Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005271

Physical Location & Seq

Genomic Coordinates Reverse (-)

4009923 .. 4010900

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATTCGAAATTCAACCGTTCGATGTTCATCAGGCTCTTCATAATACAGTGTCTAGCAGTTGTTTCTGTTTCTCAGAGTTTTGATTTTTTCTATTTTGTACAGCAGTGGCCGGGATCTTACTGTGACACCGAGGCAAGTTGTTGCTATCCAACGACAGGAAAACCTGCACGAGAATTCGGCATCCATGGGCTTTGGCCTAATTACAATGACGGTTCTTATCCATCCAACTGTGATTCTGACAACCCTTATGATGAATCGAAGGTAGTAATAATTAGAACTAGGATCTCGGACCTGATAAGCAGACTGCAAGCAGATTGGCCTACACTGGCATGCCCCAGCGGGAATGGCTCAAAGTTTTGGGCACATGAGTGGAATAAACATGGGACATGCTCCGAGTCCGTGCTTGACCAACATGGCTACTTTGAGGCCTCTCTCAACCTCAAGGAAAACTTAGACATCTTCCAAATCCTTCAAAATGCTGGAATCCAAGCAGATGGGAATATTTACAGCTTGAGCAGCATAAAAGAAGCTATAAAATCAGCAATTGGGTACACTCCTGGTATAACATGTAACGAAGATGCATCCGGGAATAGCCAGCTTTATGAGGTTTATATTTGTGTGGACACATCTGGCTCAAACCTTATTGAATGTCCAGTGCTGCCCGGGACGAAATGCTCCTCCAAAATTGAGTTCCCTTCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

236

Amino Acids

26.17

Weight (kDa)

