Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005271

Physical Location & Seq

Genomic Coordinates Reverse (-)

60848481 .. 60850027

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGTCCATCCCCTCAAAAATGGTCAAGCTTCTAATACTAACACTAGTAGGATCATCATGTCTTTCGGTCCTTTGTGCTGCAGAAGATTTTGATTTCTTCTACTTTGTTCAGCAGTGGCCAGGTTCATTCTGTGATACACAGAAAAGTTGCTGCTATCCAACCACAGGGAAGCCTGCAGCAGATTTTGGGATTCATGGGCTCTGGCCAAATTACAAGGATGGTTCATACCCCTCAAACTGTGATCCAAACAACCCCTTTGATCAATCTCAGGTTTCAGATTTAATTAGCAGTATGCAAGAAGAATGGCCAACACTAGCATGCCCTAGCAGCAGCGGGATTGCGTTCTGGACACACGAGTGGGAAAAACATGGAACATGCTCCGAGTCTGCCATTAACCAACATAGTTACTTTGCAGCAGCTCTTGACCTCAAGAAGAAGGCCAACCTCCTCCAAGCTCTTCAAAGTGCAGGTATTAAACCCAACGGCGAGTCTTATACCCTGGCGGACATCAAGGGGGCACTGAAAGATGCAATTGGGTACACTCCATATATCGAGTGCAACGTTGATCAGTCCGGCAACAGCCAACTTTACCAGGTCTACTTGTGCGTGGACACTAATGGCTCTGACCTCATTGAGTGCCCAGTTTTTCCCCATGGGAAATGTGGTTCAAGCATCGAGTTTCCTACCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009611 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016070 GO:0016787 GO:0016788 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042440 GO:0042594 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0046148 GO:0046283 GO:0046483 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

231

Amino Acids

25.32

Weight (kDa)

