Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005271

Physical Location & Seq

Genomic Coordinates Forward (+)

873506 .. 874886

Gene Structure 1381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAGATTCTTCTAGCATCATTGTGTTTGATCAGTCTTCTCGTAATCTTGCCTTCTGTCTTCTCTGCTTCTTCTTCCTCTGAAGATTTTGATTTCTTCTACTTCGTCCAACAATGGCCAGGATCATACTGTGACACACAGAAGAAGTGTTGTTATCCAAATTCAGGCAAACCAGCTGCTGATTTTGGCATTCATGGTCTTTGGCCTAACTACAAAGATGGAACTTATCCATCTAACTGTGATGCCTCTAAACCATTCGATAGCTCAACGATATCAGATCTTCTCACTTCAATGAAGAAGAGCTGGCCAACACTGGCTTGCCCAAGCGGTTCAGGTGAAGCGTTTTGGGAGCACGAATGGGAGAAGCATGGTACTTGCTCTGAATCGGTTATCGATCAACATGAATATTTCCAAACCGCTCTTAACCTTAAACAGAAAACCAATCTCCTTGGAGCTCTAACCAAAGCCGGGATTAATCCGGATGGAAAATCTTACTCTTTGGAGAGCATAAGAGATTCGATAAAAGAGTCAATTGGTTTCACTCCTTGGGTTGAGTGTAACAGAGATGGTTCTGGTAATAGCCAATTGTACCAAGTCTATCTTTGTGTTGACCGGTCTGGTTCCGGTTTAATCGAATGTCCGGTTTTCCCACATGGGAAATGTGGAGCTGAGATCGAATTCCCTTCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009611 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016070 GO:0016787 GO:0016788 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042440 GO:0042594 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0046148 GO:0046283 GO:0046483 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

230

Amino Acids

25.4

Weight (kDa)

