Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005271

Physical Location & Seq

Genomic Coordinates Reverse (-)

30502630 .. 30504415

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31291.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCAGCTCCATAATTCACACCCATCTTACCAGCCTGAGAGTGAGAAGAGTGAGAGATTAAGAATGAAGTCCAGCCCCTCAGATTTGATCAAGCTTCTAATACTAGGACTAGTAGGATCATCATGTCTTTCAGTTCTCTGTGCTGCAGAAGATTTCGATTTCTTCTACTTTGTTCAGCAGTGGCCAGGATCATTCTGTGATACAAAGACAAGTTGCTGCTATCCAACCACAGGTAAGCCTGCAGCGGATTTTGGGATCCACGGGCTCTGGCCAAATTACAAGGATGGTTCATACCCCTCAAACTGTGATCCAAACAACCCCTTTGATCAGTCTCAGATTTCAGATTTAATTAGCAGTATGCAAGAAGAATGGCCAACACTAGCTTGCCCTAGCAGCAGTGGGATTGCTTTCTGGACACACGAGTGGGAAAAACATGGAACCTGCTCTGAGACTGCCATTAACCAACATAGTTACTTTGCAGCGGCTCTTGACCTCAAGAAGAAGGCCAACCTCCTCCAAGCTCTTCAAAGTACAGGAATCAAACCCAACGGCGAGTCTTATACCCTGGCGGACATCAAGGCGGCCCTGAAAAATGCAATTGGATACACTCCATATATCGAGTGCAATGTCGATGAGTCCGGAAACAGCCAACTTTACCAGGTCTACTTGTGCGTGGACACTAATGGCTCTGACCTCATTGAGTGCCCGATTTTCCCCCATGGGAAATGTGGTTCAAGCATTGAGTTCCCTACCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009611 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016070 GO:0016787 GO:0016788 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042440 GO:0042594 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0046148 GO:0046283 GO:0046483 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

253

Amino Acids

27.83

Weight (kDa)