4.79

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	31 - 214	2.9e-65	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02990
fragaria_vesca	FvH4_4g31291 FvH4_5g24800
malus_domestica	MD13G1071600.v1.1 MD16G1072300.v1.1 MD16G1072400.v1.1
prunus_persica	Prupe.1G275300_v2.0.a1
pyrus_communis	pycom13g06420 pycom16g06270
rosa_chinensis	RchiOBHm_Chr4g0439741 RchiOBHm_Chr7g0215091 RchiOBHm_Chr7g0215101
rosa_laevigata	RLG00000002691 RLG00000006240
rosa_multiflora	Rmu_sc0001239.1_g000001 Rmu_sc0010226.1_g000008 Rmu_ssc0000029.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380680
rosa_rugosa	Rorug04G0321200 Rorug07G0150100
rosa_samantha	Rh4AG372200 Rh4BG384300 Rh4CG399000 Rh4DG378700 Rh7AG287100 Rh7BG278700 Rh7CG306800
rosa_wichuraiana	Rw4G031780 Rw7G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	2 cut(s)	336, 506
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	2 cut(s)	61, 239
AcoI	YGGCCR	3 cut(s)	119, 206, 308
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	464, 672
AhlI	ACTAGT	1 cut(s)	46
AjnI	CCWGG	3 cut(s)	121, 501, 594
AleI	CACNNNNGTG	1 cut(s)	358
AloI	GAACNNNNNNTCC	2 cut(s)	652, 684
AluBI	AGCT	3 cut(s)	31, 422, 458
AluI	AGCT	3 cut(s)	31, 422, 458
AlwI	GGATC	2 cut(s)	61, 239
AoxI	GGCC	4 cut(s)	119, 206, 308, 441
ApeKI	GCWGC	7 cut(s)	80, 153, 179, 330, 333, 416, 419
AspS9I	GGNCC	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	70
BaeGI	GKGCMC	2 cut(s)	523, 644
BalI	TGGCCA	3 cut(s)	121, 208, 310
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	356
BbvI	GCAGC	7 cut(s)	67, 140, 191, 342, 345, 428, 431
BccI	CCATC	2 cut(s)	17, 215
BceAI	ACGGC	1 cut(s)	502
BciT130I	CCWGG	3 cut(s)	123, 503, 596
BclI	TGATCA	2 cut(s)	262, 568
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	4 cut(s)	47, 317, 327, 694
BfmI	CTRYAG	2 cut(s)	81, 177
BfuAI	ACCTGC	1 cut(s)	461
BisI	GCNGC	7 cut(s)	81, 154, 180, 331, 334, 417, 420
BlsI	GCNGC	7 cut(s)	82, 155, 181, 332, 335, 418, 421
Bme1390I	CCNGG	3 cut(s)	123, 503, 596
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	123, 503, 596
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	2 cut(s)	520, 684
BmuI	ACTGGG	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	501, 655
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	644
BseBI	CCWGG	3 cut(s)	123, 503, 596
BseDI	CCNNGG	2 cut(s)	501, 655
BseGI	GGATG	2 cut(s)	9, 226
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	2 cut(s)	523, 644
BseXI	GCAGC	7 cut(s)	67, 140, 191, 342, 345, 428, 431
BsgI	GTGCAG	1 cut(s)	489
BshFI	GGCC	4 cut(s)	121, 208, 310, 443
BsiSI	CCGG	1 cut(s)	576
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	4 cut(s)	121, 208, 310, 443
Bsp1286I	GDGCHC	3 cut(s)	204, 523, 644
Bsp143I	GATC	4 cut(s)	53, 244, 262, 568
Bsp19I	CCATGG	1 cut(s)	655
BspACI	CCGC	2 cut(s)	336, 506
BspANI	GGCC	4 cut(s)	121, 208, 310, 443
BspCNI	CTCAG	1 cut(s)	283
BspMAI	CTGCAG	2 cut(s)	85, 181
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	61, 239
BspQI	GCTCTTC	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	501, 655
BssMI	GATC	4 cut(s)	53, 244, 262, 568
BssSI	CACGAG	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	655
Bst2BI	CACGAG	1 cut(s)	356
Bst2UI	CCWGG	3 cut(s)	123, 503, 596
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	177, 322
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	655
BstF5I	GGATG	2 cut(s)	9, 226
BstKTI	GATC	4 cut(s)	56, 247, 265, 571
BstMBI	GATC	4 cut(s)	53, 244, 262, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	3 cut(s)	123, 503, 596
BstNSI	RCATGY	2 cut(s)	324, 381
BstSCI	CCNGG	3 cut(s)	121, 501, 594
BstSFI	CTRYAG	2 cut(s)	81, 177
BstSLI	GKGCMC	2 cut(s)	523, 644
BstV1I	GCAGC	7 cut(s)	67, 140, 191, 342, 345, 428, 431
BsuRI	GGCC	4 cut(s)	121, 208, 310, 443
BtgI	CCRYGG	1 cut(s)	655
BtsCI	GGATG	2 cut(s)	9, 226
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	122, 521
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	177, 322
Cfr13I	GGNCC	1 cut(s)	70
CsiI	ACCWGGT	1 cut(s)	594
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	6 cut(s)	60, 197, 321, 371, 378, 656
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	4 cut(s)	55, 246, 264, 570
DpnII	GATC	4 cut(s)	53, 244, 262, 568
EaeI	YGGCCR	3 cut(s)	119, 206, 308
