Rh7CG306800

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005271
Physical Location & Seq
Reverse (-)
32145173 .. 32146114
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG306800.1

Sequence Viewer

Length: 435 bp
ATGTCCAAGTTCCAACTGGCTCTTCAACCCAAATATCTCTTGCAGATATCAAAAATCCTGTTTCCTTCTACATTGCTTATCAGTGGCCAGGCTCATACTGTGCAGCAACAAAGCAGGGTTGTTGCTACCCAAAGAGTTGGTGGCATATGGCCTTATACTTTTTCTGGGGATAGACCAACCTACTGCAAATCTAAGACCCCTTTTAGTATATCCAAGATCTCAAACCTGACCAAGAGTTTGGAAAGGAATTGGCCATCACAATCCTGCCCAAGCCGTACTAGTAGCATTAGCAGTAAGAAACTATGGGACTTGTGCAGAATCACTCTTTGGAGGTCAATACCAATACTTTCATGCAGGTCTCAATCTCAGGAAGAAAATAGACATGCTCCAGATACTCAGCAATGCAGGAATCCATCCAAATGGGTCATTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

144

Amino Acids

16.47

Weight (kDa)

10.22

Isoelectric Point (pI)

69.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 45 - 102 4.1e-06 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AcoI YGGCCR 2 cut(s) 85, 251
AfaI GTAC 1 cut(s) 277
AgsI TTSAA 1 cut(s) 26
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 3 cut(s) 38, 310, 342
Alw26I GTCTC 1 cut(s) 363
AoxI GGCC 3 cut(s) 85, 149, 251
ApeKI GCWGC 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 220, 252
BalI TGGCCA 2 cut(s) 87, 253
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 262, 421
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 363
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 345
BglII AGATCT 1 cut(s) 216
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 2 cut(s) 71, 407
BseBI CCWGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 413
BseMI GCAATG 2 cut(s) 71, 407
BseMII CTCAG 2 cut(s) 380, 410
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 2 cut(s) 122, 334
BshFI GGCC 3 cut(s) 87, 151, 253
BslFI GGGAC 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 3 cut(s) 87, 151, 253
Bso31I GGTCTC 1 cut(s) 363
Bsp143I GATC 1 cut(s) 216
BspANI GGCC 3 cut(s) 87, 151, 253
BspCNI CTCAG 2 cut(s) 379, 409
BspMI ACCTGC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 27
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 2 cut(s) 71, 407
BsrI ACTGG 1 cut(s) 21
BssMI GATC 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 27
BstDEI CTNAG 3 cut(s) 192, 366, 396
BstF5I GGATG 1 cut(s) 413
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 216
BstXI CCANNNNNNTGG 3 cut(s) 137, 238, 420
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 3 cut(s) 87, 151, 253
BtsCI GGATG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 276
CviAII CATG 2 cut(s) 351, 383
CviJI RGCY 6 cut(s) 20, 87, 92, 151, 253, 273
CviKI_1 RGCY 6 cut(s) 20, 87, 92, 151, 253, 273
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 3 cut(s) 192, 366, 396
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 85, 251
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco31I GGTCTC 1 cut(s) 363
Eco32I GATATC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 48
FaeI CATG 2 cut(s) 354, 386
FaiI YATR 9 cut(s) 96, 146, 148, 156, 209, 304, 352, 384, 433
FaqI GGGAC 1 cut(s) 320
FatI CATG 2 cut(s) 350, 382
FauNDI CATATG 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 3 cut(s) 87, 151, 253
Hin1II CATG 2 cut(s) 354, 386
HinfI GANTC 2 cut(s) 318, 409
Hpy188III TCNNGA 2 cut(s) 368, 389
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 6 cut(s) 43, 103, 186, 315, 354, 405
HpyF3I CTNAG 3 cut(s) 192, 366, 396
Hsp92II CATG 2 cut(s) 354, 386
Kzo9I GATC 1 cut(s) 216
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 1 cut(s) 279
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 2 cut(s) 14, 383
MflI RGATCY 1 cut(s) 216
MlsI TGGCCA 2 cut(s) 87, 253
MluCI AATT 1 cut(s) 247
MluNI TGGCCA 2 cut(s) 87, 253
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 1 cut(s) 324
Mox20I TGGCCA 2 cut(s) 87, 253
MscI TGGCCA 2 cut(s) 87, 253
MslI CAYNNNNRTG 1 cut(s) 418
Msp20I TGGCCA 2 cut(s) 87, 253
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 146
NdeII GATC 1 cut(s) 216
NlaIII CATG 2 cut(s) 354, 386
NspI RCATGY 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 318, 409
PkrI GCNGC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 418
SapI GCTCTTC 1 cut(s) 27
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 89
SetI ASST 4 cut(s) 182, 228, 335, 359
SmiMI CAYNNNNRTG 1 cut(s) 418
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 1 cut(s) 247
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 100
TasI AATT 1 cut(s) 247
TfiI GAWTC 2 cut(s) 318, 409
TscAI CASTG 1 cut(s) 88
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 339
TspRI CASTG 1 cut(s) 88
XceI RCATGY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 2 cut(s) 13, 137
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.