4.89

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	52 - 235	2.7e-65	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02990
fragaria_vesca	FvH4_4g31291 FvH4_5g24800
malus_domestica	MD13G1071600.v1.1 MD16G1072300.v1.1 MD16G1072400.v1.1
prunus_persica	Prupe.1G275300_v2.0.a1
pyrus_communis	pycom13g06420 pycom16g06270
rosa_chinensis	RchiOBHm_Chr4g0439741 RchiOBHm_Chr7g0215091 RchiOBHm_Chr7g0215101
rosa_laevigata	RLG00000002691 RLG00000006240
rosa_multiflora	Rmu_sc0001239.1_g000001 Rmu_sc0010226.1_g000008 Rmu_ssc0000029.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380680
rosa_rugosa	Rorug04G0321200 Rorug07G0150100
rosa_samantha	Rh4AG372200 Rh4BG384300 Rh4CG399000 Rh4DG378700 Rh7AG287100 Rh7BG278700 Rh7CG306800
rosa_wichuraiana	Rw4G031780 Rw7G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	663
AccIII	TCCGGA	1 cut(s)	638
AciI	CCGC	4 cut(s)	245, 482, 569, 581
AclWI	GGATC	5 cut(s)	124, 196, 250, 263, 302
AcoI	YGGCCR	3 cut(s)	182, 269, 371
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	527, 735
AhlI	ACTAGT	1 cut(s)	109
AjnI	CCWGG	3 cut(s)	184, 564, 657
AleI	CACNNNNGTG	1 cut(s)	421
AloI	GAACNNNNNNTCC	2 cut(s)	715, 747
AluBI	AGCT	4 cut(s)	7, 94, 383, 521
AluI	AGCT	4 cut(s)	7, 94, 383, 521
Alw26I	GTCTC	2 cut(s)	336, 443
AlwI	GGATC	5 cut(s)	124, 196, 250, 263, 302
Aor13HI	TCCGGA	1 cut(s)	638
AoxI	GGCC	5 cut(s)	182, 269, 371, 504, 582
ApeKI	GCWGC	6 cut(s)	4, 143, 216, 242, 393, 479
AspS9I	GGNCC	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	707
BalI	TGGCCA	3 cut(s)	184, 271, 373
BamHI	GGATCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	419
BbvI	GCAGC	6 cut(s)	16, 130, 203, 254, 405, 491
BccI	CCATC	2 cut(s)	31, 278
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	3 cut(s)	186, 566, 659
BciVI	GTATCC	1 cut(s)	596
BclI	TGATCA	2 cut(s)	87, 325
BcoDI	GTCTC	2 cut(s)	336, 443
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	5 cut(s)	104, 110, 380, 390, 757
BfmI	CTRYAG	2 cut(s)	144, 240
BfuAI	ACCTGC	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	8 cut(s)	5, 144, 217, 243, 394, 480, 483, 582
BlsI	GCNGC	8 cut(s)	6, 145, 218, 244, 395, 481, 484, 583
Bme1390I	CCNGG	3 cut(s)	186, 566, 659
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	257, 439
BmrFI	CCNGG	3 cut(s)	186, 566, 659
BpuEI	CTTGAG	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	259, 564, 718
BsaWI	WCCGGW	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	631
BseAI	TCCGGA	1 cut(s)	638
BseBI	CCWGG	3 cut(s)	186, 566, 659
BseDI	CCNNGG	3 cut(s)	259, 564, 718
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	4 cut(s)	27, 93, 347, 438
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	6 cut(s)	16, 130, 203, 254, 405, 491
BshFI	GGCC	5 cut(s)	184, 271, 373, 506, 584
BsiSI	CCGG	1 cut(s)	639
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	336, 443
BsnI	GGCC	5 cut(s)	184, 271, 373, 506, 584
Bsp1286I	GDGCHC	2 cut(s)	267, 707
Bsp13I	TCCGGA	1 cut(s)	638
Bsp143I	GATC	6 cut(s)	87, 116, 188, 255, 307, 325
Bsp19I	CCATGG	1 cut(s)	718
BspACI	CCGC	4 cut(s)	245, 482, 569, 581
BspANI	GGCC	5 cut(s)	184, 271, 373, 506, 584
BspCNI	CTCAG	4 cut(s)	28, 92, 346, 439
BspEI	TCCGGA	1 cut(s)	638
BspLI	GGNNCC	2 cut(s)	257, 439
BspMAI	CTGCAG	2 cut(s)	148, 244
BspMI	ACCTGC	1 cut(s)	449
BspPI	GGATC	5 cut(s)	124, 196, 250, 263, 302
BspQI	GCTCTTC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	631
BssECI	CCNNGG	3 cut(s)	259, 564, 718
BssMI	GATC	6 cut(s)	87, 116, 188, 255, 307, 325
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	718
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	3 cut(s)	186, 566, 659
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	2 cut(s)	41, 528
BstC8I	GCNNGC	2 cut(s)	240, 385
BstDEI	CTNAG	4 cut(s)	36, 79, 333, 447
BstDSI	CCRYGG	2 cut(s)	259, 718
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	6 cut(s)	90, 119, 191, 258, 310, 328
BstMAI	GTCTC	2 cut(s)	336, 443
BstMBI	GATC	6 cut(s)	87, 116, 188, 255, 307, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNI	CCWGG	3 cut(s)	186, 566, 659
BstSCI	CCNGG	3 cut(s)	184, 564, 657
BstSFI	CTRYAG	2 cut(s)	144, 240
BstSLI	GKGCMC	1 cut(s)	707
BstV1I	GCAGC	6 cut(s)	16, 130, 203, 254, 405, 491
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	5 cut(s)	184, 271, 373, 506, 584
BtgI	CCRYGG	2 cut(s)	259, 718
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	2 cut(s)	185, 403
BtsIMutI	CAGTG	2 cut(s)	185, 403
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	240, 385
Cfr13I	GGNCC	1 cut(s)	583
