Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000029.1

Orthogroup ID

OG0005271

Physical Location & Seq

Genomic Coordinates Forward (+)

52084 .. 53575

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000029.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggtcaagcttctaatactagcactagtaggatcatcatgtctttcggtcctttgtgctgcagaagattttgatttcttctactttgttcagcagtggccaggatcattctgtgatacacagaaaagttgctgctatccaaccacagggaagcctgcagcagattttgggattcatgggctctggccaaattacaaggatggttcatacccctcaaactgtgatccaaacaacccctttgatcaatctcaggtttcagatttaattagcagtatgcaagaagaatggccaacactagcatgccctagcagcagcgggattgcgttctggacacacgagtgggaaaaacatggaacctgctccgagtctgccattaaccaacatagttactttgcagcagctcttgacctcaagaagaaggccaacctcctacaagctcttcaaagtgcaggtattaaacccaacggcgagtcttataccctggcggacatcaagggggccctgaaagatggaatcgggtacactccatatatcgagtgcaacgttgatcagtccggcaacagccaactttaccaggtctacttgtgcgtggatactaatggctctgacctcattgattgcccagtttttccccatgggaaatgtggttcaagcatcgagtttcctaccttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009611 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016070 GO:0016787 GO:0016788 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042440 GO:0042594 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0046148 GO:0046283 GO:0046483 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

224

Amino Acids

24.49

Weight (kDa)

