Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005271

Physical Location & Seq

Genomic Coordinates Reverse (-)

59662944 .. 59664794

Gene Structure 1851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG378700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTTAATGCAGTGGCCAGGATCATTCTGTGATACACAGAAAAGTTGCTGCTATCCAACCACAGGGAAGCCTGCAGCAGATTTTGGGATTCATGGGCTCTGGCCAAATTACAAGGATGGTTCATACCCCTCAAACTGTGATCCAAACAACCCCTTTGATCAATCTCAGGTTTCAGATTTAATTAGCAGTATGCAAGAAGAATGGCCAACACTAGCATGCCCTAGCAGCAGCGGGATTGCGTTCTGGACACACGAGTGGGAAAAACATGGAACCTGCTCCGAGTCTGCCATTAACCAACATAGTTACTTTGCAGCAGCTCTTGACCTCAAGAAGAAGGCCAACCTCCTCCAAGCTCTTCAAAGTGCAGGTATTAAACCCAACGGCGAGTCTTATACCCTGGCGGACATCAAGGGGGCCCTGAAAGGTTCAATCGGGTACACTCCATATATCGAGTGCAACGTTGATCAGTCCGGCAACAGCCAACTTTACCAGGTCTACTTGTGCGTGGATACTAATGGCTCTGACCTCATTGAGTGCCCAGTTTTTCCCCATGGGAAATGTGGTTCAAGCATCGAGTTTCCTACCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009611 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016070 GO:0016787 GO:0016788 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042440 GO:0042594 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0046148 GO:0046283 GO:0046483 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

196

Amino Acids

21.43

Weight (kDa)