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
EciI	GGCGGA	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	70
EcoRII	CCWGG	3 cut(s)	121, 501, 594
EcoT14I	CCWWGG	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	655
FaeI	CATG	6 cut(s)	63, 200, 324, 374, 381, 659
FatI	CATG	6 cut(s)	59, 196, 320, 370, 377, 655
FauI	CCCGC	1 cut(s)	329
FbaI	TGATCA	2 cut(s)	262, 568
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	7 cut(s)	81, 154, 180, 331, 334, 417, 420
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	7 cut(s)	81, 154, 180, 331, 334, 417, 420
FspBI	CTAG	4 cut(s)	47, 317, 327, 694
GluI	GCNGC	7 cut(s)	81, 154, 180, 331, 334, 417, 420
HaeIII	GGCC	4 cut(s)	121, 208, 310, 443
HapII	CCGG	1 cut(s)	576
Hin1II	CATG	6 cut(s)	63, 200, 324, 374, 381, 659
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	193, 386, 491
HpaII	CCGG	1 cut(s)	576
Hpy166II	GTNNAC	3 cut(s)	543, 601, 613
Hpy188I	TCNGA	3 cut(s)	280, 385, 628
Hpy188III	TCNNGA	3 cut(s)	349, 425, 433
Hpy8I	GTNNAC	3 cut(s)	543, 601, 613
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	7 cut(s)	83, 179, 298, 416, 470, 533, 561
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	6 cut(s)	63, 200, 324, 374, 381, 659
Ksp22I	TGATCA	2 cut(s)	262, 568
Kzo9I	GATC	4 cut(s)	53, 244, 262, 568
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	386
Lsp1109I	GCAGC	7 cut(s)	67, 140, 191, 342, 345, 428, 431
LweI	GCATC	2 cut(s)	520, 684
MabI	ACCWGGT	1 cut(s)	594
MaeI	CTAG	4 cut(s)	47, 317, 327, 694
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	4 cut(s)	55, 246, 264, 570
MboI	GATC	4 cut(s)	53, 244, 262, 568
MboII	GAAGA	5 cut(s)	91, 98, 314, 448, 452
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	3 cut(s)	204, 523, 644
MlsI	TGGCCA	3 cut(s)	121, 208, 310
MluCI	AATT	3 cut(s)	211, 285, 534
MluNI	TGGCCA	3 cut(s)	121, 208, 310
MlyI	GAGTC	2 cut(s)	395, 500
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	6 cut(s)	25, 244, 440, 458, 461, 641
Mox20I	TGGCCA	3 cut(s)	121, 208, 310
MscI	TGGCCA	3 cut(s)	121, 208, 310
MseI	TTAA	3 cut(s)	284, 396, 477
MslI	CAYNNNNRTG	2 cut(s)	319, 358
Msp20I	TGGCCA	3 cut(s)	121, 208, 310
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	3 cut(s)	123, 503, 596
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	3 cut(s)	123, 503, 596
MwoI	GCNNNNNNNGC	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	655
NdeII	GATC	4 cut(s)	53, 244, 262, 568
NlaIII	CATG	6 cut(s)	63, 200, 324, 374, 381, 659
NspI	RCATGY	2 cut(s)	324, 381
OliI	CACNNNNGTG	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	7 cut(s)	82, 155, 181, 332, 335, 418, 421
PleI	GAGTC	2 cut(s)	394, 499
PpsI	GAGTC	2 cut(s)	394, 499
Psp1406I	AACGTT	1 cut(s)	564
Psp6I	CCWGG	3 cut(s)	121, 501, 594
PspGI	CCWGG	3 cut(s)	121, 501, 594
PspPI	GGNCC	1 cut(s)	70
PstI	CTGCAG	2 cut(s)	85, 181
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	2 cut(s)	319, 358
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	3 cut(s)	284, 396, 477
SatI	GCNGC	7 cut(s)	81, 154, 180, 331, 334, 417, 420
Sau3AI	GATC	4 cut(s)	53, 244, 262, 568
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	395, 500
ScrFI	CCNGG	3 cut(s)	123, 503, 596
SduI	GDGCHC	3 cut(s)	204, 523, 644
SexAI	ACCWGGT	1 cut(s)	594
SfaNI	GCATC	2 cut(s)	520, 684
SfcI	CTRYAG	2 cut(s)	81, 177
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	319, 358
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	46
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	3 cut(s)	211, 285, 534
SsiI	CCGC	2 cut(s)	336, 506
SspMI	CTAG	4 cut(s)	47, 317, 327, 694
StyD4I	CCNGG	3 cut(s)	121, 501, 594
StyI	CCWWGG	1 cut(s)	655
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	2 cut(s)	555, 678
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	211, 285, 534
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	284, 396, 477
Tru9I	TTAA	3 cut(s)	284, 396, 477
TscAI	CASTG	2 cut(s)	122, 528
TseI	GCWGC	7 cut(s)	80, 153, 179, 330, 333, 416, 419
TspDTI	ATGAA	4 cut(s)	17, 117, 185, 216
TspRI	CASTG	2 cut(s)	122, 528
VpaK11BI	GGWCC	1 cut(s)	70
XceI	RCATGY	2 cut(s)	324, 381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	4 cut(s)	47, 317, 327, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.