4.59

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02990
fragaria_vesca	FvH4_4g31291 FvH4_5g24800
malus_domestica	MD13G1071600.v1.1 MD16G1072300.v1.1 MD16G1072400.v1.1
prunus_persica	Prupe.1G275300_v2.0.a1
pyrus_communis	pycom13g06420 pycom16g06270
rosa_chinensis	RchiOBHm_Chr4g0439741 RchiOBHm_Chr7g0215091 RchiOBHm_Chr7g0215101
rosa_laevigata	RLG00000002691 RLG00000006240
rosa_multiflora	Rmu_sc0001239.1_g000001 Rmu_sc0010226.1_g000008 Rmu_ssc0000029.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380680
rosa_rugosa	Rorug04G0321200 Rorug07G0150100
rosa_samantha	Rh4AG372200 Rh4BG384300 Rh4CG399000 Rh4DG378700 Rh7AG287100 Rh7BG278700 Rh7CG306800
rosa_wichuraiana	Rw4G031780 Rw7G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	365, 440
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	2 cut(s)	315, 485
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	3 cut(s)	40, 112, 218
AcoI	YGGCCR	3 cut(s)	98, 185, 287
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	443, 651
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	3 cut(s)	100, 480, 573
AleI	CACNNNNGTG	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	631, 663
AluBI	AGCT	3 cut(s)	10, 401, 437
AluI	AGCT	3 cut(s)	10, 401, 437
AlwI	GGATC	3 cut(s)	40, 112, 218
AoxI	GGCC	5 cut(s)	98, 185, 287, 420, 498
ApaI	GGGCCC	1 cut(s)	502
ApeKI	GCWGC	7 cut(s)	59, 132, 158, 309, 312, 395, 398
AspS9I	GGNCC	3 cut(s)	49, 498, 499
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	502
BalI	TGGCCA	3 cut(s)	100, 187, 289
BanII	GRGCYC	2 cut(s)	183, 502
BauI	CACGAG	1 cut(s)	335
BbvI	GCAGC	7 cut(s)	46, 119, 170, 321, 324, 407, 410
BccI	CCATC	2 cut(s)	194, 503
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	3 cut(s)	102, 482, 575
BciVI	GTATCC	1 cut(s)	586
BclI	TGATCA	2 cut(s)	241, 547
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	5 cut(s)	20, 26, 296, 306, 673
BfmI	CTRYAG	2 cut(s)	60, 156
BfuAI	ACCTGC	2 cut(s)	365, 440
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
BlsI	GCNGC	7 cut(s)	61, 134, 160, 311, 314, 397, 400
Bme1390I	CCNGG	3 cut(s)	102, 482, 575
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	49, 498, 499
BmiI	GGNNCC	3 cut(s)	355, 499, 500
BmrFI	CCNGG	3 cut(s)	102, 482, 575
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	480, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	623
BseBI	CCWGG	3 cut(s)	102, 482, 575
BseDI	CCNNGG	2 cut(s)	480, 634
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	623
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	7 cut(s)	46, 119, 170, 321, 324, 407, 410
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	5 cut(s)	100, 187, 289, 422, 500
BsiSI	CCGG	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	5 cut(s)	100, 187, 289, 422, 500
Bsp120I	GGGCCC	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	183, 502
Bsp143I	GATC	5 cut(s)	32, 104, 223, 241, 547
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	2 cut(s)	315, 485
BspANI	GGCC	5 cut(s)	100, 187, 289, 422, 500
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	355, 499, 500
BspMAI	CTGCAG	2 cut(s)	64, 160
BspMI	ACCTGC	2 cut(s)	365, 440
BspPI	GGATC	3 cut(s)	40, 112, 218
BspQI	GCTCTTC	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	480, 634
BssMI	GATC	5 cut(s)	32, 104, 223, 241, 547
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	634
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	3 cut(s)	102, 482, 575
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	156, 301
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	5 cut(s)	35, 107, 226, 244, 550
BstMBI	GATC	5 cut(s)	32, 104, 223, 241, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	3 cut(s)	102, 482, 575
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	3 cut(s)	100, 480, 573
BstSFI	CTRYAG	2 cut(s)	60, 156
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	7 cut(s)	46, 119, 170, 321, 324, 407, 410
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	5 cut(s)	100, 187, 289, 422, 500
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
BveI	ACCTGC	2 cut(s)	365, 440
Cac8I	GCNNGC	2 cut(s)	156, 301
Cfr13I	GGNCC	3 cut(s)	49, 498, 499
CsiI	ACCWGGT	1 cut(s)	573
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	5 cut(s)	39, 176, 300, 350, 635