4.82

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	3 - 179	1.9e-61	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02990
fragaria_vesca	FvH4_4g31291 FvH4_5g24800
malus_domestica	MD13G1071600.v1.1 MD16G1072300.v1.1 MD16G1072400.v1.1
prunus_persica	Prupe.1G275300_v2.0.a1
pyrus_communis	pycom13g06420 pycom16g06270
rosa_chinensis	RchiOBHm_Chr4g0439741 RchiOBHm_Chr7g0215091 RchiOBHm_Chr7g0215101
rosa_laevigata	RLG00000002691 RLG00000006240
rosa_multiflora	Rmu_sc0001239.1_g000001 Rmu_sc0010226.1_g000008 Rmu_ssc0000029.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380680
rosa_rugosa	Rorug04G0321200 Rorug07G0150100
rosa_samantha	Rh4AG372200 Rh4BG384300 Rh4CG399000 Rh4DG378700 Rh7AG287100 Rh7BG278700 Rh7CG306800
rosa_wichuraiana	Rw4G031780 Rw7G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	281, 356
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	2 cut(s)	231, 401
AclI	AACGTT	1 cut(s)	459
AclWI	GGATC	2 cut(s)	28, 134
AcoI	YGGCCR	3 cut(s)	14, 101, 203
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	359, 429, 567
AjnI	CCWGG	3 cut(s)	16, 396, 489
AleI	CACNNNNGTG	1 cut(s)	253
AloI	GAACNNNNNNTCC	2 cut(s)	547, 579
AluBI	AGCT	2 cut(s)	317, 353
AluI	AGCT	2 cut(s)	317, 353
AlwI	GGATC	2 cut(s)	28, 134
AoxI	GGCC	5 cut(s)	14, 101, 203, 336, 414
ApaI	GGGCCC	1 cut(s)	418
ApeKI	GCWGC	6 cut(s)	48, 74, 225, 228, 311, 314
AspS9I	GGNCC	2 cut(s)	414, 415
BaeGI	GKGCMC	2 cut(s)	418, 539
BalI	TGGCCA	3 cut(s)	16, 103, 205
BanII	GRGCYC	2 cut(s)	99, 418
BauI	CACGAG	1 cut(s)	251
BbvI	GCAGC	6 cut(s)	35, 86, 237, 240, 323, 326
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	3 cut(s)	18, 398, 491
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	2 cut(s)	157, 463
BfaI	CTAG	3 cut(s)	212, 222, 589
BfmI	CTRYAG	1 cut(s)	72
BfuAI	ACCTGC	2 cut(s)	281, 356
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	6 cut(s)	49, 75, 226, 229, 312, 315
BlsI	GCNGC	6 cut(s)	50, 76, 227, 230, 313, 316
Bme1390I	CCNGG	3 cut(s)	18, 398, 491
BmgT120I	GGNCC	2 cut(s)	414, 415
BmiI	GGNNCC	3 cut(s)	271, 415, 416
BmrFI	CCNGG	3 cut(s)	18, 398, 491
BmrI	ACTGGG	1 cut(s)	533
BmsI	GCATC	1 cut(s)	579
BmuI	ACTGGG	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	396, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	3 cut(s)	18, 398, 491
BseDI	CCNNGG	2 cut(s)	396, 550
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	2 cut(s)	418, 539
BseXI	GCAGC	6 cut(s)	35, 86, 237, 240, 323, 326
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	5 cut(s)	16, 103, 205, 338, 416
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	62
BsnI	GGCC	5 cut(s)	16, 103, 205, 338, 416
Bsp120I	GGGCCC	1 cut(s)	414
Bsp1286I	GDGCHC	3 cut(s)	99, 418, 539
Bsp143I	GATC	4 cut(s)	20, 139, 157, 463
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	2 cut(s)	231, 401
BspANI	GGCC	5 cut(s)	16, 103, 205, 338, 416
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	271, 415, 416
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	2 cut(s)	281, 356
BspPI	GGATC	2 cut(s)	28, 134
BspQI	GCTCTTC	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	396, 550
BssMI	GATC	4 cut(s)	20, 139, 157, 463
BssSI	CACGAG	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	550
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	3 cut(s)	18, 398, 491
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	72, 217
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	4 cut(s)	23, 142, 160, 466
BstMBI	GATC	4 cut(s)	20, 139, 157, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	3 cut(s)	18, 398, 491
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	16, 396, 489
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	2 cut(s)	418, 539
BstV1I	GCAGC	6 cut(s)	35, 86, 237, 240, 323, 326
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	5 cut(s)	16, 103, 205, 338, 416
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	17
BveI	ACCTGC	2 cut(s)	281, 356
Cac8I	GCNNGC	2 cut(s)	72, 217
Cfr13I	GGNCC	2 cut(s)	414, 415
CsiI	ACCWGGT	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	4 cut(s)	92, 216, 266, 551
