(s) 81
MluNI TGGCCA 1 cut(s) 147
MnlI CCTC 3 cut(s) 10, 40, 99
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MseI TTAA 2 cut(s) 5, 80
Msp20I TGGCCA 1 cut(s) 147
MvnI CGCG 1 cut(s) 188
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 99
NspI RCATGY 1 cut(s) 99
PfeI GAWTC 1 cut(s) 50
RsaI GTAC 2 cut(s) 142, 152
RsaNI GTAC 2 cut(s) 141, 151
SaqAI TTAA 2 cut(s) 5, 80
Sau3AI GATC 1 cut(s) 28
ScaI AGTACT 1 cut(s) 152
SetI ASST 3 cut(s) 64, 118, 210
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 81
SsiI CCGC 1 cut(s) 11
TasI AATT 1 cut(s) 81
TatI WGTACW 2 cut(s) 140, 150
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 5, 80
Tru9I TTAA 2 cut(s) 5, 80
XceI RCATGY 1 cut(s) 99
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.