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	5 cut(s)	34, 106, 225, 243, 549
DpnII	GATC	5 cut(s)	32, 104, 223, 241, 547
EaeI	YGGCCR	3 cut(s)	98, 185, 287
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	634
Eco24I	GRGCYC	2 cut(s)	183, 502
Eco47I	GGWCC	1 cut(s)	49
EcoO109I	RGGNCCY	2 cut(s)	498, 499
EcoRII	CCWGG	3 cut(s)	100, 480, 573
EcoT14I	CCWWGG	1 cut(s)	634
EcoT38I	GRGCYC	2 cut(s)	183, 502
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	5 cut(s)	42, 179, 303, 353, 638
FatI	CATG	5 cut(s)	38, 175, 299, 349, 634
FauI	CCCGC	1 cut(s)	308
FbaI	TGATCA	2 cut(s)	241, 547
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	2 cut(s)	183, 502
Fsp4HI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
FspBI	CTAG	5 cut(s)	20, 26, 296, 306, 673
GluI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
HaeIII	GGCC	5 cut(s)	100, 187, 289, 422, 500
HapII	CCGG	1 cut(s)	555
Hin1II	CATG	5 cut(s)	42, 179, 303, 353, 638
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	4 cut(s)	172, 365, 470, 513
HpaII	CCGG	1 cut(s)	555
Hpy166II	GTNNAC	2 cut(s)	522, 580
Hpy188I	TCNGA	3 cut(s)	259, 364, 607
Hpy188III	TCNNGA	3 cut(s)	328, 404, 412
Hpy8I	GTNNAC	2 cut(s)	522, 580
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	6 cut(s)	62, 158, 277, 395, 449, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	5 cut(s)	42, 179, 303, 353, 638
Ksp22I	TGATCA	2 cut(s)	241, 547
Kzo9I	GATC	5 cut(s)	32, 104, 223, 241, 547
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	7 cut(s)	46, 119, 170, 321, 324, 407, 410
LweI	GCATC	1 cut(s)	663
MabI	ACCWGGT	1 cut(s)	573
MaeI	CTAG	5 cut(s)	20, 26, 296, 306, 673
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	5 cut(s)	34, 106, 225, 243, 549
MboI	GATC	5 cut(s)	32, 104, 223, 241, 547
MboII	GAAGA	5 cut(s)	70, 77, 293, 427, 431
MhlI	GDGCHC	2 cut(s)	183, 502
MlsI	TGGCCA	3 cut(s)	100, 187, 289
MluCI	AATT	2 cut(s)	190, 264
MluNI	TGGCCA	3 cut(s)	100, 187, 289
MlyI	GAGTC	2 cut(s)	374, 479
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	4 cut(s)	223, 419, 437, 620
Mox20I	TGGCCA	3 cut(s)	100, 187, 289
MscI	TGGCCA	3 cut(s)	100, 187, 289
MseI	TTAA	3 cut(s)	263, 375, 456
MslI	CAYNNNNRTG	2 cut(s)	298, 337
Msp20I	TGGCCA	3 cut(s)	100, 187, 289
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	3 cut(s)	102, 482, 575
MvaI	CCWGG	3 cut(s)	102, 482, 575
MwoI	GCNNNNNNNGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	5 cut(s)	32, 104, 223, 241, 547
NlaIII	CATG	5 cut(s)	42, 179, 303, 353, 638
NlaIV	GGNNCC	3 cut(s)	355, 499, 500
NspI	RCATGY	1 cut(s)	303
OliI	CACNNNNGTG	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	303
PciSI	GCTCTTC	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	172, 513
PkrI	GCNGC	7 cut(s)	61, 134, 160, 311, 314, 397, 400
PleI	GAGTC	2 cut(s)	373, 478
PpsI	GAGTC	2 cut(s)	373, 478
Psp1406I	AACGTT	1 cut(s)	543
Psp6I	CCWGG	3 cut(s)	100, 480, 573
PspGI	CCWGG	3 cut(s)	100, 480, 573
PspN4I	GGNNCC	3 cut(s)	355, 499, 500
PspOMI	GGGCCC	1 cut(s)	498
PspPI	GGNCC	3 cut(s)	49, 498, 499
PstI	CTGCAG	2 cut(s)	64, 160
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	2 cut(s)	298, 337
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	263, 375, 456
SatI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
Sau3AI	GATC	5 cut(s)	32, 104, 223, 241, 547
Sau96I	GGNCC	3 cut(s)	49, 498, 499
SchI	GAGTC	2 cut(s)	374, 479
ScrFI	CCNGG	3 cut(s)	102, 482, 575
SduI	GDGCHC	2 cut(s)	183, 502
SexAI	ACCWGGT	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	663
SfcI	CTRYAG	2 cut(s)	60, 156
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	298, 337
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	25
SphI	GCATGC	1 cut(s)	303
Sse9I	AATT	2 cut(s)	190, 264
SsiI	CCGC	2 cut(s)	315, 485
SspMI	CTAG	5 cut(s)	20, 26, 296, 306, 673
StyD4I	CCNGG	3 cut(s)	100, 480, 573
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	2 cut(s)	534, 657
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	190, 264
TfiI	GAWTC	2 cut(s)	172, 513
Tru1I	TTAA	3 cut(s)	263, 375, 456
Tru9I	TTAA	3 cut(s)	263, 375, 456
TscAI	CASTG	1 cut(s)	101
TseI	GCWGC	7 cut(s)	59, 132, 158, 309, 312, 395, 398
TspDTI	ATGAA	2 cut(s)	164, 195
TspRI	CASTG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	5 cut(s)	20, 26, 296, 306, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.