4.76

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02990
fragaria_vesca	FvH4_4g31291 FvH4_5g24800
malus_domestica	MD13G1071600.v1.1 MD16G1072300.v1.1 MD16G1072400.v1.1
prunus_persica	Prupe.1G275300_v2.0.a1
pyrus_communis	pycom13g06420 pycom16g06270
rosa_chinensis	RchiOBHm_Chr4g0439741 RchiOBHm_Chr7g0215091 RchiOBHm_Chr7g0215101
rosa_laevigata	RLG00000002691 RLG00000006240
rosa_multiflora	Rmu_sc0001239.1_g000001 Rmu_sc0010226.1_g000008 Rmu_ssc0000029.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380680
rosa_rugosa	Rorug04G0321200 Rorug07G0150100
rosa_samantha	Rh4AG372200 Rh4BG384300 Rh4CG399000 Rh4DG378700 Rh7AG287100 Rh7BG278700 Rh7CG306800
rosa_wichuraiana	Rw4G031780 Rw7G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	2 cut(s)	124, 293
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	11, 176
AfaI	GTAC	2 cut(s)	102, 554
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	3 cut(s)	16, 476, 650
AjnI	CCWGG	1 cut(s)	559
AjuI	GAANNNNNNNTTGG	1 cut(s)	677
AleI	CACNNNNGTG	1 cut(s)	370
AluBI	AGCT	3 cut(s)	513, 533, 601
AluI	AGCT	3 cut(s)	513, 533, 601
AlwI	GGATC	2 cut(s)	124, 293
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	4 cut(s)	110, 197, 320, 429
ApeKI	GCWGC	2 cut(s)	519, 661
ApoI	RAATTY	2 cut(s)	11, 176
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	4 cut(s)	114, 589, 666, 667
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	531, 648
BccI	CCATC	2 cut(s)	232, 491
BciT130I	CCWGG	1 cut(s)	561
BcnI	CCSGG	4 cut(s)	114, 589, 666, 667
BfaI	CTAG	3 cut(s)	56, 282, 706
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	520, 662
BlsI	GCNGC	2 cut(s)	521, 663
Bme1390I	CCNGG	5 cut(s)	114, 561, 589, 666, 667
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	5 cut(s)	114, 561, 589, 666, 667
BmsI	GCATC	3 cut(s)	192, 571, 593
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	428, 535
BpuMI	CCSGG	4 cut(s)	114, 589, 666, 667
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	132, 187, 665
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	333, 656
Bse8I	GATNNNNATC	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	3 cut(s)	132, 187, 665
BseGI	GGATG	3 cut(s)	183, 224, 584
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	333, 656
BseRI	GAGGAG	1 cut(s)	670
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	531, 648
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	112, 199, 322, 431
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	113, 588, 666
BslFI	GGGAC	2 cut(s)	400, 682
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	400, 682
BsnI	GGCC	4 cut(s)	112, 199, 322, 431
BsoBI	CYCGRG	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	116, 285
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	4 cut(s)	112, 199, 322, 431
BspCNI	CTCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	124, 293
BspQI	GCTCTTC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	333, 656
BssECI	CCNNGG	3 cut(s)	132, 187, 665
BssMI	GATC	2 cut(s)	116, 285
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	187
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	5 cut(s)	20, 51, 125, 215, 233
Bst6I	CTCTTC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	312, 334, 599
BstDEI	CTNAG	2 cut(s)	75, 454
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	3 cut(s)	183, 224, 584
BstKTI	GATC	2 cut(s)	119, 288
BstMBI	GATC	2 cut(s)	116, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 519
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	3 cut(s)	336, 393, 573
BstSCI	CCNGG	5 cut(s)	112, 559, 587, 664, 665
BstSLI	GKGCMC	1 cut(s)	367
BstV1I	GCAGC	2 cut(s)	531, 648
BstX2I	RGATCY	2 cut(s)	116, 285
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	2 cut(s)	116, 285
BsuRI	GGCC	4 cut(s)	112, 199, 322, 431
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	3 cut(s)	183, 224, 584
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	4 cut(s)	56, 113, 326, 663
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	3 cut(s)	312, 334, 599
Cfr13I	GGNCC	1 cut(s)	292
Cfr9I	CCCGGG	1 cut(s)	665
Csp6I	GTAC	2 cut(s)	101, 553
CviAII	CATG	7 cut(s)	188, 333, 368, 383, 390, 416, 570
CviQI	GTAC	2 cut(s)	101, 553
DdeI	CTNAG	2 cut(s)	75, 454
DpnI	GATC	2 cut(s)	118, 287
DpnII	GATC	2 cut(s)	116, 285
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	665
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	7 cut(s)	191, 336, 371, 386, 393, 419, 573
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	2 cut(s)	400, 682
FatI	CATG	7 cut(s)	187, 332, 367, 382, 389, 415, 569
FauI	CCCGC	1 cut(s)	335
Fnu4HI	GCNGC	2 cut(s)	520, 662
FokI	GGATG	3 cut(s)	170, 211, 571
Fsp4HI	GCNGC	2 cut(s)	520, 662
FspBI	CTAG	3 cut(s)	56, 282, 706
GluI	GCNGC	2 cut(s)	520, 662
GsaI	CCCAGC	1 cut(s)	342
HaeIII	GGCC	4 cut(s)	112, 199, 322, 431
HapII	CCGG	3 cut(s)	113, 588, 666
Hin1II	CATG	7 cut(s)	191, 336, 371, 386, 393, 419, 573
HinfI	GANTC	5 cut(s)	5, 236, 257, 398, 486
HpaII	CCGG	3 cut(s)	113, 588, 666
Hpy166II	GTNNAC	2 cut(s)	555, 625
Hpy188I	TCNGA	4 cut(s)	78, 241, 292, 397
Hpy8I	GTNNAC	2 cut(s)	555, 625
HpyAV	CCTTC	3 cut(s)	256, 482, 708
HpyCH4III	ACNGT	5 cut(s)	20, 51, 125, 215, 233
HpyCH4V	TGCA	3 cut(s)	170, 310, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 519
HpyF3I	CTNAG	2 cut(s)	75, 454
Hsp92II	CATG	7 cut(s)	191, 336, 371, 386, 393, 419, 573
Kzo9I	GATC	2 cut(s)	116, 285
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	398, 683
Lsp1109I	GCAGC	2 cut(s)	531, 648
LweI	GCATC	3 cut(s)	192, 571, 593
MaeI	CTAG	3 cut(s)	56, 282, 706
MaeIII	GTNAC	2 cut(s)	125, 572
MalI	GATC	2 cut(s)	118, 287
MboI	GATC	2 cut(s)	116, 285
MboII	GAAGA	3 cut(s)	31, 454, 590
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	2 cut(s)	116, 285
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	6 cut(s)	11, 176, 202, 273, 546, 687
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	176, 252
MnlI	CCTC	6 cut(s)	127, 421, 442, 452, 601, 691
Mph1103I	ATGCAT	1 cut(s)	586
MslI	CAYNNNNRTG	2 cut(s)	331, 370
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	3 cut(s)	113, 588, 666
MspR9I	CCNGG	5 cut(s)	114, 561, 589, 666, 667
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	2 cut(s)	348, 519
NciI	CCSGG	4 cut(s)	114, 589, 666, 667
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	2 cut(s)	116, 285
NlaIII	CATG	7 cut(s)	191, 336, 371, 386, 393, 419, 573
NmuCI	GTSAC	1 cut(s)	125
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	3 cut(s)	336, 393, 573
NspV	TTCGAA	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	370
PaeI	GCATGC	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	431
PciI	ACATGT	1 cut(s)	569
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	4 cut(s)	5, 236, 257, 486
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	2 cut(s)	521, 663
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PscI	ACATGT	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	116, 285
RsaI	GTAC	2 cut(s)	102, 554
RsaNI	GTAC	2 cut(s)	101, 553
RseI	CAYNNNNRTG	2 cut(s)	331, 370
SapI	GCTCTTC	1 cut(s)	44
SatI	GCNGC	2 cut(s)	520, 662
Sau3AI	GATC	2 cut(s)	116, 285
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	5 cut(s)	114, 561, 589, 666, 667
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	9 cut(s)	169, 267, 297, 444, 515, 535, 603, 612, 645
SfaNI	GCATC	3 cut(s)	192, 571, 593
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	292
SmaI	CCCGGG	1 cut(s)	667
SmiMI	CAYNNNNRTG	2 cut(s)	331, 370
SmlI	CTYRAG	2 cut(s)	443, 514
SmoI	CTYRAG	2 cut(s)	443, 514
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	6 cut(s)	11, 176, 202, 273, 546, 687
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	3 cut(s)	56, 282, 706
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	5 cut(s)	112, 559, 587, 664, 665
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	5 cut(s)	20, 51, 125, 215, 233
TaqI	TCGA	3 cut(s)	8, 23, 260
TasI	AATT	6 cut(s)	11, 176, 202, 273, 546, 687
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	4 cut(s)	5, 236, 257, 486
TscAI	CASTG	4 cut(s)	56, 113, 333, 663
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	519, 661
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	19, 31, 270
TspGWI	ACGGA	1 cut(s)	391
TspMI	CCCGGG	1 cut(s)	665
TspRI	CASTG	4 cut(s)	56, 113, 333, 663
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	2 cut(s)	11, 176
XceI	RCATGY	3 cut(s)	336, 393, 573
XmaI	CCCGGG	1 cut(s)	665
XspI	CTAG	3 cut(s)	56, 282, 706
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.