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	4 cut(s)	22, 141, 159, 465
DpnII	GATC	4 cut(s)	20, 139, 157, 463
EaeI	YGGCCR	3 cut(s)	14, 101, 203
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	550
Eco24I	GRGCYC	2 cut(s)	99, 418
EcoO109I	RGGNCCY	2 cut(s)	414, 415
EcoRII	CCWGG	3 cut(s)	16, 396, 489
EcoT14I	CCWWGG	1 cut(s)	550
EcoT38I	GRGCYC	2 cut(s)	99, 418
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	4 cut(s)	95, 219, 269, 554
FatI	CATG	4 cut(s)	91, 215, 265, 550
FauI	CCCGC	1 cut(s)	224
FbaI	TGATCA	2 cut(s)	157, 463
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	6 cut(s)	49, 75, 226, 229, 312, 315
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	2 cut(s)	99, 418
Fsp4HI	GCNGC	6 cut(s)	49, 75, 226, 229, 312, 315
FspBI	CTAG	3 cut(s)	212, 222, 589
GluI	GCNGC	6 cut(s)	49, 75, 226, 229, 312, 315
HaeIII	GGCC	5 cut(s)	16, 103, 205, 338, 416
HapII	CCGG	1 cut(s)	471
Hin1II	CATG	4 cut(s)	95, 219, 269, 554
HinfI	GANTC	3 cut(s)	88, 281, 386
HpaII	CCGG	1 cut(s)	471
Hpy166II	GTNNAC	2 cut(s)	438, 496
Hpy188I	TCNGA	3 cut(s)	175, 280, 523
Hpy188III	TCNNGA	3 cut(s)	244, 320, 328
Hpy8I	GTNNAC	2 cut(s)	438, 496
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	6 cut(s)	10, 74, 193, 311, 365, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	95, 219, 269, 554
Ksp22I	TGATCA	2 cut(s)	157, 463
Kzo9I	GATC	4 cut(s)	20, 139, 157, 463
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	6 cut(s)	35, 86, 237, 240, 323, 326
LweI	GCATC	1 cut(s)	579
MabI	ACCWGGT	1 cut(s)	489
MaeI	CTAG	3 cut(s)	212, 222, 589
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	4 cut(s)	22, 141, 159, 465
MboI	GATC	4 cut(s)	20, 139, 157, 463
MboII	GAAGA	3 cut(s)	209, 343, 347
MhlI	GDGCHC	3 cut(s)	99, 418, 539
MlsI	TGGCCA	3 cut(s)	16, 103, 205
MluCI	AATT	2 cut(s)	106, 180
MluNI	TGGCCA	3 cut(s)	16, 103, 205
MlyI	GAGTC	2 cut(s)	290, 395
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	139, 335, 353, 356, 536
Mox20I	TGGCCA	3 cut(s)	16, 103, 205
MscI	TGGCCA	3 cut(s)	16, 103, 205
MseI	TTAA	4 cut(s)	5, 179, 291, 372
MslI	CAYNNNNRTG	2 cut(s)	214, 253
Msp20I	TGGCCA	3 cut(s)	16, 103, 205
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	3 cut(s)	18, 398, 491
MvaI	CCWGG	3 cut(s)	18, 398, 491
MwoI	GCNNNNNNNGC	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	550
NdeII	GATC	4 cut(s)	20, 139, 157, 463
NlaIII	CATG	4 cut(s)	95, 219, 269, 554
NlaIV	GGNNCC	3 cut(s)	271, 415, 416
NspI	RCATGY	1 cut(s)	219
OliI	CACNNNNGTG	1 cut(s)	253
PaeI	GCATGC	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	6 cut(s)	50, 76, 227, 230, 313, 316
PleI	GAGTC	2 cut(s)	289, 394
PpsI	GAGTC	2 cut(s)	289, 394
Psp1406I	AACGTT	1 cut(s)	459
Psp6I	CCWGG	3 cut(s)	16, 396, 489
PspGI	CCWGG	3 cut(s)	16, 396, 489
PspN4I	GGNNCC	3 cut(s)	271, 415, 416
PspOMI	GGGCCC	1 cut(s)	414
PspPI	GGNCC	2 cut(s)	414, 415
PstI	CTGCAG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	2 cut(s)	214, 253
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	4 cut(s)	5, 179, 291, 372
SatI	GCNGC	6 cut(s)	49, 75, 226, 229, 312, 315
Sau3AI	GATC	4 cut(s)	20, 139, 157, 463
Sau96I	GGNCC	2 cut(s)	414, 415
SchI	GAGTC	2 cut(s)	290, 395
ScrFI	CCNGG	3 cut(s)	18, 398, 491
SduI	GDGCHC	3 cut(s)	99, 418, 539
SexAI	ACCWGGT	1 cut(s)	489
SfaNI	GCATC	1 cut(s)	579
SfcI	CTRYAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	2 cut(s)	214, 253
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	2 cut(s)	106, 180
SsiI	CCGC	2 cut(s)	231, 401
SspMI	CTAG	3 cut(s)	212, 222, 589
StyD4I	CCNGG	3 cut(s)	16, 396, 489
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	450, 573
TasI	AATT	2 cut(s)	106, 180
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	4 cut(s)	5, 179, 291, 372
Tru9I	TTAA	4 cut(s)	5, 179, 291, 372
TscAI	CASTG	1 cut(s)	17
TseI	GCWGC	6 cut(s)	48, 74, 225, 228, 311, 314
TspDTI	ATGAA	2 cut(s)	80, 111
TspRI	CASTG	1 cut(s)	17
XceI	RCATGY	1 cut(s)	219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	3 cut(s)	212, 222, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.