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	3 cut(s)	123, 434, 719
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	4 cut(s)	36, 79, 333, 447
DpnI	GATC	6 cut(s)	89, 118, 190, 257, 309, 327
DpnII	GATC	6 cut(s)	87, 116, 188, 255, 307, 325
EaeI	YGGCCR	3 cut(s)	182, 269, 371
Eam1104I	CTCTTC	2 cut(s)	41, 528
EarI	CTCTTC	2 cut(s)	41, 528
EciI	GGCGGA	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	267
EcoRII	CCWGG	3 cut(s)	184, 564, 657
EcoT14I	CCWWGG	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	718
FaeI	CATG	3 cut(s)	126, 437, 722
FatI	CATG	3 cut(s)	122, 433, 718
FbaI	TGATCA	2 cut(s)	87, 325
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	8 cut(s)	5, 144, 217, 243, 394, 480, 483, 582
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	8 cut(s)	5, 144, 217, 243, 394, 480, 483, 582
FspBI	CTAG	5 cut(s)	104, 110, 380, 390, 757
GluI	GCNGC	8 cut(s)	5, 144, 217, 243, 394, 480, 483, 582
HaeIII	GGCC	5 cut(s)	184, 271, 373, 506, 584
HapII	CCGG	1 cut(s)	639
Hin1II	CATG	3 cut(s)	126, 437, 722
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	3 cut(s)	537, 554, 635
HpaII	CCGG	1 cut(s)	639
Hpy166II	GTNNAC	2 cut(s)	664, 676
Hpy188I	TCNGA	5 cut(s)	82, 336, 343, 448, 691
Hpy188III	TCNNGA	4 cut(s)	412, 488, 496, 639
Hpy8I	GTNNAC	2 cut(s)	664, 676
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	7 cut(s)	4, 146, 242, 361, 479, 596, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	4 cut(s)	36, 79, 333, 447
Hsp92II	CATG	3 cut(s)	126, 437, 722
Kpn2I	TCCGGA	1 cut(s)	638
Ksp22I	TGATCA	2 cut(s)	87, 325
Kzo9I	GATC	6 cut(s)	87, 116, 188, 255, 307, 325
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	6 cut(s)	16, 130, 203, 254, 405, 491
MabI	ACCWGGT	1 cut(s)	657
MaeI	CTAG	5 cut(s)	104, 110, 380, 390, 757
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	6 cut(s)	89, 118, 190, 257, 309, 327
MboI	GATC	6 cut(s)	87, 116, 188, 255, 307, 325
MboII	GAAGA	6 cut(s)	58, 154, 161, 377, 511, 515
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	2 cut(s)	267, 707
MlsI	TGGCCA	3 cut(s)	184, 271, 373
MluCI	AATT	4 cut(s)	13, 274, 348, 597
MluNI	TGGCCA	3 cut(s)	184, 271, 373
MlyI	GAGTC	2 cut(s)	563, 644
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	88, 307, 503, 521, 524, 704
Mox20I	TGGCCA	3 cut(s)	184, 271, 373
MroI	TCCGGA	1 cut(s)	638
MscI	TGGCCA	3 cut(s)	184, 271, 373
MseI	TTAA	3 cut(s)	59, 347, 459
MslI	CAYNNNNRTG	1 cut(s)	421
Msp20I	TGGCCA	3 cut(s)	184, 271, 373
MspA1I	CMGCKG	2 cut(s)	245, 482
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	3 cut(s)	186, 566, 659
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	3 cut(s)	186, 566, 659
MwoI	GCNNNNNNNGC	1 cut(s)	393
NcoI	CCATGG	1 cut(s)	718
NdeII	GATC	6 cut(s)	87, 116, 188, 255, 307, 325
NlaIII	CATG	3 cut(s)	126, 437, 722
NlaIV	GGNNCC	2 cut(s)	257, 439
OliI	CACNNNNGTG	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	537
PkrI	GCNGC	8 cut(s)	6, 145, 218, 244, 395, 481, 484, 583
PleI	GAGTC	2 cut(s)	562, 643
PpsI	GAGTC	2 cut(s)	562, 643
Psp6I	CCWGG	3 cut(s)	184, 564, 657
PspGI	CCWGG	3 cut(s)	184, 564, 657
PspN4I	GGNNCC	2 cut(s)	257, 439
PspPI	GGNCC	1 cut(s)	583
PstI	CTGCAG	2 cut(s)	148, 244
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
RseI	CAYNNNNRTG	1 cut(s)	421
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	59, 347, 459
SatI	GCNGC	8 cut(s)	5, 144, 217, 243, 394, 480, 483, 582
Sau3AI	GATC	6 cut(s)	87, 116, 188, 255, 307, 325
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	2 cut(s)	563, 644
ScrFI	CCNGG	3 cut(s)	186, 566, 659
SduI	GDGCHC	2 cut(s)	267, 707
SexAI	ACCWGGT	1 cut(s)	657
SfcI	CTRYAG	2 cut(s)	144, 240
SmiMI	CAYNNNNRTG	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SpeI	ACTAGT	1 cut(s)	109
Sse9I	AATT	4 cut(s)	13, 274, 348, 597
SsiI	CCGC	4 cut(s)	245, 482, 569, 581
SspMI	CTAG	5 cut(s)	104, 110, 380, 390, 757
StyD4I	CCNGG	3 cut(s)	184, 564, 657
StyI	CCWWGG	1 cut(s)	718
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	3 cut(s)	156, 618, 630
TasI	AATT	4 cut(s)	13, 274, 348, 597
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	2 cut(s)	485, 584
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	3 cut(s)	59, 347, 459
Tru9I	TTAA	3 cut(s)	59, 347, 459
TscAI	CASTG	2 cut(s)	185, 403
TseI	GCWGC	6 cut(s)	4, 143, 216, 242, 393, 479
TspDTI	ATGAA	2 cut(s)	80, 279
TspRI	CASTG	2 cut(s)	185, 403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	5 cut(s)	104, 110, 380, 390, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.