Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005271

Physical Location & Seq

Genomic Coordinates Reverse (-)

30842950 .. 30844216

Gene Structure 1267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG287100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTCATTGAGAACGATGAACAGTGGCAATCGGGATTTGCCCAGATTTCCAACTCTTTCGTCCTCAACCAAAATTCGTGTTTAAGCACAGATGTCCAAGTTCCAACTGGCTCTTCAACCCAAATATCTCTTGCAGATATCAAAAATCCTGTTTCCTTCTACATTGCTTATCAGTGGCCAGGCTCATACTGTGCAGCAACAAAGCAGGGTTGTTGCTACCCAAAGAGTATCAGAAAACATCCCAGTTTCACAATTGGTGGCATATGGCCTTATACTTTTTCTGGGGATAGACCAACCTACTGCAAATCTAAGACCCCTTTTAGTATATCCAAGATCTCAAACCTGACCAAGAGTTTGGAAAGGAATTGGCCATCACTATCCTGCCCAAGCCGTACTAGTAGCATTAGCAGTCTCAATCTCAGGAAGAAAATAGACATGCTCCAGATACTCAGCAATGCAGGAATCCATCCAAATGGGTCATTTTATGAGATGACTGCAGTTTTCAATGCCATACAAAAGGCCACCATCTATCTTCCGGGGTTTATCTGTAACAAAGACAAATCAGGCAACAAACAGCTCTACCAGATTATACTCTGTGGAAACACCGCCGGAACCAGAATCATAGACTGCCTCGGCAACCCAAGATCGAATACTGGACAATGCCCCGAAAACTTTAACTTCCCTCCCTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

231

Amino Acids

25.57

Weight (kDa)