5.08

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	30 - 213	6.7e-65	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02990
fragaria_vesca	FvH4_4g31291 FvH4_5g24800
malus_domestica	MD13G1071600.v1.1 MD16G1072300.v1.1 MD16G1072400.v1.1
prunus_persica	Prupe.1G275300_v2.0.a1
pyrus_communis	pycom13g06420 pycom16g06270
rosa_chinensis	RchiOBHm_Chr4g0439741 RchiOBHm_Chr7g0215091 RchiOBHm_Chr7g0215101
rosa_laevigata	RLG00000002691 RLG00000006240
rosa_multiflora	Rmu_sc0001239.1_g000001 Rmu_sc0010226.1_g000008 Rmu_ssc0000029.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380680
rosa_rugosa	Rorug04G0321200 Rorug07G0150100
rosa_samantha	Rh4AG372200 Rh4BG384300 Rh4CG399000 Rh4DG378700 Rh7AG287100 Rh7BG278700 Rh7CG306800
rosa_wichuraiana	Rw4G031780 Rw7G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	419
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	2 cut(s)	327, 417
AclWI	GGATC	1 cut(s)	130
AcoI	YGGCCR	2 cut(s)	116, 305
AcsI	RAATTY	2 cut(s)	160, 677
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	373, 590
AfiI	CCNNNNNNNGG	2 cut(s)	164, 468
AgeI	ACCGGT	1 cut(s)	612
AgsI	TTSAA	1 cut(s)	291
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	5 cut(s)	176, 264, 303, 455, 668
AluI	AGCT	5 cut(s)	176, 264, 303, 455, 668
Alw21I	GWGCWC	2 cut(s)	354, 457
AlwI	GGATC	1 cut(s)	130
AlwNI	CAGNNNCTG	1 cut(s)	179
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	3 cut(s)	116, 203, 305
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	2 cut(s)	160, 677
AseI	ATTAAT	1 cut(s)	474
AsiGI	ACCGGT	1 cut(s)	612
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	347
BalI	TGGCCA	2 cut(s)	118, 307
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	2 cut(s)	29, 52
Bbv12I	GWGCWC	2 cut(s)	354, 457
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	4 cut(s)	212, 238, 476, 560
BciT130I	CCWGG	1 cut(s)	120
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	469
BfaI	CTAG	1 cut(s)	14
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	120, 469
BmiI	GGNNCC	1 cut(s)	622
BmrFI	CCNGG	2 cut(s)	120, 469
BmsI	GCATC	2 cut(s)	26, 232
BpiI	GAAGAC	2 cut(s)	29, 52
BpuMI	CCSGG	1 cut(s)	469
Bsa29I	ATCGAT	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	448, 545
BsaWI	WCCGGW	4 cut(s)	478, 612, 623, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 468
Bse118I	RCCGGY	1 cut(s)	612
Bse1I	ACTGG	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	448, 545
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	2 cut(s)	164, 468
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	3 cut(s)	118, 205, 307
BshTI	ACCGGT	1 cut(s)	612
BshVI	ATCGAT	1 cut(s)	393
BsiHKAI	GWGCWC	2 cut(s)	354, 457
BsiSI	CCGG	5 cut(s)	468, 479, 613, 624, 641
BslI	CCNNNNNNNGG	2 cut(s)	164, 468
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	118, 205, 307
Bsp1286I	GDGCHC	2 cut(s)	354, 457
Bsp13I	TCCGGA	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	30, 122, 277, 394, 672
BspACI	CCGC	2 cut(s)	327, 417
BspANI	GGCC	3 cut(s)	118, 205, 307
BspCNI	CTCAG	1 cut(s)	661
BspDI	ATCGAT	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	130
BspQI	GCTCTTC	1 cut(s)	293
BsrBI	CCGCTC	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	612
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	448, 545
BssMI	GATC	5 cut(s)	30, 122, 277, 394, 672
BssT1I	CCWWGG	2 cut(s)	448, 545
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	131, 239
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	305, 319
BstDEI	CTNAG	1 cut(s)	669
BstF5I	GGATG	1 cut(s)	487
BstKTI	GATC	5 cut(s)	33, 125, 280, 397, 675
BstMBI	GATC	5 cut(s)	30, 122, 277, 394, 672
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	118, 467
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	2 cut(s)	29, 52
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	118, 205, 307
BsuTUI	ATCGAT	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	305, 319
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	612
ClaI	ATCGAT	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	372, 589
CspAI	ACCGGT	1 cut(s)	612
CviAII	CATG	4 cut(s)	194, 368, 401, 653
CviQI	GTAC	2 cut(s)	372, 589
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	5 cut(s)	32, 124, 279, 396, 674
DpnII	GATC	5 cut(s)	30, 122, 277, 394, 672
EaeI	YGGCCR	2 cut(s)	116, 305
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	448, 545
Eco24I	GRGCYC	1 cut(s)	457
Eco32I	GATATC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	455
EcoRI	GAATTC	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	448, 545
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	2 cut(s)	448, 545
FaeI	CATG	4 cut(s)	197, 371, 404, 656
FaiI	YATR	6 cut(s)	127, 195, 369, 402, 509, 654
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	4 cut(s)	193, 367, 400, 652
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	118, 205, 307
HapII	CCGG	5 cut(s)	468, 479, 613, 624, 641
Hin1II	CATG	4 cut(s)	197, 371, 404, 656
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	7, 383, 515, 527
HpaII	CCGG	5 cut(s)	468, 479, 613, 624, 641
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	3 cut(s)	82, 277, 382
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	2 cut(s)	63, 693
HpyCH4III	ACNGT	2 cut(s)	131, 239
HpyF3I	CTNAG	1 cut(s)	669
Hsp92II	CATG	4 cut(s)	197, 371, 404, 656
Kpn2I	TCCGGA	1 cut(s)	478
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	30, 122, 277, 394, 672
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	3 cut(s)	349, 452, 665
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	2 cut(s)	26, 232
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	131, 557
MalI	GATC	5 cut(s)	32, 124, 279, 396, 674
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	5 cut(s)	30, 122, 277, 394, 672
MfeI	CAATTG	2 cut(s)	531, 584
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	354, 457
MlsI	TGGCCA	2 cut(s)	118, 307
MluCI	AATT	4 cut(s)	160, 531, 584, 677
MluNI	TGGCCA	2 cut(s)	118, 307
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	2 cut(s)	88, 256
Mox20I	TGGCCA	2 cut(s)	118, 307
MroI	TCCGGA	1 cut(s)	478
MscI	TGGCCA	2 cut(s)	118, 307
MseI	TTAA	4 cut(s)	423, 429, 474, 629
MslI	CAYNNNNRTG	2 cut(s)	22, 290
Msp20I	TGGCCA	2 cut(s)	118, 307
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	5 cut(s)	468, 479, 613, 624, 641
MspR9I	CCNGG	2 cut(s)	120, 469
MunI	CAATTG	2 cut(s)	531, 584
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	5 cut(s)	30, 122, 277, 394, 672
NlaIII	CATG	4 cut(s)	197, 371, 404, 656
NlaIV	GGNNCC	1 cut(s)	622
NmuCI	GTSAC	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	293
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	7, 383, 515
PinAI	ACCGGT	1 cut(s)	612
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	373, 590
RsaNI	GTAC	2 cut(s)	372, 589
RseI	CAYNNNNRTG	2 cut(s)	22, 290
SacI	GAGCTC	1 cut(s)	457
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	4 cut(s)	423, 429, 474, 629
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	5 cut(s)	30, 122, 277, 394, 672
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	2 cut(s)	120, 469
SduI	GDGCHC	2 cut(s)	354, 457
SetI	ASST	7 cut(s)	178, 266, 305, 337, 429, 457, 670
SfaNI	GCATC	2 cut(s)	26, 232
SmiMI	CAYNNNNRTG	2 cut(s)	22, 290
Sse9I	AATT	4 cut(s)	160, 531, 584, 677
SsiI	CCGC	2 cut(s)	327, 417
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	118, 467
StyI	CCWWGG	2 cut(s)	448, 545
TaaI	ACNGT	2 cut(s)	131, 239
TaqI	TCGA	5 cut(s)	258, 393, 518, 633, 675
TasI	AATT	4 cut(s)	160, 531, 584, 677
TfiI	GAWTC	3 cut(s)	7, 383, 515
Tru1I	TTAA	4 cut(s)	423, 429, 474, 629
Tru9I	TTAA	4 cut(s)	423, 429, 474, 629
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	4 cut(s)	17, 182, 308, 417
TspRI	CASTG	1 cut(s)	318
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	2 cut(s)	160, 677
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.