9.16

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	53 - 131	3.1e-16	Ribonuclease T2 family
Ribonuclease_T2	PF00445	137 - 210	2.8e-12	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02990
fragaria_vesca	FvH4_4g31291 FvH4_5g24800
malus_domestica	MD13G1071600.v1.1 MD16G1072300.v1.1 MD16G1072400.v1.1
prunus_persica	Prupe.1G275300_v2.0.a1
pyrus_communis	pycom13g06420 pycom16g06270
rosa_chinensis	RchiOBHm_Chr4g0439741 RchiOBHm_Chr7g0215091 RchiOBHm_Chr7g0215101
rosa_laevigata	RLG00000002691 RLG00000006240
rosa_multiflora	Rmu_sc0001239.1_g000001 Rmu_sc0010226.1_g000008 Rmu_ssc0000029.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380680
rosa_rugosa	Rorug04G0321200 Rorug07G0150100
rosa_samantha	Rh4AG372200 Rh4BG384300 Rh4CG399000 Rh4DG378700 Rh7AG287100 Rh7BG278700 Rh7CG306800
rosa_wichuraiana	Rw4G031780 Rw7G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	606
AcoI	YGGCCR	2 cut(s)	176, 368
AcsI	RAATTY	1 cut(s)	73
AfaI	GTAC	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	117, 505, 691
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	1 cut(s)	577
AluI	AGCT	1 cut(s)	577
Alw26I	GTCTC	1 cut(s)	416
AoxI	GGCC	4 cut(s)	176, 266, 368, 519
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AsuC2I	CCSGG	1 cut(s)	537
BalI	TGGCCA	2 cut(s)	178, 370
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	3 cut(s)	379, 474, 533
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	416
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	495
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	180, 537
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	2 cut(s)	180, 537
BmrI	ACTGGG	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	536, 631
Bse1I	ACTGG	3 cut(s)	112, 243, 658
Bse3DI	GCAATG	2 cut(s)	162, 460
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	536, 631
BseGI	GGATG	2 cut(s)	238, 466
BseMI	GCAATG	2 cut(s)	162, 460
BseMII	CTCAG	2 cut(s)	433, 463
BseNI	ACTGG	3 cut(s)	112, 243, 658
BseXI	GCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	178, 268, 370, 521
BsiSI	CCGG	2 cut(s)	536, 609
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	178, 268, 370, 521
Bsp143I	GATC	2 cut(s)	333, 644
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	4 cut(s)	178, 268, 370, 521
BspCNI	CTCAG	2 cut(s)	432, 462
BspLI	GGNNCC	1 cut(s)	613
BspMAI	CTGCAG	1 cut(s)	499
BspQI	GCTCTTC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	162, 460
BsrI	ACTGG	3 cut(s)	112, 243, 658
BssECI	CCNNGG	2 cut(s)	536, 631
BssMI	GATC	2 cut(s)	333, 644
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	24, 191
Bst6I	CTCTTC	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	309, 419, 449
BstF5I	GGATG	2 cut(s)	238, 466
BstKTI	GATC	2 cut(s)	336, 647
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	333, 644
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	178, 535
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	333
BstXI	CCANNNNNNTGG	2 cut(s)	355, 473
BstYI	RGATCY	1 cut(s)	333
BsuRI	GGCC	4 cut(s)	178, 268, 370, 521
BtsCI	GGATG	2 cut(s)	238, 466
BtsIMutI	CAGTG	2 cut(s)	29, 179
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	1 cut(s)	436
CviJI	RGCY	8 cut(s)	111, 178, 183, 268, 370, 390, 521, 577
CviKI_1	RGCY	8 cut(s)	111, 178, 183, 268, 370, 390, 521, 577
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	3 cut(s)	309, 419, 449
DpnI	GATC	2 cut(s)	335, 646
DpnII	GATC	2 cut(s)	333, 644
EaeI	YGGCCR	2 cut(s)	176, 368
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	139
FaeI	CATG	1 cut(s)	439
FatI	CATG	1 cut(s)	435
FauNDI	CATATG	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	225, 453
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	4 cut(s)	178, 268, 370, 521
HapII	CCGG	2 cut(s)	536, 609
Hin1II	CATG	1 cut(s)	439
HinfI	GANTC	2 cut(s)	462, 618
HpaII	CCGG	2 cut(s)	536, 609
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	3 cut(s)	33, 421, 442
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	24, 191
HpyCH4V	TGCA	5 cut(s)	134, 194, 303, 458, 497
HpyF3I	CTNAG	3 cut(s)	309, 419, 449
Hsp92II	CATG	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	333, 644
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	444
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	2 cut(s)	335, 646
MboI	GATC	2 cut(s)	333, 644
MboII	GAAGA	3 cut(s)	105, 436, 524
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	333
MlsI	TGGCCA	2 cut(s)	178, 370
MluCI	AATT	3 cut(s)	73, 252, 364
MluNI	TGGCCA	2 cut(s)	178, 370
MmeI	TCCRAC	2 cut(s)	75, 128
MnlI	CCTC	3 cut(s)	74, 641, 693
Mox20I	TGGCCA	2 cut(s)	178, 370
MscI	TGGCCA	2 cut(s)	178, 370
MseI	TTAA	2 cut(s)	83, 675
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	2 cut(s)	178, 370
MspI	CCGG	2 cut(s)	536, 609
MspR9I	CCNGG	2 cut(s)	180, 537
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	180
NciI	CCSGG	1 cut(s)	537
NdeI	CATATG	1 cut(s)	263
NdeII	GATC	2 cut(s)	333, 644
NlaIII	CATG	1 cut(s)	439
NlaIV	GGNNCC	1 cut(s)	613
NmeAIII	GCCGAG	1 cut(s)	612
NspI	RCATGY	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	462, 618
PkrI	GCNGC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	613
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	333
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	471
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	83, 675
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	333, 644
ScrFI	CCNGG	2 cut(s)	180, 537
SetI	ASST	3 cut(s)	299, 345, 579
SfcI	CTRYAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	471
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	3 cut(s)	73, 252, 364
SsiI	CCGC	1 cut(s)	606
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	178, 535
TaaI	ACNGT	2 cut(s)	24, 191
TaqI	TCGA	1 cut(s)	647
TasI	AATT	3 cut(s)	73, 252, 364
TfiI	GAWTC	2 cut(s)	462, 618
Tru1I	TTAA	2 cut(s)	83, 675
Tru9I	TTAA	2 cut(s)	83, 675
TscAI	CASTG	2 cut(s)	29, 179
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	29, 179
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.